Wall clock time and date at job start Tue Mar 31 2020 03:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99794 * 2 1 4 4 O 1.21278 * 120.00010 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99685 * 180.02562 * 3 2 1 6 6 C 1.50708 * 109.46893 * 180.02562 * 5 3 2 7 7 O 1.21276 * 119.99869 * 0.02562 * 6 5 3 8 8 N 1.34776 * 119.99671 * 179.97438 * 6 5 3 9 9 C 1.46499 * 119.99661 * 179.97438 * 8 6 5 10 10 C 1.53957 * 113.58030 * 205.00293 * 9 8 6 11 11 C 1.52917 * 86.77928 * 220.66444 * 10 9 8 12 12 C 1.52910 * 121.13486 * 259.17796 * 11 10 9 13 13 C 1.53949 * 86.78077 * 209.38575 * 12 11 10 14 14 N 1.46498 * 113.58269 * 139.33921 * 13 12 11 15 15 C 1.36938 * 119.99858 * 107.27989 * 14 13 12 16 16 H 1.07998 * 120.00416 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99593 * 180.02562 * 15 14 13 18 18 N 1.31613 * 119.99901 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47162 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47095 * 119.99593 * 19 17 15 22 22 H 1.48499 * 109.46925 * 239.99781 * 19 17 15 23 23 C 1.52905 * 121.13340 * 150.61497 * 11 10 9 24 24 C 1.52909 * 88.04253 * 24.89691 * 11 10 9 25 25 H 1.09000 * 109.47503 * 59.99629 * 1 2 3 26 26 H 1.08996 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46807 * 299.99483 * 1 2 3 28 28 H 0.97004 * 120.00151 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47152 * 60.00297 * 5 3 2 30 30 H 1.09000 * 109.47267 * 300.00084 * 5 3 2 31 31 H 0.96996 * 120.00391 * 0.02562 * 8 6 5 32 32 H 1.09001 * 112.88003 * 336.14559 * 9 8 6 33 33 H 1.08997 * 113.66354 * 106.19621 * 10 9 8 34 34 H 1.09002 * 113.65722 * 335.13352 * 10 9 8 35 35 H 1.09006 * 113.66074 * 323.85230 * 12 11 10 36 36 H 1.08994 * 113.66448 * 94.91195 * 12 11 10 37 37 H 1.09009 * 113.57633 * 270.12923 * 13 12 11 38 38 H 0.97003 * 119.99770 * 287.27692 * 14 13 12 39 39 H 0.96998 * 120.00002 * 180.02562 * 18 17 15 40 40 H 1.08990 * 113.66878 * 265.09053 * 23 11 10 41 41 H 1.09000 * 113.66430 * 36.05678 * 23 11 10 42 42 H 1.09001 * 113.66026 * 89.57323 * 24 11 10 43 43 H 1.08998 * 113.66179 * 220.53611 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 6 4.1481 2.5881 0.0002 7 8 3.3600 3.5099 0.0016 8 7 5.4732 2.8343 0.0003 9 6 5.9615 4.2155 0.0005 10 6 7.3725 4.3700 -0.5957 11 6 7.6480 5.3618 0.5352 12 6 7.5996 6.8708 0.2927 13 6 8.6435 6.9974 1.4170 14 7 9.6905 7.9830 1.1365 15 6 9.7039 9.1771 1.8067 16 1 8.9425 9.3925 2.5417 17 6 10.6957 10.1112 1.5404 18 7 11.6233 9.8489 0.6443 19 14 10.7137 11.7404 2.4541 20 1 9.5709 11.7895 3.4011 21 1 11.9870 11.8718 3.2069 22 1 10.5971 12.8554 1.4802 23 6 9.0582 5.5500 1.0956 24 6 6.5618 4.6563 1.3479 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.9500 -0.8401 -0.0004 29 1 4.0088 0.6536 -0.8909 30 1 4.0095 0.6532 0.8891 31 1 6.1035 2.0971 -0.0004 32 1 5.2369 4.9213 -0.4056 33 1 7.3814 4.8233 -1.5869 34 1 7.9736 3.4625 -0.5378 35 1 7.9735 7.1686 -0.6870 36 1 6.6378 7.3223 0.5358 37 1 8.2049 7.1154 2.4080 38 1 10.3741 7.7897 0.4761 39 1 12.3165 10.5015 0.4585 40 1 9.2616 4.9465 1.9801 41 1 9.8421 5.4751 0.3420 42 1 6.9351 3.8294 1.9520 43 1 5.9241 5.3382 1.9104 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120992344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:24 Heat of formation + Delta-G solvation = -45.466096 kcal Electronic energy + Delta-G solvation = -23021.817290 eV Core-core repulsion = 19488.526471 eV Total energy + Delta-G solvation = -3533.290819 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71101 -40.96095 -39.50218 -37.17792 -35.54252 -35.18208 -33.70288 -31.90245 -31.05585 -27.37429 -26.73635 -26.57273 -26.10344 -23.93154 -22.05022 -21.45463 -21.16790 -19.41805 -18.66753 -18.36454 -17.95946 -17.01754 -16.98245 -16.80668 -16.41240 -16.01040 -15.88774 -15.48483 -15.19628 -14.87702 -14.41787 -14.25945 -14.03288 -13.73642 -13.60084 -13.17148 -13.06604 -13.03454 -12.97701 -12.88987 -12.79875 -12.35948 -12.31046 -12.10541 -11.84809 -11.28814 -11.12776 -11.03884 -10.89316 -10.75587 -10.42134 -10.06961 -9.91164 -8.97508 -7.95670 -5.23298 1.45991 1.46797 1.56886 1.66841 1.78000 1.96351 2.55582 2.63303 3.35836 3.52672 3.56528 3.60716 3.71727 3.88115 3.99624 4.10222 4.28890 4.34866 4.43842 4.44986 4.49526 4.59997 4.62898 4.64058 4.82791 4.86089 4.95911 4.97729 5.02218 5.07993 5.12441 5.16855 5.29821 5.44622 5.49869 5.57919 5.70097 5.71564 6.27556 6.62511 6.71235 7.33096 7.35289 7.48732 8.11247 8.34294 9.27791 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.045451 B = 0.002212 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.903901 B =12652.730170 C =13014.979495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.722 5.722 3 C 0.497 3.503 4 O -0.564 6.564 5 C -0.151 4.151 6 C 0.500 3.500 7 O -0.564 6.564 8 N -0.703 5.703 9 C 0.129 3.871 10 C -0.113 4.113 11 C -0.091 4.091 12 C -0.142 4.142 13 C 0.145 3.855 14 N -0.728 5.728 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.972 3.028 20 H -0.268 1.268 21 H -0.291 1.291 22 H -0.294 1.294 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.042 0.958 26 H 0.114 0.886 27 H 0.041 0.959 28 H 0.422 0.578 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.421 0.579 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.345 -30.322 -2.063 34.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.377 5.377 3 C 0.283 3.717 4 O -0.441 6.441 5 C -0.193 4.193 6 C 0.286 3.714 7 O -0.441 6.441 8 N -0.356 5.356 9 C 0.023 3.977 10 C -0.151 4.151 11 C -0.092 4.092 12 C -0.183 4.183 13 C 0.036 3.964 14 N -0.365 5.365 15 C -0.376 4.376 16 H 0.091 0.909 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.801 3.199 20 H -0.193 1.193 21 H -0.218 1.218 22 H -0.222 1.222 23 C -0.158 4.158 24 C -0.158 4.158 25 H 0.060 0.940 26 H 0.133 0.867 27 H 0.060 0.940 28 H 0.260 0.740 29 H 0.183 0.817 30 H 0.183 0.817 31 H 0.259 0.741 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.427 -28.773 -1.922 33.188 hybrid contribution 0.753 0.915 0.064 1.187 sum -15.674 -27.858 -1.857 32.019 Atomic orbital electron populations 1.21597 0.79485 1.04095 1.00822 1.45674 1.07952 1.08521 1.75561 1.20796 0.90912 0.83808 0.76193 1.90878 1.71005 1.33152 1.49027 1.21653 0.92009 0.94950 1.10651 1.20875 0.82620 0.91984 0.75884 1.90870 1.56207 1.47860 1.49173 1.45806 1.06499 1.08433 1.74901 1.22220 0.94654 0.83834 0.96982 1.23142 0.94358 0.99892 0.97709 1.21899 0.95352 0.93784 0.98163 1.23418 0.99643 0.94713 1.00489 1.21927 0.89500 0.89033 0.95961 1.42596 1.31134 1.15723 1.47096 1.19735 1.08289 0.93917 1.15623 0.90920 1.25553 0.98005 1.02325 1.01026 1.69812 1.17516 1.36677 1.37958 0.85095 0.77362 0.79713 0.77738 1.19283 1.21794 1.22151 1.23076 0.95817 0.96152 1.00717 1.23180 0.95919 1.00018 0.96658 0.93961 0.86709 0.94005 0.74001 0.81693 0.81739 0.74105 0.90161 0.91247 0.86443 0.91571 0.93334 0.91465 0.79352 0.94019 0.90474 0.90527 0.87227 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.70 127.77 1.37 2.19 16 2 N -0.72 -6.39 5.71 -484.54 -2.77 -9.16 16 3 C 0.50 8.92 7.82 87.66 0.69 9.60 16 4 O -0.56 -18.49 14.18 20.42 0.29 -18.20 16 5 C -0.15 -1.31 6.19 29.10 0.18 -1.13 16 6 C 0.50 10.40 7.82 87.66 0.69 11.08 16 7 O -0.56 -20.00 13.78 20.42 0.28 -19.71 16 8 N -0.70 -10.72 5.35 -439.51 -2.35 -13.07 16 9 C 0.13 2.86 4.24 45.63 0.19 3.05 16 10 C -0.11 -2.27 7.59 30.89 0.23 -2.04 16 11 C -0.09 -2.43 1.11 -52.31 -0.06 -2.48 16 12 C -0.14 -5.11 7.64 30.88 0.24 -4.87 16 13 C 0.15 5.88 4.48 45.63 0.20 6.08 16 14 N -0.73 -37.71 5.40 -319.91 -1.73 -39.44 16 15 C -0.24 -13.96 9.97 84.04 0.84 -13.12 16 16 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 17 C -0.08 -4.52 5.50 84.87 0.47 -4.06 16 18 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 19 Si 0.97 47.31 29.55 68.60 2.03 49.34 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 23 C -0.12 -3.66 7.59 30.88 0.23 -3.42 16 24 C -0.12 -2.78 7.64 30.88 0.24 -2.54 16 25 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.42 -0.21 8.83 -92.71 -0.82 -1.03 16 29 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.17 0.02 8.14 -2.39 -0.02 0.01 16 31 H 0.42 2.54 8.73 -92.71 -0.81 1.73 16 32 H 0.08 2.38 7.47 -2.39 -0.02 2.37 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.12 1.62 8.12 -2.39 -0.02 1.60 16 35 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.78 8.10 -2.38 -0.02 2.76 16 38 H 0.37 20.58 7.92 -92.71 -0.73 19.85 16 39 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 41 H 0.08 2.44 8.12 -2.39 -0.02 2.42 16 42 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -90.11 359.64 0.21 -89.90 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -1.32 Total: 21.92 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 5.50 Total: -1.65 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -6.57 Total: -121.59 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: 0.57 Total: -37.92 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -90.11 0.21 -89.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120992344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.436 kcal (2) G-P(sol) polarization free energy of solvation -90.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds