Wall clock time and date at job start Tue Mar 31 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33238 * 125.53176 * 2 1 4 4 C 1.30827 * 109.83074 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.96188 * 179.97438 * 4 3 2 6 6 N 1.34430 * 108.07850 * 359.97438 * 4 3 2 7 7 C 1.46506 * 126.82171 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46684 * 90.00309 * 7 6 4 9 9 C 1.53006 * 109.46623 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46866 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00040 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00033 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00165 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47368 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.47368 * 179.97438 * 14 13 12 16 16 C 1.36929 * 119.99988 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99998 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99944 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99992 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47012 * 89.99784 * 20 18 16 22 22 H 1.48491 * 109.47340 * 209.99690 * 20 18 16 23 23 H 1.48499 * 109.47078 * 330.00072 * 20 18 16 24 24 N 1.30717 * 125.52327 * 180.28438 * 2 1 3 25 25 H 1.09002 * 109.46628 * 90.02277 * 1 2 3 26 26 H 1.08993 * 109.47194 * 210.02373 * 1 2 3 27 27 H 1.08999 * 109.46540 * 330.02813 * 1 2 3 28 28 H 1.09001 * 109.46793 * 270.04031 * 5 4 3 29 29 H 1.08995 * 109.46681 * 30.03930 * 5 4 3 30 30 H 1.09002 * 109.47009 * 150.04156 * 5 4 3 31 31 H 1.09000 * 109.47212 * 330.00076 * 7 6 4 32 32 H 1.09001 * 109.46577 * 210.00001 * 7 6 4 33 33 H 1.09000 * 109.47486 * 59.99935 * 8 7 6 34 34 H 1.09001 * 109.47362 * 299.99212 * 8 7 6 35 35 H 1.08993 * 109.46955 * 300.00075 * 9 8 7 36 36 H 1.09000 * 109.47050 * 59.99904 * 9 8 7 37 37 H 0.96996 * 119.99850 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.47197 * 300.00087 * 13 12 10 39 39 H 1.09004 * 109.46923 * 59.99390 * 13 12 10 40 40 H 1.09004 * 109.47108 * 300.00044 * 14 13 12 41 41 H 1.09000 * 109.46870 * 59.99938 * 14 13 12 42 42 H 0.97003 * 119.99532 * 0.02562 * 15 14 13 43 43 H 0.96997 * 119.99631 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2814 1.0843 0.0000 4 6 3.5408 0.7302 0.0006 5 6 4.7229 1.6651 0.0002 6 7 3.5966 -0.6129 0.0015 7 6 4.8048 -1.4415 0.0018 8 6 5.2255 -1.7290 1.4445 9 6 6.4870 -2.5949 1.4448 10 6 6.9018 -2.8775 2.8658 11 8 6.2527 -2.4300 3.7874 12 7 7.9947 -3.6268 3.1124 13 6 8.3983 -3.9011 4.4937 14 6 9.6596 -4.7670 4.4942 15 7 10.0635 -5.0408 5.8755 16 6 11.1733 -5.8028 6.1260 17 1 11.7511 -6.2016 5.3053 18 6 11.5564 -6.0618 7.4349 19 7 12.6229 -6.7946 7.6757 20 14 10.5575 -5.3714 8.8544 21 1 9.5002 -6.3427 9.2341 22 1 11.4497 -5.1314 10.0169 23 1 9.9284 -4.0915 8.4406 24 7 2.2666 -1.0639 -0.0053 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3632 0.8903 0.5134 28 1 5.0077 1.8903 -1.0276 29 1 4.4559 2.5885 0.5139 30 1 5.5601 1.1924 0.5139 31 1 5.6077 -0.9135 -0.5125 32 1 4.6008 -2.3813 -0.5113 33 1 4.4226 -2.2570 1.9588 34 1 5.4295 -0.7892 1.9576 35 1 6.2827 -3.5346 0.9318 36 1 7.2901 -2.0672 0.9303 37 1 8.5139 -3.9843 2.3753 38 1 8.6024 -2.9609 5.0061 39 1 7.5955 -4.4286 5.0089 40 1 9.4550 -5.7072 3.9819 41 1 10.4624 -4.2398 3.9789 42 1 9.5444 -4.6829 6.6126 43 1 12.8903 -6.9759 8.5903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147277829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:31 Heat of formation + Delta-G solvation = 49.057240 kcal Electronic energy + Delta-G solvation = -22343.150309 eV Core-core repulsion = 18846.251081 eV Total energy + Delta-G solvation = -3496.899228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.44352 -39.83006 -36.37832 -35.77580 -34.00782 -33.47992 -32.59866 -31.47793 -29.99453 -29.02056 -28.08504 -26.31026 -23.69518 -22.50899 -21.54941 -21.03126 -20.80735 -20.32469 -17.93837 -17.41079 -16.75732 -16.35817 -16.14147 -15.72415 -15.18227 -14.77141 -14.45785 -14.22210 -14.01032 -13.80636 -13.75130 -13.70658 -13.30049 -13.14977 -12.82025 -12.68534 -12.62122 -12.46152 -12.16022 -11.94462 -11.61970 -11.56155 -11.28324 -11.00830 -10.89056 -10.28017 -10.20513 -10.06259 -9.93921 -9.66789 -9.61964 -9.11734 -8.95017 -7.35360 -5.84395 -3.22104 1.26562 1.91486 2.53973 2.57142 3.08501 3.34911 3.38547 3.42880 3.67284 3.97872 4.27427 4.28861 4.46799 4.51007 4.53506 4.75635 4.83725 4.90251 4.93659 4.95450 5.11912 5.21486 5.27882 5.30955 5.38696 5.41045 5.45313 5.55569 5.56954 5.60182 5.78287 5.89830 6.01972 6.17760 6.30305 6.48948 6.51985 6.54556 7.43560 7.82110 7.88501 8.14508 8.33583 9.11005 9.83392 10.01462 11.33322 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.034688 B = 0.001992 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.998907 B =14051.907164 C =14274.359455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.219 3.781 3 N -0.545 5.545 4 C 0.279 3.721 5 C -0.079 4.079 6 N -0.376 5.376 7 C 0.127 3.873 8 C -0.120 4.120 9 C -0.137 4.137 10 C 0.510 3.490 11 O -0.542 6.542 12 N -0.723 5.723 13 C 0.106 3.894 14 C 0.149 3.851 15 N -0.753 5.753 16 C -0.250 4.250 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.931 5.931 20 Si 0.885 3.115 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.276 1.276 24 N -0.318 5.318 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.363 0.637 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.273 15.061 -21.390 31.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 N -0.274 5.274 4 C 0.003 3.997 5 C -0.138 4.138 6 N -0.166 5.166 7 C 0.005 3.995 8 C -0.159 4.159 9 C -0.178 4.178 10 C 0.295 3.705 11 O -0.419 6.419 12 N -0.374 5.374 13 C -0.017 4.017 14 C 0.021 3.979 15 N -0.399 5.399 16 C -0.380 4.380 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.578 5.578 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.202 1.202 24 N -0.147 5.147 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.236 0.764 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.196 0.804 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.843 14.774 -20.751 31.684 hybrid contribution 0.039 0.117 0.796 0.805 sum -18.803 14.890 -19.955 31.201 Atomic orbital electron populations 1.20083 0.83935 1.04068 1.03605 1.24284 0.98275 0.85742 0.98020 1.70351 0.99883 1.31002 1.26183 1.24369 0.95320 0.83908 0.96097 1.20424 0.91381 0.97625 1.04415 1.50312 1.05915 1.05487 1.54900 1.21873 0.82611 0.96234 0.98796 1.21706 0.97789 1.01582 0.94866 1.21551 0.98876 1.02288 0.95060 1.20498 0.80403 0.78289 0.91286 1.90737 1.53402 1.51262 1.46525 1.45911 1.28690 1.53248 1.09581 1.21607 0.97937 1.00337 0.81861 1.20729 0.92452 0.96081 0.88649 1.42532 1.32727 1.63606 1.01032 1.19001 1.01584 1.23714 0.93704 0.89081 1.24679 0.97541 0.99684 0.96981 1.69699 1.26048 1.42386 1.19664 0.86544 0.79851 0.79043 0.83089 1.20892 1.21538 1.20212 1.78031 0.86733 1.22600 1.27310 0.89952 0.90008 0.89604 0.89044 0.88345 0.89727 0.88217 0.88112 0.89949 0.90362 0.88262 0.88312 0.76403 0.91365 0.91379 0.94905 0.94955 0.80383 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.22 2.48 8.14 -156.85 -1.28 1.21 16 3 N -0.55 -6.40 11.19 -8.16 -0.09 -6.49 16 4 C 0.28 2.66 7.98 -155.69 -1.24 1.42 16 5 C -0.08 -0.40 10.01 36.01 0.36 -0.04 16 6 N -0.38 -3.66 3.64 -58.33 -0.21 -3.87 16 7 C 0.13 0.77 6.13 -4.04 -0.02 0.74 16 8 C -0.12 -0.94 4.83 -26.73 -0.13 -1.07 16 9 C -0.14 -0.88 5.70 -27.88 -0.16 -1.04 16 10 C 0.51 5.99 7.83 -10.99 -0.09 5.90 16 11 O -0.54 -8.96 15.98 5.56 0.09 -8.88 16 12 N -0.72 -8.28 5.56 -60.30 -0.33 -8.61 16 13 C 0.11 1.64 5.79 -4.04 -0.02 1.61 16 14 C 0.15 2.67 6.37 -4.04 -0.03 2.64 16 15 N -0.75 -17.61 5.41 -59.91 -0.32 -17.93 16 16 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 17 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 18 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 19 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 20 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 24 N -0.32 -3.85 12.70 32.42 0.41 -3.44 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.30 7.76 -51.93 -0.40 -0.11 16 31 H 0.10 0.29 7.72 -51.93 -0.40 -0.11 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 3.33 8.47 -40.82 -0.35 2.98 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.36 8.40 5.53 -40.82 -0.23 8.17 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -38.26 365.91 -8.25 -46.51 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.88 Total: 3.70 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -2.48 Total: 4.30 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: 0.22 Total: -68.49 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.26 -8.25 -46.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147277829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.566 kcal (2) G-P(sol) polarization free energy of solvation -38.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds