Wall clock time and date at job start Tue Mar 31 2020 04:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47289 * 2 1 4 4 C 1.53006 * 109.46822 * 239.99980 * 2 1 3 5 5 C 1.53000 * 109.46846 * 174.99943 * 4 2 1 6 6 H 1.09002 * 109.47398 * 305.00335 * 5 4 2 7 7 C 1.52997 * 109.47060 * 185.00166 * 5 4 2 8 8 N 1.46500 * 109.47023 * 65.00406 * 5 4 2 9 9 C 1.34777 * 120.00075 * 204.99547 * 8 5 4 10 10 O 1.21692 * 119.99797 * 0.02562 * 9 8 5 11 11 C 1.46775 * 120.00297 * 179.97438 * 9 8 5 12 12 C 1.41480 * 126.51276 * 359.68781 * 11 9 8 13 13 N 1.30294 * 108.18582 * 179.85111 * 12 11 9 14 14 N 1.39891 * 109.22944 * 0.41888 * 13 12 11 15 15 C 1.46498 * 125.74487 * 179.75464 * 14 13 12 16 16 C 1.34847 * 108.50684 * 359.72885 * 14 13 12 17 17 N 1.38017 * 126.44122 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.47194 * 120.00598 * 2 1 3 19 19 C 1.36941 * 119.99638 * 274.99689 * 18 2 1 20 20 H 1.07997 * 119.99986 * 359.97438 * 19 18 2 21 21 C 1.38817 * 119.99779 * 180.02562 * 19 18 2 22 22 N 1.31611 * 120.00298 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99660 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47352 * 59.99716 * 23 21 19 25 25 H 1.48506 * 109.46857 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47082 * 299.99617 * 23 21 19 27 27 H 1.09002 * 109.46611 * 299.99944 * 1 2 3 28 28 H 1.09004 * 109.47264 * 59.99463 * 1 2 3 29 29 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46824 * 55.00360 * 4 2 1 31 31 H 1.08991 * 109.47210 * 295.00444 * 4 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.47153 * 300.00319 * 7 5 4 34 34 H 1.08998 * 109.47533 * 59.99948 * 7 5 4 35 35 H 0.96997 * 120.00274 * 24.99518 * 8 5 4 36 36 H 1.07997 * 125.91221 * 0.02562 * 12 11 9 37 37 H 1.08996 * 109.47472 * 269.97045 * 15 14 13 38 38 H 1.09000 * 109.47079 * 29.97266 * 15 14 13 39 39 H 1.09006 * 109.47147 * 149.96732 * 15 14 13 40 40 H 0.97001 * 119.99451 * 179.97438 * 17 16 14 41 41 H 0.96996 * 120.00414 * 359.97438 * 17 16 14 42 42 H 0.96997 * 120.00403 * 94.99971 * 18 2 1 43 43 H 0.96992 * 120.00665 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3343 -0.1825 9 6 5.3747 -0.9913 0.2732 10 8 5.9879 -0.0824 -0.2548 11 6 5.9645 -1.7132 1.4069 12 6 5.3743 -2.7804 2.1242 13 7 6.2071 -3.1555 3.0533 14 7 7.3549 -2.3582 2.9926 15 6 8.5196 -2.4661 3.8746 16 6 7.2090 -1.4740 1.9850 17 7 8.1214 -0.5130 1.5989 18 7 2.0183 -0.6907 1.1961 19 6 2.1491 -0.0076 2.3757 20 1 1.8927 1.0404 2.4241 21 6 2.6124 -0.6620 3.5090 22 7 2.9254 -1.9389 3.4498 23 14 2.7901 0.2697 5.1182 24 1 1.4675 0.8055 5.5288 25 1 3.3004 -0.6485 6.1680 26 1 3.7447 1.3929 4.9371 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -0.2617 -2.1370 31 1 1.7515 -1.7714 -1.2057 32 1 5.1507 -1.1486 -2.6700 33 1 3.7721 -2.2741 -2.6701 34 1 3.6263 -0.6887 -3.4658 35 1 3.6647 -2.0585 0.2385 36 1 4.4028 -3.2115 1.9328 37 1 8.3783 -1.8232 4.7434 38 1 8.6329 -3.4996 4.2020 39 1 9.4143 -2.1558 3.3347 40 1 7.9190 0.0772 0.8562 41 1 8.9649 -0.4280 2.0702 42 1 2.2490 -1.6319 1.1525 43 1 3.2494 -2.3961 4.2415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134197108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:33 Heat of formation + Delta-G solvation = 52.004362 kcal Electronic energy + Delta-G solvation = -25558.244888 eV Core-core repulsion = 22061.473457 eV Total energy + Delta-G solvation = -3496.771432 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60157 -38.64796 -36.49956 -34.44669 -33.88321 -32.60462 -31.99605 -30.43250 -28.45266 -27.80469 -26.46550 -26.17934 -23.52332 -22.34345 -20.79903 -20.09486 -19.86235 -19.19820 -17.39944 -17.03248 -16.30417 -15.72147 -15.31246 -15.18018 -14.69280 -14.06044 -13.94136 -13.68394 -13.60397 -13.06086 -12.84389 -12.60296 -12.56775 -12.29493 -12.21912 -12.00152 -11.71897 -11.62120 -11.54250 -10.89374 -10.74568 -10.63509 -10.62077 -10.24080 -10.17117 -10.09397 -9.78918 -9.54466 -8.94335 -8.83053 -8.34190 -8.12496 -7.16985 -6.78742 -5.68155 -2.90702 2.47743 2.80717 3.20672 3.49605 3.55062 3.55807 4.10376 4.17045 4.51990 4.69740 4.83838 5.23911 5.29126 5.49222 5.55598 5.59945 5.68623 5.72417 5.81643 5.91045 6.01076 6.08293 6.13027 6.18673 6.25445 6.34744 6.43776 6.48708 6.60991 6.69532 6.73559 6.83893 6.96295 7.15876 7.39413 7.48243 7.81250 7.81839 7.92541 8.46252 8.52711 8.61589 9.28045 9.64642 10.17648 10.53607 11.55231 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.008030 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.947513 B = 3485.893854 C = 5170.392223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.133 4.133 5 C 0.153 3.847 6 H 0.080 0.920 7 C -0.161 4.161 8 N -0.696 5.696 9 C 0.618 3.382 10 O -0.596 6.596 11 C -0.356 4.356 12 C 0.170 3.830 13 N -0.323 5.323 14 N -0.411 5.411 15 C 0.108 3.892 16 C 0.417 3.583 17 N -0.839 5.839 18 N -0.713 5.713 19 C -0.229 4.229 20 H 0.063 0.937 21 C -0.001 4.001 22 N -0.924 5.924 23 Si 0.897 3.103 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.293 1.293 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.402 0.598 36 H 0.194 0.806 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.427 0.573 41 H 0.391 0.609 42 H 0.377 0.623 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.598 -1.545 -7.021 10.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 H 0.064 0.936 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.098 0.902 7 C -0.220 4.220 8 N -0.346 5.346 9 C 0.409 3.591 10 O -0.480 6.480 11 C -0.375 4.375 12 C -0.020 4.020 13 N -0.141 5.141 14 N -0.199 5.199 15 C -0.034 4.034 16 C 0.183 3.817 17 N -0.389 5.389 18 N -0.356 5.356 19 C -0.361 4.361 20 H 0.081 0.919 21 C -0.197 4.197 22 N -0.572 5.572 23 Si 0.730 3.270 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.220 1.220 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.239 0.761 36 H 0.211 0.789 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.263 0.737 41 H 0.219 0.781 42 H 0.212 0.788 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.262 -1.675 -6.190 10.459 hybrid contribution 0.016 0.890 0.772 1.179 sum 8.278 -0.785 -5.418 9.924 Atomic orbital electron populations 1.22429 0.99531 1.00624 0.99747 1.20256 0.91508 0.95691 0.86520 0.93623 1.22202 0.94272 1.01501 0.99223 1.20712 0.92236 0.97217 0.85041 0.90167 1.22209 1.01691 1.00704 0.97368 1.45597 1.17724 1.37723 1.33578 1.16800 0.80477 0.81135 0.80692 1.90559 1.63069 1.32738 1.61620 1.19270 0.96920 1.11421 1.09888 1.23871 0.96814 0.92214 0.89088 1.77149 0.94031 1.18175 1.24772 1.48146 1.16763 1.28340 1.26603 1.21601 0.84341 1.04231 0.93232 1.18075 0.90121 0.85889 0.87567 1.41641 1.18887 1.37825 1.40580 1.42369 1.77927 1.10034 1.05248 1.19054 1.36157 0.93576 0.87264 0.91926 1.24444 1.02222 0.95907 0.97174 1.69407 1.50811 1.08125 1.28875 0.86425 0.77340 0.78671 0.84606 1.21790 1.21998 1.21988 0.92989 0.94758 0.93649 0.91098 0.91831 0.92491 0.92947 0.92484 0.76092 0.78914 0.91551 0.89323 0.90923 0.73672 0.78124 0.78794 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.17 3.22 2.89 -67.93 -0.20 3.02 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -2.05 4.43 -26.73 -0.12 -2.17 16 5 C 0.15 2.55 2.57 -67.93 -0.17 2.37 16 6 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 7 C -0.16 -2.25 9.48 37.16 0.35 -1.90 16 8 N -0.70 -13.03 3.79 -55.08 -0.21 -13.24 16 9 C 0.62 12.93 7.76 -12.81 -0.10 12.83 16 10 O -0.60 -13.13 14.80 5.20 0.08 -13.05 16 11 C -0.36 -7.36 6.15 -104.82 -0.64 -8.00 16 12 C 0.17 3.54 10.11 -16.97 -0.17 3.37 16 13 N -0.32 -6.60 12.47 30.88 0.38 -6.21 16 14 N -0.41 -7.19 4.00 -66.82 -0.27 -7.46 16 15 C 0.11 1.29 11.25 59.85 0.67 1.96 16 16 C 0.42 7.65 7.98 -153.78 -1.23 6.42 16 17 N -0.84 -12.24 9.02 31.40 0.28 -11.95 16 18 N -0.71 -16.13 3.84 -53.42 -0.21 -16.33 16 19 C -0.23 -6.05 9.93 -15.06 -0.15 -6.19 16 20 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 21 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 22 N -0.92 -24.66 10.84 55.49 0.60 -24.06 16 23 Si 0.90 22.79 29.55 -169.99 -5.02 17.77 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 7.61 5.45 -40.82 -0.22 7.38 16 36 H 0.19 4.06 6.74 -52.49 -0.35 3.71 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.62 7.46 -51.93 -0.39 0.23 16 40 H 0.43 6.67 7.01 -40.82 -0.29 6.39 16 41 H 0.39 4.18 8.04 -40.82 -0.33 3.85 16 42 H 0.38 8.67 5.70 -40.82 -0.23 8.44 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -31.12 350.80 -6.97 -38.09 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -6.40 Total: 22.08 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -1.50 Total: 9.08 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: 0.59 Total: -79.26 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.12 -6.97 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134197108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.092 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds