Wall clock time and date at job start Tue Mar 31 2020 04:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30841 * 125.96174 * 2 1 4 4 C 1.33243 * 109.82797 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.52604 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47042 * 89.99967 * 5 4 3 7 7 O 1.21279 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99935 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99771 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47391 * 34.99730 * 9 8 6 11 11 C 1.53002 * 109.46799 * 274.99826 * 9 8 6 12 12 C 1.53000 * 109.46840 * 155.00060 * 9 8 6 13 13 C 1.53005 * 109.46867 * 294.99527 * 12 9 8 14 14 H 1.08994 * 109.47042 * 55.00282 * 13 12 9 15 15 C 1.53003 * 109.46902 * 175.00512 * 13 12 9 16 16 N 1.46501 * 109.47278 * 294.99980 * 13 12 9 17 17 C 1.36940 * 119.99786 * 155.00016 * 16 13 12 18 18 H 1.07997 * 119.99662 * 359.97438 * 17 16 13 19 19 C 1.38810 * 119.99761 * 180.02562 * 17 16 13 20 20 N 1.31619 * 120.00070 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99875 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47040 * 90.00051 * 21 19 17 23 23 H 1.48503 * 109.47262 * 210.00172 * 21 19 17 24 24 H 1.48500 * 109.47367 * 330.00364 * 21 19 17 25 25 N 1.30715 * 108.94740 * 0.26704 * 4 3 2 26 26 N 1.34429 * 125.96521 * 180.02562 * 2 1 3 27 27 H 0.97003 * 126.82235 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.46956 * 89.97688 * 1 2 3 29 29 H 1.08997 * 109.46703 * 209.97708 * 1 2 3 30 30 H 1.09002 * 109.46932 * 329.97684 * 1 2 3 31 31 H 1.08999 * 109.47190 * 330.00087 * 5 4 3 32 32 H 1.08995 * 109.47434 * 210.00071 * 5 4 3 33 33 H 0.96998 * 119.99599 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47407 * 60.00500 * 11 9 8 35 35 H 1.09000 * 109.46986 * 180.02562 * 11 9 8 36 36 H 1.09002 * 109.47075 * 299.99543 * 11 9 8 37 37 H 1.08990 * 109.47170 * 54.99738 * 12 9 8 38 38 H 1.09001 * 109.46952 * 174.99815 * 12 9 8 39 39 H 1.08999 * 109.47084 * 59.99744 * 15 13 12 40 40 H 1.08994 * 109.46912 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.46911 * 299.99843 * 15 13 12 42 42 H 0.97003 * 120.00154 * 335.00823 * 16 13 12 43 43 H 0.97002 * 119.99909 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0013 6 6 5.1320 1.9355 1.4193 7 8 4.5140 1.4471 2.3415 8 7 6.1711 2.7579 1.6650 9 6 6.5551 3.0606 3.0459 10 1 6.3941 2.1808 3.6690 11 6 5.7038 4.2191 3.5697 12 6 8.0332 3.4532 3.0898 13 6 8.8918 2.2533 2.6847 14 1 8.5681 1.8874 1.7104 15 6 10.3594 2.6792 2.6078 16 7 8.7439 1.1887 3.6801 17 6 8.9673 -0.1152 3.3263 18 1 9.2522 -0.3586 2.3134 19 6 8.8267 -1.1241 4.2694 20 7 8.4780 -0.8275 5.5034 21 14 9.1308 -2.9028 3.7866 22 1 10.5608 -3.2377 4.0060 23 1 8.2808 -3.7934 4.6170 24 1 8.7926 -3.0914 2.3530 25 7 3.6195 -0.6168 -0.0067 26 7 2.2965 -1.0880 -0.0005 27 1 2.0094 -2.0146 -0.0006 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3632 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 4.4700 2.5470 -0.5151 32 1 5.5741 1.1509 -0.5154 33 1 6.6651 3.1488 0.9273 34 1 4.6508 3.9394 3.5384 35 1 5.9898 4.4446 4.5970 36 1 5.8649 5.0989 2.9466 37 1 8.2109 4.2771 2.3988 38 1 8.2967 3.7638 4.1009 39 1 10.6830 3.0452 3.5822 40 1 10.9710 1.8246 2.3188 41 1 10.4695 3.4714 1.8672 42 1 8.4875 1.4073 4.5898 43 1 8.3794 -1.5325 6.1623 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134355376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:28 Heat of formation + Delta-G solvation = 15.109846 kcal Electronic energy + Delta-G solvation = -24111.060898 eV Core-core repulsion = 20612.689600 eV Total energy + Delta-G solvation = -3498.371298 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.17613 -40.76554 -38.31244 -36.04117 -34.69555 -34.00289 -33.37033 -32.37986 -30.58497 -30.19725 -28.59872 -27.55896 -25.66604 -23.55949 -22.32626 -21.84541 -21.15159 -21.08976 -19.29310 -18.90957 -18.20351 -17.23615 -16.67678 -16.52559 -16.16150 -15.70207 -15.46082 -15.40452 -14.79481 -14.66339 -14.34069 -14.27055 -13.67076 -13.63394 -13.59266 -13.38087 -13.24045 -12.99667 -12.91629 -12.77603 -12.73787 -12.66150 -12.21927 -12.21247 -11.80200 -11.54762 -11.39188 -11.26610 -11.12710 -10.91895 -10.84648 -10.46405 -9.94655 -8.94090 -7.92655 -5.17260 0.56880 1.39728 1.42709 1.49413 1.64340 1.72226 1.76158 2.45221 2.55345 3.01217 3.42262 3.54426 3.80845 3.85986 3.99333 4.08167 4.18911 4.39695 4.40669 4.45010 4.58245 4.69514 4.71950 4.75082 4.82804 4.86387 4.97981 5.02571 5.07089 5.13374 5.23374 5.26915 5.34635 5.38825 5.46095 5.52801 5.66313 5.70895 6.19337 6.31085 6.68254 7.04709 7.36608 7.41107 8.18196 8.36722 9.31441 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.004809 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.231213 B = 5820.955651 C = 7381.288686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.283 3.717 3 N -0.564 5.564 4 C 0.237 3.763 5 C -0.044 4.044 6 C 0.516 3.484 7 O -0.587 6.587 8 N -0.700 5.700 9 C 0.147 3.853 10 H 0.040 0.960 11 C -0.150 4.150 12 C -0.116 4.116 13 C 0.162 3.838 14 H 0.046 0.954 15 C -0.156 4.156 16 N -0.732 5.732 17 C -0.223 4.223 18 H 0.071 0.929 19 C -0.079 4.079 20 N -0.970 5.970 21 Si 0.959 3.041 22 H -0.282 1.282 23 H -0.302 1.302 24 H -0.275 1.275 25 N -0.347 5.347 26 N -0.478 5.478 27 H 0.453 0.547 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.416 0.584 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.028 0.972 41 H 0.079 0.921 42 H 0.369 0.631 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 9.895 -15.815 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.006 3.994 3 N -0.294 5.294 4 C -0.047 4.047 5 C -0.086 4.086 6 C 0.302 3.698 7 O -0.467 6.467 8 N -0.352 5.352 9 C 0.043 3.957 10 H 0.059 0.941 11 C -0.208 4.208 12 C -0.155 4.155 13 C 0.054 3.946 14 H 0.064 0.936 15 C -0.216 4.216 16 N -0.373 5.373 17 C -0.355 4.355 18 H 0.089 0.911 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.790 3.210 22 H -0.209 1.209 23 H -0.229 1.229 24 H -0.200 1.200 25 N -0.176 5.176 26 N -0.198 5.198 27 H 0.301 0.699 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.174 0.826 32 H 0.152 0.848 33 H 0.254 0.746 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.098 0.902 42 H 0.200 0.800 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.492 9.385 -15.303 21.870 hybrid contribution 0.113 -1.983 0.505 2.049 sum -12.378 7.402 -14.797 20.663 Atomic orbital electron populations 1.20649 0.79757 1.06312 1.06362 1.25350 0.98436 0.81978 0.93665 1.70274 1.01320 1.31086 1.26725 1.23736 0.93671 0.89993 0.97278 1.20032 0.93810 1.00071 0.94650 1.20673 0.80210 0.77878 0.91080 1.90723 1.54840 1.53052 1.48083 1.45722 1.32164 1.48181 1.09176 1.20798 0.94860 0.97452 0.82632 0.94132 1.22066 0.98648 0.98124 1.01942 1.22073 0.91602 0.98161 1.03627 1.20557 0.93699 0.87983 0.92320 0.93622 1.22304 0.97986 1.00232 1.01036 1.42629 1.82462 1.02314 1.09854 1.19524 1.35876 0.85149 0.94954 0.91136 1.25414 1.04187 1.01453 0.96059 1.69805 1.56959 1.32112 1.03329 0.85329 0.77260 0.81299 0.77140 1.20945 1.22922 1.20020 1.77947 0.99007 1.13105 1.27587 1.47873 1.03283 1.11060 1.57621 0.69878 0.86422 0.87407 0.88293 0.82590 0.84753 0.74610 0.94778 0.91455 0.89526 0.87070 0.90790 0.94060 0.95244 0.90239 0.79971 0.94510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.51 71.24 0.75 -0.03 16 2 C 0.28 6.69 8.24 138.22 1.14 7.83 16 3 N -0.56 -17.25 11.19 -179.72 -2.01 -19.27 16 4 C 0.24 7.81 6.63 138.63 0.92 8.73 16 5 C -0.04 -1.16 6.33 29.10 0.18 -0.97 16 6 C 0.52 18.00 7.79 87.66 0.68 18.68 16 7 O -0.59 -27.90 15.70 -3.03 -0.05 -27.95 16 8 N -0.70 -19.87 4.45 -442.53 -1.97 -21.84 16 9 C 0.15 4.84 2.52 44.99 0.11 4.96 16 10 H 0.04 1.89 7.06 -2.39 -0.02 1.87 16 11 C -0.15 -4.10 9.48 71.98 0.68 -3.42 16 12 C -0.12 -3.31 4.29 30.60 0.13 -3.18 16 13 C 0.16 5.97 2.84 44.99 0.13 6.10 16 14 H 0.05 1.69 7.56 -2.39 -0.02 1.67 16 15 C -0.16 -5.09 9.49 71.98 0.68 -4.41 16 16 N -0.73 -37.29 4.49 -322.93 -1.45 -38.74 16 17 C -0.22 -12.84 9.93 84.03 0.83 -12.01 16 18 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 19 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16 20 N -0.97 -63.01 13.06 21.65 0.28 -62.73 16 21 Si 0.96 49.54 29.55 68.60 2.03 51.57 16 22 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 24 H -0.27 -13.65 7.11 99.48 0.71 -12.94 16 25 N -0.35 -12.10 12.80 -51.33 -0.66 -12.76 16 26 N -0.48 -12.15 7.45 -50.70 -0.38 -12.53 16 27 H 0.45 7.82 8.96 -213.10 -1.91 5.91 16 28 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.16 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.42 7.99 8.60 -92.71 -0.80 7.19 16 34 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.37 20.60 7.80 -92.71 -0.72 19.87 16 43 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -91.36 365.51 0.12 -91.24 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -2.39 Total: 35.07 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.71 Total: 17.93 kcal Atomic # 7 Polarization: -161.68 SS G_CDS: -6.18 Total: -167.86 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.03 Total: 51.57 kcal Total: -91.36 0.12 -91.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134355376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.352 kcal (2) G-P(sol) polarization free energy of solvation -91.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds