Wall clock time and date at job start Tue Mar 31 2020 04:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.52996 * 109.46775 * 240.00268 * 2 1 3 5 5 C 1.53008 * 109.47146 * 174.99990 * 4 2 1 6 6 H 1.09001 * 109.46834 * 304.99593 * 5 4 2 7 7 C 1.52999 * 109.47050 * 184.99930 * 5 4 2 8 8 N 1.46495 * 109.46852 * 64.99812 * 5 4 2 9 9 C 1.36939 * 119.99994 * 205.00341 * 8 5 4 10 10 H 1.08001 * 119.99531 * 359.97438 * 9 8 5 11 11 C 1.38810 * 120.00320 * 180.02562 * 9 8 5 12 12 N 1.31616 * 119.99794 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99967 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47440 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47139 * 119.99965 * 13 11 9 16 16 H 1.48501 * 109.46973 * 240.00024 * 13 11 9 17 17 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 18 18 C 1.34784 * 119.99864 * 274.99655 * 17 2 1 19 19 O 1.21691 * 119.99708 * 359.72416 * 18 17 2 20 20 C 1.46768 * 120.00280 * 179.72586 * 18 17 2 21 21 C 1.41487 * 126.51579 * 359.68904 * 20 18 17 22 22 N 1.30288 * 108.19066 * 179.84970 * 21 20 18 23 23 N 1.39891 * 109.22902 * 0.41516 * 22 21 20 24 24 C 1.46499 * 125.74481 * 179.75563 * 23 22 21 25 25 C 1.34848 * 108.50903 * 359.73203 * 23 22 21 26 26 N 1.38005 * 126.44868 * 180.02562 * 25 23 22 27 27 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 29 29 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 30 30 H 1.09004 * 109.47220 * 294.99561 * 4 2 1 31 31 H 1.09006 * 109.47725 * 55.00015 * 4 2 1 32 32 H 1.09001 * 109.47027 * 299.99544 * 7 5 4 33 33 H 1.08996 * 109.47211 * 60.00116 * 7 5 4 34 34 H 1.09001 * 109.46564 * 179.97438 * 7 5 4 35 35 H 0.96996 * 120.00631 * 24.99950 * 8 5 4 36 36 H 0.97009 * 119.99887 * 179.97438 * 12 11 9 37 37 H 0.97000 * 120.00740 * 94.72347 * 17 2 1 38 38 H 1.08003 * 125.90795 * 0.02562 * 21 20 18 39 39 H 1.09001 * 109.47225 * 269.96933 * 24 23 22 40 40 H 1.08995 * 109.47701 * 29.97326 * 24 23 22 41 41 H 1.09002 * 109.47321 * 149.97698 * 24 23 22 42 42 H 0.97003 * 120.00257 * 179.97438 * 26 25 23 43 43 H 0.96999 * 119.99915 * 359.96635 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2250 -2.6242 8 7 4.1536 -1.3342 -0.1826 9 6 5.3943 -0.9856 0.2805 10 1 5.9388 -0.1794 -0.1886 11 6 5.9525 -1.6690 1.3520 12 7 5.2891 -2.6518 1.9233 13 14 7.6452 -1.1939 1.9832 14 1 8.1765 -0.0668 1.1752 15 1 7.5448 -0.7796 3.4057 16 1 8.5604 -2.3579 1.8700 17 7 2.0183 -0.6907 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8625 1.1637 2.4105 20 6 2.6306 -0.7116 3.5570 21 6 2.9930 -2.0759 3.6524 22 7 3.3728 -2.3112 4.8763 23 7 3.2686 -1.1344 5.6253 24 6 3.5981 -0.9919 7.0457 25 6 2.8142 -0.1530 4.8198 26 7 2.5764 1.1581 5.1787 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.7516 -1.7715 -1.2056 31 1 1.6053 -0.2617 -2.1371 32 1 3.7721 -2.2741 -2.6701 33 1 3.6262 -0.6886 -3.4658 34 1 5.1506 -1.1476 -2.6703 35 1 3.6647 -2.0584 0.2385 36 1 5.6793 -3.1296 2.6719 37 1 2.2452 -1.6328 1.1536 38 1 2.9629 -2.7970 2.8489 39 1 2.7129 -1.2000 7.6467 40 1 4.3886 -1.6951 7.3076 41 1 3.9379 0.0255 7.2396 42 1 2.2483 1.7896 4.5195 43 1 2.7374 1.4483 6.0902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134197109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:36 Heat of formation + Delta-G solvation = 30.344468 kcal Electronic energy + Delta-G solvation = -25553.665684 eV Core-core repulsion = 22055.955009 eV Total energy + Delta-G solvation = -3497.710675 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03582 -40.13531 -38.06301 -35.85500 -35.46478 -34.00834 -33.65655 -31.92030 -30.16905 -29.23387 -27.66661 -27.47423 -25.46145 -23.79061 -22.21488 -21.61377 -21.24141 -20.69311 -18.98793 -18.75025 -17.66139 -17.17114 -16.69717 -16.53569 -16.45906 -15.62436 -15.43764 -15.38012 -15.17083 -14.50575 -14.22721 -14.08563 -13.91313 -13.53783 -13.48307 -13.39579 -13.23881 -13.05581 -12.87563 -12.73802 -12.53955 -12.20265 -12.08129 -11.99963 -11.63175 -11.60916 -11.47090 -11.30912 -10.80034 -10.51307 -9.77014 -9.59782 -8.70643 -8.56747 -7.75437 -4.93845 1.04656 1.41526 1.46381 1.50387 1.52543 1.63965 2.63369 2.73627 2.90531 2.99260 3.59959 3.74100 3.93774 4.11781 4.28671 4.29779 4.40797 4.45911 4.54425 4.61162 4.66589 4.77301 4.78845 4.91175 4.94357 4.95822 5.04222 5.17361 5.22275 5.26840 5.46903 5.51220 5.59882 5.68739 5.71625 5.87959 6.03531 6.45508 6.46961 6.72843 6.96537 7.15244 7.56725 7.72904 8.29608 8.57007 9.44631 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.008018 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.129328 B = 3491.121415 C = 5173.802398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.149 3.851 3 H 0.055 0.945 4 C -0.120 4.120 5 C 0.163 3.837 6 H 0.026 0.974 7 C -0.153 4.153 8 N -0.715 5.715 9 C -0.226 4.226 10 H 0.050 0.950 11 C -0.041 4.041 12 N -0.921 5.921 13 Si 0.934 3.066 14 H -0.284 1.284 15 H -0.313 1.313 16 H -0.298 1.298 17 N -0.692 5.692 18 C 0.608 3.392 19 O -0.616 6.616 20 C -0.389 4.389 21 C 0.163 3.837 22 N -0.345 5.345 23 N -0.407 5.407 24 C 0.095 3.905 25 C 0.416 3.584 26 N -0.820 5.820 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.375 0.625 36 H 0.245 0.755 37 H 0.400 0.600 38 H 0.182 0.818 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.425 0.575 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 4.049 3.419 11.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.045 3.955 3 H 0.073 0.927 4 C -0.158 4.158 5 C 0.054 3.946 6 H 0.044 0.956 7 C -0.213 4.213 8 N -0.358 5.358 9 C -0.358 4.358 10 H 0.068 0.932 11 C -0.236 4.236 12 N -0.571 5.571 13 Si 0.768 3.232 14 H -0.210 1.210 15 H -0.242 1.242 16 H -0.226 1.226 17 N -0.341 5.341 18 C 0.399 3.601 19 O -0.502 6.502 20 C -0.408 4.408 21 C -0.026 4.026 22 N -0.164 5.164 23 N -0.196 5.196 24 C -0.045 4.045 25 C 0.180 3.820 26 N -0.372 5.372 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.210 0.790 36 H 0.054 0.946 37 H 0.237 0.763 38 H 0.199 0.801 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.260 0.740 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.755 4.016 4.367 11.417 hybrid contribution 1.350 0.483 0.268 1.459 sum -8.404 4.499 4.635 10.600 Atomic orbital electron populations 1.22101 0.94195 1.02450 1.02093 1.20862 0.94054 0.96172 0.84444 0.92710 1.22118 0.94820 1.01485 0.97353 1.20465 0.92183 0.94282 0.87631 0.95568 1.22272 0.99949 1.00814 0.98254 1.42420 1.17547 1.40086 1.35742 1.19180 0.94391 1.12075 1.10177 0.93177 1.24824 0.99483 0.99625 0.99635 1.69535 1.37450 1.24547 1.25552 0.85669 0.83799 0.76760 0.76938 1.20984 1.24183 1.22602 1.45644 1.66127 1.13843 1.08513 1.16997 0.75121 0.85066 0.82875 1.90525 1.56467 1.16829 1.86391 1.19476 1.31046 0.96297 0.93970 1.23648 0.90487 0.94695 0.93760 1.77015 1.29341 1.04078 1.05978 1.48432 1.55019 1.05659 1.10468 1.22071 1.03327 1.04611 0.74496 1.18183 0.90462 0.83774 0.89601 1.41561 1.74297 1.05222 1.16078 0.91625 0.94281 0.89776 0.90676 0.87540 0.93326 0.91394 0.95405 0.79029 0.94566 0.76314 0.80102 0.88861 0.89181 0.88139 0.73968 0.75711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.48 71.98 0.68 -3.18 16 2 C 0.15 4.79 2.58 44.99 0.12 4.90 16 3 H 0.05 2.05 7.57 -2.39 -0.02 2.03 16 4 C -0.12 -3.36 4.43 30.60 0.14 -3.23 16 5 C 0.16 5.97 2.89 44.99 0.13 6.10 16 6 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 7 C -0.15 -5.02 9.49 71.98 0.68 -4.34 16 8 N -0.72 -32.33 3.84 -322.94 -1.24 -33.57 16 9 C -0.23 -12.01 9.93 84.03 0.83 -11.18 16 10 H 0.05 2.77 7.83 -2.91 -0.02 2.75 16 11 C -0.04 -2.22 5.50 84.86 0.47 -1.75 16 12 N -0.92 -49.96 11.01 21.65 0.24 -49.72 16 13 Si 0.93 47.36 29.55 68.60 2.03 49.39 16 14 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 15 H -0.31 -16.56 7.11 99.48 0.71 -15.85 16 16 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 17 N -0.69 -25.94 3.78 -446.42 -1.69 -27.63 16 18 C 0.61 25.74 7.76 86.47 0.67 26.41 16 19 O -0.62 -27.39 14.80 -4.32 -0.06 -27.45 16 20 C -0.39 -16.27 6.15 -19.99 -0.12 -16.39 16 21 C 0.16 6.95 10.16 85.72 0.87 7.82 16 22 N -0.34 -14.20 12.47 -56.22 -0.70 -14.90 16 23 N -0.41 -13.93 4.00 -365.32 -1.46 -15.39 16 24 C 0.09 2.06 11.25 127.77 1.44 3.50 16 25 C 0.42 15.04 7.98 132.69 1.06 16.10 16 26 N -0.82 -22.84 9.02 -54.58 -0.49 -23.33 16 27 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.38 17.27 5.71 -92.71 -0.53 16.74 16 36 H 0.24 13.65 8.31 -92.70 -0.77 12.88 16 37 H 0.40 15.25 5.47 -92.71 -0.51 14.74 16 38 H 0.18 7.87 6.85 -2.91 -0.02 7.85 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.10 1.60 7.46 -2.39 -0.02 1.58 16 42 H 0.43 12.90 7.01 -92.71 -0.65 12.25 16 43 H 0.41 7.83 8.04 -92.71 -0.75 7.08 16 Total: -1.00 -68.53 351.14 2.21 -66.32 By element: Atomic # 1 Polarization: 52.91 SS G_CDS: -1.37 Total: 51.54 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 6.96 Total: 24.76 kcal Atomic # 7 Polarization: -159.20 SS G_CDS: -5.34 Total: -164.55 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -68.53 2.21 -66.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134197109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.664 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds