Wall clock time and date at job start Tue Mar 31 2020 03:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99972 * 2 1 4 4 C 1.34774 * 120.00221 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99962 * 359.97438 * 4 2 1 6 6 C 1.50699 * 120.00439 * 180.02562 * 4 2 1 7 7 C 1.50694 * 109.47319 * 179.97438 * 6 4 2 8 8 O 1.21281 * 119.99974 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99973 * 179.97438 * 7 6 4 10 10 C 1.47892 * 134.34311 * 180.02562 * 9 7 6 11 11 C 1.52375 * 85.73257 * 156.54358 * 10 9 7 12 12 C 1.48161 * 134.44944 * 359.88843 * 9 7 6 13 13 C 1.53654 * 116.39618 * 141.28147 * 11 10 9 14 14 C 1.54605 * 102.73195 * 162.91767 * 13 11 10 15 15 N 1.47144 * 107.36262 * 339.24918 * 14 13 11 16 16 C 1.36937 * 125.58305 * 179.09493 * 15 14 13 17 17 H 1.08002 * 119.99549 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00398 * 359.97438 * 16 15 14 19 19 N 1.31627 * 119.99797 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00157 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47132 * 59.99893 * 20 18 16 22 22 H 1.48496 * 109.47128 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47063 * 300.00077 * 20 18 16 24 24 C 1.47719 * 108.82637 * 359.07314 * 15 14 13 25 25 H 1.09002 * 109.47315 * 269.99568 * 1 2 3 26 26 H 1.09003 * 109.47249 * 29.99944 * 1 2 3 27 27 H 1.09000 * 109.47154 * 150.00124 * 1 2 3 28 28 H 1.08994 * 109.47501 * 270.00261 * 3 2 1 29 29 H 1.09002 * 109.47086 * 30.00374 * 3 2 1 30 30 H 1.09003 * 109.46832 * 149.99854 * 3 2 1 31 31 H 1.09001 * 109.47047 * 59.99269 * 6 4 2 32 32 H 1.09003 * 109.46510 * 300.00025 * 6 4 2 33 33 H 1.09002 * 113.85436 * 42.31390 * 10 9 7 34 34 H 1.08998 * 113.84884 * 270.77567 * 10 9 7 35 35 H 1.08997 * 113.74300 * 89.28005 * 12 9 7 36 36 H 1.09006 * 114.04347 * 317.66282 * 12 9 7 37 37 H 1.08994 * 110.76150 * 281.23220 * 13 11 10 38 38 H 1.09004 * 110.75900 * 44.61270 * 13 11 10 39 39 H 1.08996 * 109.86482 * 98.69071 * 14 13 11 40 40 H 1.08997 * 109.86858 * 219.66814 * 14 13 11 41 41 H 0.96999 * 119.99806 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.40181 * 263.66202 * 24 15 14 43 43 H 1.09001 * 110.40025 * 141.25086 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 0.0001 7 6 4.1482 -2.5880 -0.0001 8 8 3.3601 -3.5098 -0.0010 9 7 5.4733 -2.8342 -0.0001 10 6 6.2963 -4.0630 -0.0007 11 6 7.3914 -3.1927 -0.6051 12 6 6.6866 -1.9840 -0.0022 13 6 8.8239 -3.4612 -0.1184 14 6 9.6863 -2.7721 -1.2007 15 7 8.8512 -2.6319 -2.4041 16 6 9.2419 -2.0534 -3.5822 17 1 8.5524 -1.9988 -4.4117 18 6 10.5240 -1.5371 -3.7103 19 7 11.3641 -1.6032 -2.6992 20 14 11.0571 -0.7486 -5.3176 21 1 10.1736 0.4062 -5.6194 22 1 12.4607 -0.2790 -5.1970 23 1 10.9606 -1.7455 -6.4140 24 6 7.5226 -3.2180 -2.1332 25 1 -0.3634 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.3791 1.5835 -1.0276 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5139 31 1 4.0089 -0.6539 0.8905 32 1 4.0095 -0.6528 -0.8895 33 1 5.9292 -4.8391 -0.6722 34 1 6.5303 -4.4372 0.9959 35 1 7.0392 -1.7200 0.9949 36 1 6.6278 -1.1277 -0.6742 37 1 8.9921 -3.0058 0.8575 38 1 9.0268 -4.5317 -0.0865 39 1 10.0018 -1.7887 -0.8523 40 1 10.5603 -3.3842 -1.4232 41 1 12.2600 -1.2421 -2.7886 42 1 7.4771 -4.2429 -2.5015 43 1 6.7400 -2.6135 -2.5918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148402329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:12 Heat of formation + Delta-G solvation = 9.456117 kcal Electronic energy + Delta-G solvation = -24221.502713 eV Core-core repulsion = 20690.593500 eV Total energy + Delta-G solvation = -3530.909213 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65816 -39.83484 -37.86389 -35.70982 -35.38978 -32.29995 -31.33905 -29.55569 -28.47205 -27.75442 -26.26540 -26.04361 -25.40922 -23.53809 -20.38526 -20.04708 -18.84000 -18.21850 -17.53827 -16.89457 -16.39160 -16.35232 -15.87624 -15.34325 -15.25732 -14.69087 -14.22101 -14.14225 -13.77083 -13.36725 -13.10252 -12.93780 -12.89045 -12.80460 -12.44397 -12.29055 -12.23290 -11.91786 -11.83608 -11.79879 -11.09524 -10.94920 -10.77019 -10.40141 -10.24504 -10.14264 -9.92416 -9.86023 -9.68600 -9.20759 -8.89334 -8.62505 -8.45662 -6.86884 -5.74448 -3.07935 2.52495 2.56585 2.84961 3.12667 3.38242 3.43199 3.43942 4.28490 4.38576 4.48193 4.70848 4.74096 4.94523 4.99858 5.03815 5.09834 5.15143 5.22755 5.35527 5.35753 5.47106 5.52982 5.58112 5.67010 5.73905 5.74911 5.83894 5.96703 6.16553 6.21670 6.22228 6.45712 6.51799 6.66484 6.71896 7.09279 7.52497 7.58206 7.79347 7.88294 8.06953 8.22183 8.39742 9.19056 9.78707 10.44487 11.37037 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.003571 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.887583 B = 7839.093269 C = 8773.694948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.630 5.630 3 C 0.076 3.924 4 C 0.513 3.487 5 O -0.492 6.492 6 C -0.158 4.158 7 C 0.534 3.466 8 O -0.507 6.507 9 N -0.645 5.645 10 C 0.125 3.875 11 C -0.104 4.104 12 C 0.120 3.880 13 C -0.131 4.131 14 C 0.179 3.821 15 N -0.605 5.605 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.162 3.838 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.253 0.747 42 H 0.025 0.975 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 5.989 9.022 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.368 5.368 3 C -0.067 4.067 4 C 0.299 3.701 5 O -0.364 6.364 6 C -0.201 4.201 7 C 0.321 3.679 8 O -0.381 6.381 9 N -0.383 5.383 10 C 0.002 3.998 11 C -0.106 4.106 12 C -0.002 4.002 13 C -0.170 4.170 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.357 4.357 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.036 3.964 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.577 5.046 8.925 17.821 hybrid contribution 0.496 0.784 -0.790 1.218 sum -14.081 5.829 8.135 17.275 Atomic orbital electron populations 1.21593 0.79119 1.03085 1.01691 1.47785 1.07087 1.06264 1.75616 1.21843 0.97367 0.85307 1.02200 1.20093 0.89339 0.83464 0.77192 1.90850 1.69366 1.30100 1.46100 1.21556 0.94259 0.97834 1.06438 1.19541 0.80710 0.90338 0.77318 1.90835 1.53437 1.45636 1.48152 1.50301 1.03333 1.10981 1.73646 1.22951 0.86820 0.89465 1.00539 1.22447 0.94600 0.94844 0.98710 1.23095 0.80680 0.95868 1.00543 1.22675 0.93611 1.00927 0.99824 1.21200 0.91443 0.98346 0.83590 1.44559 1.08203 1.68693 1.11718 1.19002 0.96712 1.30497 0.89479 0.90562 1.24780 0.96391 1.01313 0.97832 1.69949 1.06429 1.50905 1.29690 0.86209 0.77534 0.79162 0.82900 1.21210 1.21607 1.21185 1.21034 0.89359 0.96659 0.89350 0.92908 0.91324 0.90517 0.92260 0.90937 0.90790 0.86394 0.86118 0.90131 0.89913 0.89746 0.89546 0.91741 0.91725 0.93486 0.93879 0.93708 0.95749 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.44 59.85 0.62 1.37 16 2 N -0.63 -6.24 3.27 -189.52 -0.62 -6.86 16 3 C 0.08 0.45 10.24 59.85 0.61 1.06 16 4 C 0.51 7.01 7.67 -10.99 -0.08 6.92 16 5 O -0.49 -9.20 13.76 -18.96 -0.26 -9.46 16 6 C -0.16 -1.83 4.49 -29.04 -0.13 -1.96 16 7 C 0.53 8.55 8.05 -10.99 -0.09 8.46 16 8 O -0.51 -10.49 14.90 -18.96 -0.28 -10.77 16 9 N -0.65 -9.47 3.63 -185.47 -0.67 -10.14 16 10 C 0.12 1.79 8.20 -3.60 -0.03 1.76 16 11 C -0.10 -1.65 0.99 -154.82 -0.15 -1.80 16 12 C 0.12 1.62 7.93 -3.46 -0.03 1.59 16 13 C -0.13 -2.17 6.36 -25.55 -0.16 -2.33 16 14 C 0.18 4.03 5.39 -2.85 -0.02 4.01 16 15 N -0.61 -14.64 3.41 -170.50 -0.58 -15.22 16 16 C -0.23 -6.15 10.28 -15.06 -0.15 -6.31 16 17 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -26.08 10.30 55.49 0.57 -25.51 16 20 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.16 3.20 6.63 -3.17 -0.02 3.18 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 27 H 0.08 0.80 7.42 -51.93 -0.39 0.41 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 30 H 0.07 0.36 6.44 -51.93 -0.33 0.02 16 31 H 0.12 0.99 7.40 -51.93 -0.38 0.60 16 32 H 0.12 1.16 8.11 -51.93 -0.42 0.74 16 33 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 36 H 0.09 1.18 8.12 -51.93 -0.42 0.76 16 37 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 40 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -35.85 349.89 -8.21 -44.06 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.89 Total: -3.53 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 0.28 Total: 15.68 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -1.30 Total: -57.74 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.54 Total: -20.24 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.85 -8.21 -44.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148402329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.519 kcal (2) G-P(sol) polarization free energy of solvation -35.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds