Wall clock time and date at job start Tue Mar 31 2020 03:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99794 * 2 1 4 4 O 1.21278 * 120.00010 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99685 * 180.02562 * 3 2 1 6 6 C 1.50708 * 109.46893 * 180.02562 * 5 3 2 7 7 O 1.21276 * 119.99869 * 0.02562 * 6 5 3 8 8 N 1.34776 * 119.99671 * 179.97438 * 6 5 3 9 9 C 1.46499 * 119.99661 * 179.97438 * 8 6 5 10 10 C 1.53957 * 113.58030 * 205.00293 * 9 8 6 11 11 C 1.52917 * 86.77928 * 220.66444 * 10 9 8 12 12 C 1.52910 * 121.13486 * 259.17796 * 11 10 9 13 13 C 1.53949 * 86.78077 * 209.38575 * 12 11 10 14 14 N 1.46498 * 113.58269 * 139.33921 * 13 12 11 15 15 C 1.36938 * 119.99858 * 107.27989 * 14 13 12 16 16 H 1.07998 * 120.00416 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99593 * 180.02562 * 15 14 13 18 18 N 1.31613 * 119.99901 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47162 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47095 * 119.99593 * 19 17 15 22 22 H 1.48499 * 109.46925 * 239.99781 * 19 17 15 23 23 C 1.52905 * 121.13340 * 150.61497 * 11 10 9 24 24 C 1.52909 * 88.04253 * 24.89691 * 11 10 9 25 25 H 1.09000 * 109.47503 * 59.99629 * 1 2 3 26 26 H 1.08996 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46807 * 299.99483 * 1 2 3 28 28 H 0.97004 * 120.00151 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47152 * 60.00297 * 5 3 2 30 30 H 1.09000 * 109.47267 * 300.00084 * 5 3 2 31 31 H 0.96996 * 120.00391 * 0.02562 * 8 6 5 32 32 H 1.09001 * 112.88003 * 336.14559 * 9 8 6 33 33 H 1.08997 * 113.66354 * 106.19621 * 10 9 8 34 34 H 1.09002 * 113.65722 * 335.13352 * 10 9 8 35 35 H 1.09006 * 113.66074 * 323.85230 * 12 11 10 36 36 H 1.08994 * 113.66448 * 94.91195 * 12 11 10 37 37 H 1.09009 * 113.57633 * 270.12923 * 13 12 11 38 38 H 0.97003 * 119.99770 * 287.27692 * 14 13 12 39 39 H 0.96998 * 120.00002 * 180.02562 * 18 17 15 40 40 H 1.08990 * 113.66878 * 265.09053 * 23 11 10 41 41 H 1.09000 * 113.66430 * 36.05678 * 23 11 10 42 42 H 1.09001 * 113.66026 * 89.57323 * 24 11 10 43 43 H 1.08998 * 113.66179 * 220.53611 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 6 4.1481 2.5881 0.0002 7 8 3.3600 3.5099 0.0016 8 7 5.4732 2.8343 0.0003 9 6 5.9615 4.2155 0.0005 10 6 7.3725 4.3700 -0.5957 11 6 7.6480 5.3618 0.5352 12 6 7.5996 6.8708 0.2927 13 6 8.6435 6.9974 1.4170 14 7 9.6905 7.9830 1.1365 15 6 9.7039 9.1771 1.8067 16 1 8.9425 9.3925 2.5417 17 6 10.6957 10.1112 1.5404 18 7 11.6233 9.8489 0.6443 19 14 10.7137 11.7404 2.4541 20 1 9.5709 11.7895 3.4011 21 1 11.9870 11.8718 3.2069 22 1 10.5971 12.8554 1.4802 23 6 9.0582 5.5500 1.0956 24 6 6.5618 4.6563 1.3479 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.9500 -0.8401 -0.0004 29 1 4.0088 0.6536 -0.8909 30 1 4.0095 0.6532 0.8891 31 1 6.1035 2.0971 -0.0004 32 1 5.2369 4.9213 -0.4056 33 1 7.3814 4.8233 -1.5869 34 1 7.9736 3.4625 -0.5378 35 1 7.9735 7.1686 -0.6870 36 1 6.6378 7.3223 0.5358 37 1 8.2049 7.1154 2.4080 38 1 10.3741 7.7897 0.4761 39 1 12.3165 10.5015 0.4585 40 1 9.2616 4.9465 1.9801 41 1 9.8421 5.4751 0.3420 42 1 6.9351 3.8294 1.9520 43 1 5.9241 5.3382 1.9104 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120992344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:24 Heat of formation + Delta-G solvation = -15.933761 kcal Electronic energy + Delta-G solvation = -23020.536672 eV Core-core repulsion = 19488.526471 eV Total energy + Delta-G solvation = -3532.010201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.71725 -40.01662 -38.57800 -35.81670 -34.83474 -33.61326 -32.36478 -30.92692 -29.43203 -26.81754 -25.73486 -25.16106 -24.20195 -22.70763 -21.13167 -20.48598 -20.00482 -17.82408 -17.69211 -17.22346 -16.98744 -16.28295 -16.04357 -15.71369 -15.21455 -14.75371 -14.65778 -14.17411 -13.88569 -13.67467 -13.39417 -13.33313 -12.79508 -12.65511 -12.56909 -12.49829 -12.18462 -11.86169 -11.59727 -11.22987 -11.15280 -10.82374 -10.74216 -10.39608 -10.22711 -9.97815 -9.76573 -9.65578 -9.61826 -9.48233 -9.32117 -9.00169 -8.83019 -6.91976 -5.75358 -3.03441 2.32687 2.57962 2.58448 3.26871 3.45080 3.51143 3.53190 4.20098 4.53014 4.59938 4.63440 4.71027 4.77693 4.80426 4.83389 4.92795 4.96819 5.12842 5.41730 5.42600 5.48631 5.61662 5.73652 5.84687 5.94672 5.98498 6.00068 6.02282 6.16060 6.24011 6.29100 6.39613 6.45351 6.57753 6.69674 6.97403 7.06499 7.17675 7.40723 7.73914 7.92823 8.19739 8.43697 9.54787 10.13682 10.48070 11.47264 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.045451 B = 0.002212 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.903901 B =12652.730170 C =13014.979495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.743 5.743 3 C 0.508 3.492 4 O -0.489 6.489 5 C -0.166 4.166 6 C 0.509 3.491 7 O -0.495 6.495 8 N -0.722 5.722 9 C 0.125 3.875 10 C -0.130 4.130 11 C -0.101 4.101 12 C -0.142 4.142 13 C 0.168 3.832 14 N -0.714 5.714 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.135 4.135 24 C -0.125 4.125 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.400 0.600 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.397 0.603 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.385 0.615 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 -26.637 -2.478 30.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.397 5.397 3 C 0.292 3.708 4 O -0.361 6.361 5 C -0.209 4.209 6 C 0.293 3.707 7 O -0.367 6.367 8 N -0.374 5.374 9 C 0.021 3.979 10 C -0.168 4.168 11 C -0.103 4.103 12 C -0.183 4.183 13 C 0.056 3.944 14 N -0.351 5.351 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.174 4.174 24 C -0.164 4.164 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.233 0.767 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.231 0.769 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.624 -24.950 -2.351 30.073 hybrid contribution 0.897 -0.146 0.185 0.928 sum -15.727 -25.096 -2.166 29.695 Atomic orbital electron populations 1.21506 0.79470 1.02064 1.02476 1.45799 1.07790 1.08459 1.77645 1.20075 0.89292 0.84006 0.77410 1.90892 1.69383 1.30423 1.45367 1.21609 0.94770 0.98012 1.06548 1.19959 0.82809 0.90440 0.77542 1.90876 1.54450 1.45332 1.46088 1.46037 1.06432 1.08958 1.76023 1.22586 0.95062 0.82665 0.97567 1.23179 0.94775 0.99704 0.99189 1.22092 0.96348 0.95704 0.96119 1.23602 1.01153 0.91225 1.02350 1.21543 0.89672 0.87579 0.95588 1.42427 1.30060 1.15327 1.47330 1.19375 1.08821 0.92849 1.16147 0.91038 1.24760 0.97841 0.98852 0.99617 1.69668 1.16697 1.35665 1.36151 0.86120 0.77214 0.83968 0.78932 1.20519 1.21903 1.21888 1.23259 0.94769 0.99385 1.00029 1.23143 0.97031 0.99819 0.96368 0.92243 0.90708 0.92234 0.76713 0.86155 0.86131 0.76871 0.86859 0.90864 0.89962 0.90129 0.92497 0.90801 0.78140 0.93581 0.92321 0.90245 0.89968 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.70 59.84 0.64 1.13 16 2 N -0.74 -4.22 5.71 -67.08 -0.38 -4.60 16 3 C 0.51 4.93 7.82 -10.99 -0.09 4.85 16 4 O -0.49 -7.73 14.18 -18.96 -0.27 -8.00 16 5 C -0.17 -1.04 6.19 -29.03 -0.18 -1.22 16 6 C 0.51 5.75 7.82 -10.98 -0.09 5.66 16 7 O -0.50 -8.53 13.78 -18.96 -0.26 -8.79 16 8 N -0.72 -6.65 5.35 -52.85 -0.28 -6.93 16 9 C 0.13 1.49 4.24 -66.95 -0.28 1.21 16 10 C -0.13 -1.49 7.59 -26.28 -0.20 -1.69 16 11 C -0.10 -1.43 1.11 -154.71 -0.17 -1.60 16 12 C -0.14 -2.51 7.64 -26.28 -0.20 -2.71 16 13 C 0.17 3.37 4.48 -66.95 -0.30 3.07 16 14 N -0.71 -18.10 5.40 -52.47 -0.28 -18.38 16 15 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 19 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 C -0.14 -2.19 7.59 -26.28 -0.20 -2.39 16 24 C -0.12 -1.58 7.64 -26.28 -0.20 -1.78 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.40 0.74 8.83 -40.82 -0.36 0.38 16 29 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.40 2.24 8.73 -40.82 -0.36 1.89 16 32 H 0.11 1.64 7.47 -51.93 -0.39 1.25 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.79 8.12 -51.93 -0.42 0.36 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.50 8.10 -51.92 -0.42 1.08 16 38 H 0.38 10.30 7.92 -40.82 -0.32 9.97 16 39 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -38.00 359.64 -8.76 -46.76 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.89 Total: 7.50 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.51 Total: -2.94 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.23 Total: -57.61 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.53 Total: -16.79 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.00 -8.76 -46.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120992344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.824 kcal (2) G-P(sol) polarization free energy of solvation -37.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds