Wall clock time and date at job start Tue Mar 31 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00295 * 2 1 4 4 N 1.34782 * 120.00057 * 180.02562 * 2 1 3 5 5 C 1.47211 * 126.70028 * 359.68657 * 4 2 1 6 6 C 1.53759 * 106.40400 * 148.94141 * 5 4 2 7 7 H 1.08997 * 112.86820 * 141.43034 * 6 5 4 8 8 C 1.54306 * 109.07942 * 266.66822 * 6 5 4 9 9 N 1.48524 * 104.68958 * 136.30107 * 8 6 5 10 10 C 1.46907 * 110.99954 * 200.77238 * 9 8 6 11 11 C 1.50701 * 109.46913 * 290.12622 * 10 9 8 12 12 O 1.21298 * 120.00222 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00375 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00601 * 179.97438 * 13 11 10 15 15 H 1.07996 * 119.99517 * 359.97438 * 14 13 11 16 16 C 1.38953 * 120.00068 * 180.02562 * 14 13 11 17 17 N 1.31402 * 119.99632 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99886 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46873 * 90.00104 * 18 16 14 20 20 H 1.48498 * 109.46989 * 209.99844 * 18 16 14 21 21 H 1.48496 * 109.47245 * 330.00032 * 18 16 14 22 22 C 1.50364 * 104.82452 * 320.80596 * 9 8 6 23 23 C 1.54301 * 103.80704 * 38.61431 * 22 9 8 24 24 C 1.53004 * 112.04773 * 99.65890 * 23 22 9 25 25 C 1.47206 * 126.70566 * 179.97438 * 4 2 1 26 26 H 1.08996 * 109.47253 * 269.99534 * 1 2 3 27 27 H 1.08994 * 109.46952 * 29.99616 * 1 2 3 28 28 H 1.09001 * 109.47024 * 149.99538 * 1 2 3 29 29 H 1.09001 * 110.06551 * 268.17493 * 5 4 2 30 30 H 1.08999 * 110.06670 * 29.70129 * 5 4 2 31 31 H 1.09001 * 110.38907 * 255.09992 * 8 6 5 32 32 H 1.08996 * 110.39277 * 17.49796 * 8 6 5 33 33 H 1.09002 * 109.46936 * 50.12360 * 10 9 8 34 34 H 1.09001 * 109.47230 * 170.12777 * 10 9 8 35 35 H 0.97006 * 119.99808 * 0.02562 * 13 11 10 36 36 H 0.97002 * 119.99829 * 180.02562 * 17 16 14 37 37 H 1.09002 * 110.29525 * 280.35775 * 22 9 8 38 38 H 1.08995 * 111.34065 * 157.38544 * 22 9 8 39 39 H 1.08999 * 109.47597 * 181.97424 * 24 23 22 40 40 H 1.08998 * 109.47404 * 301.98295 * 24 23 22 41 41 H 1.08998 * 109.46555 * 61.97367 * 24 23 22 42 42 H 1.08999 * 110.06592 * 330.29525 * 25 4 2 43 43 H 1.08999 * 110.06909 * 91.76794 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5986 -2.5193 0.0053 6 6 2.5838 -3.4196 -0.7583 7 1 2.6826 -4.4106 -0.3153 8 6 2.1603 -3.4873 -2.2405 9 7 3.4276 -3.3421 -3.0013 10 6 3.1676 -2.8987 -4.3776 11 6 2.5087 -4.0135 -5.1483 12 8 2.2787 -5.0733 -4.6049 13 7 2.1748 -3.8331 -6.4415 14 6 1.5758 -4.8474 -7.1430 15 1 1.3719 -5.7912 -6.6593 16 6 1.2322 -4.6615 -8.4764 17 7 0.6585 -5.6339 -9.1487 18 14 1.5857 -3.0292 -9.3131 19 1 2.9381 -3.0694 -9.9252 20 1 0.5713 -2.7847 -10.3697 21 1 1.5288 -1.9360 -8.3097 22 6 4.2170 -2.3126 -2.2410 23 6 3.9266 -2.6443 -0.7623 24 6 5.0591 -3.4487 -0.1210 25 6 3.6429 -1.3391 -0.0011 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5139 29 1 1.4855 -2.8733 1.0300 30 1 0.6315 -2.5122 -0.4974 31 1 1.6942 -4.4481 -2.4588 32 1 1.4787 -2.6707 -2.4785 33 1 2.5095 -2.0299 -4.3612 34 1 4.1093 -2.6324 -4.8575 35 1 2.3591 -2.9857 -6.8763 36 1 0.4190 -5.5042 -10.0797 37 1 3.8625 -1.3105 -2.4821 38 1 5.2837 -2.3989 -2.4472 39 1 4.7960 -3.6894 0.9090 40 1 5.2127 -4.3707 -0.6817 41 1 5.9758 -2.8590 -0.1335 42 1 4.1179 -0.4995 -0.5085 43 1 4.0111 -1.4144 1.0220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101100323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:09 Heat of formation + Delta-G solvation = -79.060279 kcal Electronic energy + Delta-G solvation = -24619.860166 eV Core-core repulsion = 21085.112594 eV Total energy + Delta-G solvation = -3534.747572 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90536 -40.37785 -39.58008 -36.80426 -35.89603 -34.05993 -33.73644 -32.12643 -30.91013 -29.24985 -27.20579 -26.95968 -26.41597 -24.05338 -22.29459 -21.30001 -20.63562 -20.15501 -19.96870 -18.03383 -17.74050 -17.18600 -16.81433 -16.56038 -16.24543 -16.13321 -15.83200 -15.22299 -15.06316 -14.96329 -14.52533 -14.23110 -14.05382 -13.90244 -13.77318 -13.49474 -13.31900 -13.21305 -13.02702 -12.92089 -12.78814 -12.45541 -12.42602 -12.23867 -11.99954 -11.73646 -11.65034 -11.56231 -11.46298 -11.00861 -10.41336 -10.24878 -9.80782 -9.36471 -8.42103 -6.02379 1.28585 1.33448 1.41951 1.53732 1.93854 1.98525 2.21128 2.58669 3.11532 3.16782 3.27326 3.46559 3.63467 3.84466 4.05253 4.08792 4.13286 4.22482 4.27318 4.34638 4.37057 4.45332 4.50200 4.61921 4.62900 4.67227 4.72520 4.79871 4.92179 4.94958 4.99939 5.13150 5.14300 5.21500 5.29365 5.48723 5.51359 5.84439 5.85567 5.98097 6.47776 6.58751 6.87513 7.06311 7.38711 7.95170 8.75463 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.003817 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.660684 B = 7333.574462 C = 7914.498568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.521 3.479 3 O -0.600 6.600 4 N -0.618 5.618 5 C 0.106 3.894 6 C -0.090 4.090 7 H 0.116 0.884 8 C 0.046 3.954 9 N -0.506 5.506 10 C 0.044 3.956 11 C 0.455 3.545 12 O -0.602 6.602 13 N -0.594 5.594 14 C -0.326 4.326 15 H 0.058 0.942 16 C -0.012 4.012 17 N -0.933 5.933 18 Si 0.961 3.039 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.236 1.236 22 C 0.044 3.956 23 C -0.065 4.065 24 C -0.121 4.121 25 C 0.113 3.887 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.387 0.613 36 H 0.279 0.721 37 H 0.041 0.959 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.484 11.979 20.033 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.313 3.687 3 O -0.482 6.482 4 N -0.351 5.351 5 C -0.016 4.016 6 C -0.110 4.110 7 H 0.134 0.866 8 C -0.082 4.082 9 N -0.230 5.230 10 C -0.088 4.088 11 C 0.242 3.758 12 O -0.485 6.485 13 N -0.236 5.236 14 C -0.455 4.455 15 H 0.076 0.924 16 C -0.211 4.211 17 N -0.574 5.574 18 Si 0.781 3.219 19 H -0.182 1.182 20 H -0.199 1.199 21 H -0.160 1.160 22 C -0.083 4.083 23 C -0.067 4.067 24 C -0.179 4.179 25 C -0.010 4.010 26 H 0.134 0.866 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.223 0.777 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.773 11.312 20.154 23.599 hybrid contribution -0.542 1.092 -1.309 1.788 sum 4.231 12.404 18.846 22.954 Atomic orbital electron populations 1.21933 0.88424 1.05741 1.06369 1.21179 0.91821 0.81317 0.74419 1.90696 1.72042 1.32335 1.53140 1.48693 1.07888 1.06344 1.72134 1.22337 0.97216 0.79971 1.02094 1.22805 0.94021 1.00137 0.94031 0.86622 1.23166 0.91151 1.00748 0.93160 1.65368 1.16235 1.41604 0.99795 1.21967 1.01679 0.94001 0.91173 1.20720 0.82740 0.90130 0.82186 1.90523 1.58468 1.30006 1.69512 1.42057 1.56094 1.14685 1.10735 1.18998 1.37031 0.95030 0.94435 0.92388 1.26034 0.96080 1.02640 0.96316 1.69790 1.41801 1.34850 1.10936 0.85419 0.79372 0.77877 0.79204 1.18165 1.19894 1.15982 1.23662 0.99641 0.92651 0.92326 1.21994 0.96266 0.94356 0.94052 1.21635 0.96200 0.99406 1.00639 1.22130 0.81027 0.96768 1.01071 0.86567 0.88939 0.88532 0.88060 0.89082 0.91625 0.94655 0.91413 0.86642 0.77746 0.91141 0.94056 0.88497 0.90654 0.92359 0.91158 0.91570 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.93 71.24 0.71 -1.54 16 2 C 0.52 11.50 7.99 87.66 0.70 12.20 16 3 O -0.60 -18.78 17.33 -3.04 -0.05 -18.83 16 4 N -0.62 -11.53 3.32 -815.31 -2.71 -14.24 16 5 C 0.11 1.53 6.14 86.50 0.53 2.06 16 6 C -0.09 -1.70 3.72 -9.39 -0.03 -1.73 16 7 H 0.12 2.00 7.90 -2.39 -0.02 1.98 16 8 C 0.05 1.28 5.26 86.43 0.46 1.74 16 9 N -0.51 -15.14 5.05 -881.33 -4.45 -19.59 16 10 C 0.04 1.41 5.34 85.56 0.46 1.86 16 11 C 0.45 20.67 7.58 87.66 0.66 21.33 16 12 O -0.60 -32.80 14.41 -3.09 -0.04 -32.85 16 13 N -0.59 -28.30 5.09 -306.98 -1.56 -29.86 16 14 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 15 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 16 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 17 N -0.93 -56.14 13.96 21.66 0.30 -55.83 16 18 Si 0.96 39.17 27.74 68.60 1.90 41.07 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.24 -8.26 6.52 99.48 0.65 -7.61 16 22 C 0.04 0.98 5.73 86.06 0.49 1.47 16 23 C -0.07 -1.15 1.06 -50.79 -0.05 -1.21 16 24 C -0.12 -1.71 8.52 71.98 0.61 -1.10 16 25 C 0.11 2.02 5.94 86.49 0.51 2.53 16 26 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.10 1.04 6.48 -2.39 -0.02 1.02 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.21 6.01 -2.39 -0.01 1.19 16 31 H 0.07 2.33 6.90 -2.39 -0.02 2.32 16 32 H 0.04 0.98 7.21 -2.39 -0.02 0.96 16 33 H 0.07 1.95 7.88 -2.39 -0.02 1.93 16 34 H 0.12 3.16 8.13 -2.39 -0.02 3.14 16 35 H 0.39 15.53 5.76 -92.70 -0.53 14.99 16 36 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.04 0.95 7.39 -2.39 -0.02 0.93 16 38 H 0.10 1.93 7.89 -2.39 -0.02 1.91 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 1.40 7.34 -2.39 -0.02 1.38 16 43 H 0.09 1.27 7.88 -2.39 -0.02 1.25 16 Total: -1.00 -80.84 341.83 0.18 -80.66 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.43 Total: 30.27 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.37 Total: 19.20 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -8.42 Total: -119.52 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -0.10 Total: -51.68 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.90 Total: 41.07 kcal Total: -80.84 0.18 -80.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101100323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.603 kcal (2) G-P(sol) polarization free energy of solvation -80.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds