Wall clock time and date at job start Tue Mar 31 2020 04:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47289 * 2 1 4 4 C 1.53006 * 109.46822 * 239.99980 * 2 1 3 5 5 C 1.53000 * 109.46846 * 174.99943 * 4 2 1 6 6 H 1.09002 * 109.47398 * 305.00335 * 5 4 2 7 7 C 1.52997 * 109.47060 * 185.00166 * 5 4 2 8 8 N 1.46500 * 109.47023 * 65.00406 * 5 4 2 9 9 C 1.34777 * 120.00075 * 204.99547 * 8 5 4 10 10 O 1.21692 * 119.99797 * 0.02562 * 9 8 5 11 11 C 1.46775 * 120.00297 * 179.97438 * 9 8 5 12 12 C 1.41480 * 126.51276 * 359.68781 * 11 9 8 13 13 N 1.30294 * 108.18582 * 179.85111 * 12 11 9 14 14 N 1.39891 * 109.22944 * 0.41888 * 13 12 11 15 15 C 1.46498 * 125.74487 * 179.75464 * 14 13 12 16 16 C 1.34847 * 108.50684 * 359.72885 * 14 13 12 17 17 N 1.38017 * 126.44122 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.47194 * 120.00598 * 2 1 3 19 19 C 1.36941 * 119.99638 * 274.99689 * 18 2 1 20 20 H 1.07997 * 119.99986 * 359.97438 * 19 18 2 21 21 C 1.38817 * 119.99779 * 180.02562 * 19 18 2 22 22 N 1.31611 * 120.00298 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99660 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47352 * 59.99716 * 23 21 19 25 25 H 1.48506 * 109.46857 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47082 * 299.99617 * 23 21 19 27 27 H 1.09002 * 109.46611 * 299.99944 * 1 2 3 28 28 H 1.09004 * 109.47264 * 59.99463 * 1 2 3 29 29 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46824 * 55.00360 * 4 2 1 31 31 H 1.08991 * 109.47210 * 295.00444 * 4 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.47153 * 300.00319 * 7 5 4 34 34 H 1.08998 * 109.47533 * 59.99948 * 7 5 4 35 35 H 0.96997 * 120.00274 * 24.99518 * 8 5 4 36 36 H 1.07997 * 125.91221 * 0.02562 * 12 11 9 37 37 H 1.08996 * 109.47472 * 269.97045 * 15 14 13 38 38 H 1.09000 * 109.47079 * 29.97266 * 15 14 13 39 39 H 1.09006 * 109.47147 * 149.96732 * 15 14 13 40 40 H 0.97001 * 119.99451 * 179.97438 * 17 16 14 41 41 H 0.96996 * 120.00414 * 359.97438 * 17 16 14 42 42 H 0.96997 * 120.00403 * 94.99971 * 18 2 1 43 43 H 0.96992 * 120.00665 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3343 -0.1825 9 6 5.3747 -0.9913 0.2732 10 8 5.9879 -0.0824 -0.2548 11 6 5.9645 -1.7132 1.4069 12 6 5.3743 -2.7804 2.1242 13 7 6.2071 -3.1555 3.0533 14 7 7.3549 -2.3582 2.9926 15 6 8.5196 -2.4661 3.8746 16 6 7.2090 -1.4740 1.9850 17 7 8.1214 -0.5130 1.5989 18 7 2.0183 -0.6907 1.1961 19 6 2.1491 -0.0076 2.3757 20 1 1.8927 1.0404 2.4241 21 6 2.6124 -0.6620 3.5090 22 7 2.9254 -1.9389 3.4498 23 14 2.7901 0.2697 5.1182 24 1 1.4675 0.8055 5.5288 25 1 3.3004 -0.6485 6.1680 26 1 3.7447 1.3929 4.9371 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -0.2617 -2.1370 31 1 1.7515 -1.7714 -1.2057 32 1 5.1507 -1.1486 -2.6700 33 1 3.7721 -2.2741 -2.6701 34 1 3.6263 -0.6887 -3.4658 35 1 3.6647 -2.0585 0.2385 36 1 4.4028 -3.2115 1.9328 37 1 8.3783 -1.8232 4.7434 38 1 8.6329 -3.4996 4.2020 39 1 9.4143 -2.1558 3.3347 40 1 7.9190 0.0772 0.8562 41 1 8.9649 -0.4280 2.0702 42 1 2.2490 -1.6319 1.1525 43 1 3.2494 -2.3961 4.2415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134197108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:33 Heat of formation + Delta-G solvation = 30.724181 kcal Electronic energy + Delta-G solvation = -25559.167666 eV Core-core repulsion = 22061.473457 eV Total energy + Delta-G solvation = -3497.694209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03235 -40.13504 -38.06293 -35.84996 -35.46422 -34.00936 -33.65138 -31.92206 -30.16824 -29.23037 -27.66116 -27.47463 -25.45726 -23.78786 -22.20920 -21.61435 -21.23960 -20.69010 -18.98709 -18.74428 -17.65800 -17.16818 -16.69883 -16.54667 -16.44500 -15.62954 -15.43749 -15.37433 -15.16995 -14.50150 -14.22692 -14.07848 -13.90199 -13.54323 -13.46451 -13.39717 -13.23681 -13.05157 -12.84206 -12.72683 -12.56528 -12.20014 -12.13466 -11.99899 -11.62445 -11.60589 -11.46437 -11.31112 -10.78786 -10.51131 -9.76947 -9.59869 -8.70532 -8.56726 -7.75184 -4.93637 1.04583 1.43095 1.46196 1.48885 1.52636 1.65066 2.63574 2.73530 2.90250 3.00085 3.59913 3.75607 3.93979 4.11903 4.28840 4.30088 4.39791 4.45947 4.54797 4.61729 4.66550 4.77939 4.79294 4.91295 4.94688 4.95924 5.04384 5.17362 5.22201 5.26848 5.46940 5.51201 5.60233 5.68328 5.71504 5.88745 6.03607 6.45677 6.47154 6.73318 6.96708 7.15604 7.56860 7.72961 8.29673 8.57192 9.44585 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.008030 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.947513 B = 3485.893854 C = 5170.392223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.026 0.974 4 C -0.119 4.119 5 C 0.149 3.851 6 H 0.054 0.946 7 C -0.150 4.150 8 N -0.692 5.692 9 C 0.608 3.392 10 O -0.616 6.616 11 C -0.390 4.390 12 C 0.164 3.836 13 N -0.345 5.345 14 N -0.407 5.407 15 C 0.095 3.905 16 C 0.416 3.584 17 N -0.820 5.820 18 N -0.715 5.715 19 C -0.229 4.229 20 H 0.050 0.950 21 C -0.039 4.039 22 N -0.921 5.921 23 Si 0.934 3.066 24 H -0.288 1.288 25 H -0.302 1.302 26 H -0.303 1.303 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.400 0.600 36 H 0.183 0.817 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.425 0.575 41 H 0.412 0.588 42 H 0.375 0.625 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.948 -1.575 -8.224 11.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.044 0.956 4 C -0.158 4.158 5 C 0.045 3.955 6 H 0.072 0.928 7 C -0.208 4.208 8 N -0.341 5.341 9 C 0.399 3.601 10 O -0.502 6.502 11 C -0.409 4.409 12 C -0.025 4.025 13 N -0.165 5.165 14 N -0.196 5.196 15 C -0.045 4.045 16 C 0.180 3.820 17 N -0.372 5.372 18 N -0.358 5.358 19 C -0.361 4.361 20 H 0.068 0.932 21 C -0.234 4.234 22 N -0.571 5.571 23 Si 0.768 3.232 24 H -0.215 1.215 25 H -0.229 1.229 26 H -0.231 1.231 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.237 0.763 36 H 0.200 0.800 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.260 0.740 41 H 0.243 0.757 42 H 0.210 0.790 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.612 -1.697 -7.404 11.484 hybrid contribution -0.040 0.959 1.142 1.492 sum 8.572 -0.738 -6.262 10.641 Atomic orbital electron populations 1.22272 0.97844 1.00948 1.00215 1.20464 0.92579 0.94809 0.86708 0.95583 1.22117 0.93105 1.01987 0.98566 1.20864 0.93152 0.95834 0.85686 0.92751 1.22094 1.00570 1.01669 0.96487 1.45650 1.17097 1.37478 1.33911 1.17007 0.81069 0.81098 0.80915 1.90525 1.63700 1.33614 1.62391 1.19483 0.98394 1.12244 1.10742 1.23674 0.96702 0.92588 0.89561 1.77023 0.95199 1.19370 1.24882 1.48436 1.17046 1.27341 1.26741 1.22071 0.83666 1.05468 0.93291 1.18184 0.90106 0.86298 0.87409 1.41564 1.19034 1.36361 1.40210 1.42404 1.78079 1.09877 1.05419 1.19115 1.35195 0.93155 0.88667 0.93213 1.24815 1.03410 0.96657 0.98561 1.69500 1.51289 1.08101 1.28171 0.85842 0.76895 0.77428 0.83082 1.21502 1.22882 1.23126 0.95421 0.91397 0.93326 0.87542 0.90664 0.94275 0.91623 0.89782 0.76306 0.80039 0.90877 0.88172 0.87153 0.73985 0.75702 0.79028 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.49 71.98 0.68 -4.35 16 2 C 0.16 5.98 2.89 44.99 0.13 6.11 16 3 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 4 C -0.12 -3.37 4.43 30.60 0.14 -3.24 16 5 C 0.15 4.80 2.57 44.99 0.12 4.91 16 6 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 7 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 8 N -0.69 -26.00 3.79 -446.40 -1.69 -27.69 16 9 C 0.61 25.77 7.76 86.47 0.67 26.44 16 10 O -0.62 -27.45 14.80 -4.32 -0.06 -27.51 16 11 C -0.39 -16.29 6.15 -19.99 -0.12 -16.42 16 12 C 0.16 6.98 10.11 85.72 0.87 7.85 16 13 N -0.35 -14.20 12.47 -56.23 -0.70 -14.90 16 14 N -0.41 -13.86 4.00 -365.31 -1.46 -15.32 16 15 C 0.09 2.04 11.25 127.77 1.44 3.48 16 16 C 0.42 15.00 7.98 132.69 1.06 16.06 16 17 N -0.82 -22.78 9.02 -54.57 -0.49 -23.27 16 18 N -0.71 -32.36 3.84 -322.93 -1.24 -33.60 16 19 C -0.23 -12.20 9.93 84.03 0.83 -11.36 16 20 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 21 C -0.04 -2.14 5.50 84.86 0.47 -1.68 16 22 N -0.92 -49.88 10.84 21.65 0.23 -49.64 16 23 Si 0.93 47.33 29.55 68.60 2.03 49.36 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 25 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 26 H -0.30 -15.75 7.11 99.48 0.71 -15.05 16 27 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.40 15.28 5.45 -92.71 -0.51 14.77 16 36 H 0.18 7.94 6.74 -2.91 -0.02 7.92 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.11 1.51 7.46 -2.38 -0.02 1.50 16 40 H 0.43 12.89 7.01 -92.71 -0.65 12.24 16 41 H 0.41 7.77 8.04 -92.71 -0.75 7.03 16 42 H 0.38 17.28 5.70 -92.71 -0.53 16.75 16 43 H 0.25 13.74 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -68.44 350.80 2.20 -66.24 By element: Atomic # 1 Polarization: 53.07 SS G_CDS: -1.37 Total: 51.70 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 6.96 Total: 24.62 kcal Atomic # 7 Polarization: -159.06 SS G_CDS: -5.35 Total: -164.41 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.06 Total: -27.51 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -68.44 2.20 -66.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134197108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.967 kcal (2) G-P(sol) polarization free energy of solvation -68.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds