Wall clock time and date at job start Tue Mar 31 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 120.00244 * 2 1 4 4 O 1.21282 * 119.99970 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00065 * 179.97438 * 3 2 1 6 6 C 1.50706 * 109.47086 * 179.97438 * 5 3 2 7 7 O 1.21277 * 119.99864 * 0.02562 * 6 5 3 8 8 N 1.34777 * 120.00107 * 179.97438 * 6 5 3 9 9 C 1.46494 * 120.00191 * 179.97438 * 8 6 5 10 10 C 1.54321 * 112.36134 * 299.34679 * 9 8 6 11 11 C 1.55062 * 103.93547 * 262.38610 * 10 9 8 12 12 C 1.55057 * 102.10704 * 319.94498 * 11 10 9 13 13 C 1.54325 * 103.93854 * 40.05601 * 12 11 10 14 14 H 1.08993 * 111.69103 * 97.20422 * 13 12 11 15 15 C 1.53776 * 109.06055 * 221.16515 * 13 12 11 16 16 N 1.47218 * 106.37951 * 94.89174 * 15 13 12 17 17 C 1.36941 * 126.70120 * 211.27903 * 16 15 13 18 18 H 1.07995 * 119.99663 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99609 * 359.97438 * 17 16 15 20 20 N 1.31615 * 120.00630 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99406 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46978 * 90.00062 * 21 19 17 23 23 H 1.48504 * 109.46846 * 210.00143 * 21 19 17 24 24 H 1.48500 * 109.46801 * 329.99905 * 21 19 17 25 25 C 1.47214 * 106.59604 * 31.27894 * 16 15 13 26 26 H 1.09002 * 109.46727 * 300.00148 * 1 2 3 27 27 H 1.09000 * 109.46963 * 59.99647 * 1 2 3 28 28 H 1.08999 * 109.47251 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00254 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47274 * 60.00372 * 5 3 2 31 31 H 1.08994 * 109.47219 * 299.99924 * 5 3 2 32 32 H 0.96998 * 119.99604 * 0.02562 * 8 6 5 33 33 H 1.09002 * 110.53536 * 143.77856 * 10 9 8 34 34 H 1.08994 * 110.53769 * 21.00205 * 10 9 8 35 35 H 1.08996 * 110.90165 * 201.73821 * 11 10 9 36 36 H 1.09004 * 110.89792 * 78.14209 * 11 10 9 37 37 H 1.09003 * 110.52966 * 158.66676 * 12 11 10 38 38 H 1.08996 * 110.53083 * 281.43837 * 12 11 10 39 39 H 1.08999 * 110.07460 * 214.11918 * 15 13 12 40 40 H 1.09003 * 110.07606 * 335.60442 * 15 13 12 41 41 H 0.96994 * 120.00102 * 179.97438 * 20 19 17 42 42 H 1.08996 * 110.07042 * 87.94631 * 25 16 15 43 43 H 1.08990 * 110.07290 * 209.49029 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1483 2.5880 -0.0002 7 8 3.3602 3.5098 -0.0006 8 7 5.4734 2.8342 0.0007 9 6 5.9618 4.2154 -0.0006 10 6 5.4992 5.0005 -1.2460 11 6 6.7103 4.9177 -2.2108 12 6 7.9091 5.0977 -1.2441 13 6 7.5093 4.2777 0.0007 14 1 7.9541 3.2828 -0.0124 15 6 7.9023 5.0601 1.2649 16 7 6.7035 5.8065 1.6807 17 6 6.6739 7.0199 2.3148 18 1 5.7273 7.4722 2.5711 19 6 7.8606 7.6683 2.6281 20 7 9.0142 7.1168 2.3162 21 14 7.8202 9.3239 3.4925 22 1 7.8356 9.1151 4.9627 23 1 9.0085 10.1200 3.0931 24 1 6.5844 10.0525 3.1088 25 6 5.5427 4.9938 1.2816 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9500 -0.8400 0.0004 30 1 4.0096 0.6532 -0.8891 31 1 4.0089 0.6535 0.8908 32 1 6.1037 2.0969 0.0014 33 1 5.2870 6.0378 -0.9871 34 1 4.6228 4.5296 -1.6912 35 1 6.6783 5.7226 -2.9450 36 1 6.7498 3.9457 -2.7026 37 1 8.8213 4.6988 -1.6879 38 1 8.0367 6.1487 -0.9849 39 1 8.2055 4.3703 2.0525 40 1 8.7149 5.7509 1.0398 41 1 9.8434 7.5701 2.5348 42 1 5.2901 4.2884 2.0732 43 1 4.6903 5.6385 1.0682 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111721663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:21 Heat of formation + Delta-G solvation = -40.466058 kcal Electronic energy + Delta-G solvation = -24882.955227 eV Core-core repulsion = 21349.881226 eV Total energy + Delta-G solvation = -3533.074001 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.37323 -39.38095 -37.68294 -34.65915 -34.33010 -33.26707 -31.45494 -30.89320 -29.25461 -27.64170 -26.38567 -24.55670 -24.30041 -21.58989 -20.60700 -20.47424 -19.25827 -18.79162 -17.35249 -17.19390 -16.53232 -15.98357 -15.51703 -15.38944 -14.65384 -14.59189 -14.12421 -13.74703 -13.47676 -13.41990 -13.26755 -13.08311 -12.97711 -12.52649 -12.47742 -11.96689 -11.77094 -11.19124 -10.97388 -10.87516 -10.60466 -10.47549 -10.24522 -10.12862 -10.07729 -9.97581 -9.88048 -9.83354 -9.60567 -9.27067 -9.08552 -8.68032 -8.49200 -6.80589 -5.60368 -3.04157 2.59360 2.85696 2.99979 3.43647 3.48679 3.50868 3.61679 4.48454 4.53572 4.82848 4.98279 5.00882 5.07016 5.21990 5.24893 5.30472 5.42429 5.54269 5.58816 5.71368 5.91347 5.93124 6.07586 6.17851 6.18771 6.21388 6.32944 6.41567 6.49259 6.63228 6.71439 6.87501 6.91949 7.01970 7.22923 7.28908 7.46593 7.68052 7.84071 7.91190 8.18156 8.44169 8.64846 9.26207 9.86422 10.53978 11.41121 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.003948 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.163095 B = 7090.625217 C = 7773.273319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.744 5.744 3 C 0.509 3.491 4 O -0.487 6.487 5 C -0.166 4.166 6 C 0.507 3.493 7 O -0.489 6.489 8 N -0.713 5.713 9 C 0.158 3.842 10 C -0.110 4.110 11 C -0.125 4.125 12 C -0.109 4.109 13 C -0.114 4.114 14 H 0.067 0.933 15 C 0.140 3.860 16 N -0.593 5.593 17 C -0.213 4.213 18 H 0.079 0.921 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.142 3.858 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.399 0.601 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.393 0.607 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.002 0.998 40 H 0.129 0.871 41 H 0.252 0.748 42 H 0.013 0.987 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -18.077 -8.235 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.399 5.399 3 C 0.293 3.707 4 O -0.358 6.358 5 C -0.209 4.209 6 C 0.290 3.710 7 O -0.361 6.361 8 N -0.365 5.365 9 C 0.071 3.929 10 C -0.149 4.149 11 C -0.162 4.162 12 C -0.146 4.146 13 C -0.134 4.134 14 H 0.086 0.914 15 C 0.014 3.986 16 N -0.317 5.317 17 C -0.341 4.341 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.573 5.573 21 Si 0.746 3.254 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.014 3.986 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.232 0.768 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.227 0.773 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.020 0.980 40 H 0.146 0.854 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.260 -16.360 -8.126 20.048 hybrid contribution 0.559 -0.355 0.557 0.866 sum -7.701 -16.715 -7.569 19.899 Atomic orbital electron populations 1.21482 0.79679 1.01866 1.02404 1.45812 1.07656 1.08502 1.77944 1.20110 0.89366 0.83922 0.77319 1.90890 1.69378 1.30361 1.45137 1.21610 0.94537 0.98513 1.06265 1.19826 0.82869 0.90179 0.78121 1.90865 1.54364 1.45013 1.45821 1.45976 1.06171 1.08470 1.75907 1.22091 0.93933 0.80059 0.96796 1.22597 0.97136 1.00715 0.94405 1.22604 0.95988 1.00233 0.97412 1.22445 0.96391 1.01571 0.94214 1.23023 0.92372 0.98792 0.99226 0.91424 1.22029 0.93200 0.94022 0.89348 1.44440 1.00266 1.19226 1.67752 1.19126 0.93047 0.93138 1.28808 0.90356 1.24746 0.95117 0.99143 1.01772 1.69585 0.96584 1.38390 1.52722 0.86048 0.76950 0.83246 0.79172 1.21706 1.21676 1.20659 1.21854 0.91542 0.93223 0.91955 0.92290 0.92351 0.90870 0.76825 0.86471 0.86325 0.77272 0.90438 0.91784 0.92210 0.92592 0.92629 0.90149 0.97980 0.85369 0.93735 0.96967 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 59.85 0.64 1.32 16 2 N -0.74 -6.01 5.71 -67.08 -0.38 -6.40 16 3 C 0.51 6.36 7.82 -10.99 -0.09 6.27 16 4 O -0.49 -8.99 14.18 -18.96 -0.27 -9.26 16 5 C -0.17 -1.61 6.19 -29.03 -0.18 -1.79 16 6 C 0.51 7.84 7.17 -10.98 -0.08 7.76 16 7 O -0.49 -10.15 12.26 -18.96 -0.23 -10.39 16 8 N -0.71 -10.44 5.24 -44.72 -0.23 -10.67 16 9 C 0.16 2.94 0.94 -128.68 -0.12 2.82 16 10 C -0.11 -2.03 5.57 -24.95 -0.14 -2.17 16 11 C -0.12 -1.97 6.92 -24.55 -0.17 -2.14 16 12 C -0.11 -1.90 6.22 -24.95 -0.16 -2.06 16 13 C -0.11 -2.11 3.62 -88.53 -0.32 -2.43 16 14 H 0.07 1.07 7.71 -51.93 -0.40 0.67 16 15 C 0.14 3.36 5.56 -3.25 -0.02 3.34 16 16 N -0.59 -15.60 3.39 -169.90 -0.58 -16.18 16 17 C -0.21 -6.08 10.34 -15.06 -0.16 -6.24 16 18 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 19 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 20 N -0.92 -26.67 10.08 55.49 0.56 -26.11 16 21 Si 0.92 22.44 29.55 -169.99 -5.02 17.41 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.14 3.31 5.47 -2.19 -0.01 3.30 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.40 1.68 8.83 -40.82 -0.36 1.32 16 30 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.39 4.33 8.29 -40.82 -0.34 3.99 16 33 H 0.08 1.61 7.57 -51.93 -0.39 1.22 16 34 H 0.06 1.19 6.69 -51.93 -0.35 0.85 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 39 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 40 H 0.13 3.42 4.90 -51.93 -0.25 3.17 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 42 H 0.01 0.30 8.08 -51.93 -0.42 -0.12 16 43 H 0.05 1.26 7.63 -51.93 -0.40 0.86 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -36.82 340.43 -8.57 -45.39 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.65 Total: 3.56 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.89 Total: 7.50 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.63 Total: -59.35 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.50 Total: -19.65 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.82 -8.57 -45.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111721663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.923 kcal (2) G-P(sol) polarization free energy of solvation -36.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds