Wall clock time and date at job start Tue Mar 31 2020 04:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00579 * 180.02562 * 11 9 8 13 13 Si 1.86811 * 119.99633 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46906 * 90.00102 * 13 11 9 15 15 H 1.48495 * 109.47152 * 210.00270 * 13 11 9 16 16 H 1.48502 * 109.47012 * 330.00516 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21555 * 119.99896 * 359.97438 * 18 17 2 20 20 C 1.47802 * 119.99837 * 179.97438 * 18 17 2 21 21 C 1.40923 * 127.23335 * 179.97438 * 20 18 17 22 22 N 1.31130 * 105.77532 * 180.02562 * 21 20 18 23 23 N 1.28523 * 109.05882 * 0.02562 * 22 21 20 24 24 C 1.46498 * 124.44319 * 179.97438 * 23 22 21 25 25 N 1.28580 * 111.11174 * 359.72444 * 23 22 21 26 26 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 27 27 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 29 29 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 30 30 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 31 31 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 32 32 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 33 33 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 34 34 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 35 35 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 36 36 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 37 37 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 38 38 H 0.97000 * 120.00140 * 180.02562 * 12 11 9 39 39 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 40 40 H 1.07999 * 127.11107 * 0.02924 * 21 20 18 41 41 H 1.09005 * 109.47150 * 90.02028 * 24 23 22 42 42 H 1.09001 * 109.47195 * 210.02773 * 24 23 22 43 43 H 1.09003 * 109.47064 * 330.02981 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 9.1827 -2.6396 5.4875 13 14 6.6846 -3.4355 6.3859 14 1 6.4791 -4.8433 5.9607 15 1 7.2265 -3.4099 7.7682 16 1 5.3877 -2.7130 6.3492 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8574 1.1612 -2.4118 20 6 2.6402 -0.7146 -3.5639 21 6 2.8318 -0.1650 -4.8473 22 7 3.2782 -1.1471 -5.5927 23 7 3.3658 -2.2109 -4.8769 24 6 3.8285 -3.5088 -5.3747 25 7 2.9990 -1.9854 -3.6654 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 1.7518 -1.7716 1.2054 30 1 1.6055 -0.2619 2.1369 31 1 3.8533 0.4369 1.3573 32 1 3.9995 -1.0727 0.4257 33 1 3.6403 -0.8743 3.4506 34 1 3.7866 -2.3844 2.5197 35 1 6.0347 -1.6851 1.7403 36 1 5.8876 -0.1752 2.6713 37 1 5.4606 -2.3463 4.4258 38 1 9.5060 -3.0969 6.2794 39 1 2.2490 -1.6317 -1.1527 40 1 2.6488 0.8544 -5.1536 41 1 4.9085 -3.5827 -5.2472 42 1 3.3410 -4.3072 -4.8153 43 1 3.5803 -3.6019 -6.4320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175696892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:47 Heat of formation + Delta-G solvation = 70.140285 kcal Electronic energy + Delta-G solvation = -22925.868836 eV Core-core repulsion = 19429.883837 eV Total energy + Delta-G solvation = -3495.984999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -44.00105 -39.92955 -37.06539 -35.43288 -34.21075 -33.47627 -32.94624 -31.50873 -30.56277 -28.37381 -27.75993 -24.88273 -24.01675 -22.46911 -21.93178 -21.05256 -20.87733 -20.61736 -18.16232 -17.48374 -17.36631 -17.28268 -16.44899 -15.21691 -15.20560 -15.01668 -14.62538 -14.41604 -14.11488 -13.59419 -13.58599 -13.39263 -13.24722 -13.04047 -12.71074 -12.50252 -12.22629 -11.90909 -11.66682 -11.45349 -11.39286 -11.17185 -10.86757 -10.83973 -10.80739 -10.45485 -10.37115 -10.30861 -10.08603 -9.81905 -9.57036 -9.29159 -8.86952 -7.20122 -5.74783 -3.09902 0.97059 1.61103 1.77616 2.83839 3.00487 3.38398 3.41127 3.45946 3.56474 4.36999 4.50845 4.53316 4.60083 4.60899 4.76881 4.81147 4.85893 4.93431 5.20420 5.30885 5.32035 5.36187 5.50391 5.56396 5.58533 5.61457 5.67467 5.82423 5.88449 6.04037 6.09035 6.11611 6.15047 6.20667 6.31592 6.39027 6.80350 6.84076 7.20165 7.74054 7.91433 8.02458 8.44643 9.24248 9.96721 10.17187 11.43883 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.002783 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.591693 B =10059.458732 C =11250.484322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.129 4.129 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.936 5.936 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.706 5.706 18 C 0.612 3.388 19 O -0.528 6.528 20 C -0.048 4.048 21 C 0.035 3.965 22 N -0.291 5.291 23 N -0.142 5.142 24 C 0.102 3.898 25 N -0.248 5.248 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.407 0.593 40 H 0.209 0.791 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.292 0.493 -21.647 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.584 5.584 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.358 5.358 18 C 0.395 3.605 19 O -0.403 6.403 20 C -0.211 4.211 21 C -0.148 4.148 22 N -0.131 5.131 23 N -0.045 5.045 24 C -0.037 4.037 25 N -0.097 5.097 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.243 0.757 40 H 0.225 0.775 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.816 0.178 -22.149 29.063 hybrid contribution -0.776 -0.402 1.178 1.467 sum -19.592 -0.224 -20.971 28.700 Atomic orbital electron populations 1.22185 0.95128 1.02209 1.02671 1.21126 0.93923 0.97836 0.83456 0.88920 1.21942 0.96856 1.01011 0.96683 1.21526 0.93996 1.01293 0.98556 1.21774 0.97256 1.00292 0.97385 1.20629 0.90815 0.95703 0.89947 1.42741 1.05234 1.66379 1.26019 1.19093 0.82289 1.29208 1.06731 0.89301 1.24688 0.95637 1.00798 0.98256 1.69707 1.11738 1.48352 1.28637 0.86511 0.80964 0.79776 0.81082 1.21111 1.21726 1.20319 1.45957 1.66240 1.14511 1.09092 1.16600 0.77280 0.85508 0.81148 1.90817 1.50478 1.14635 1.84332 1.23090 1.09615 0.90802 0.97577 1.24861 1.00337 1.00252 0.89368 1.74039 1.19440 0.94194 1.25422 1.48060 1.43236 1.10249 1.02949 1.22300 1.02061 0.77414 1.01940 1.74373 1.13678 1.17719 1.03910 0.92105 0.92436 0.91311 0.91280 0.90026 0.91700 0.91905 0.92075 0.92172 0.95780 0.95727 0.80738 0.93090 0.75743 0.77482 0.88562 0.87462 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.14 1.32 2.57 -67.93 -0.17 1.14 16 3 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 4 C -0.13 -1.16 4.75 -26.73 -0.13 -1.29 16 5 C -0.12 -1.36 5.10 -26.73 -0.14 -1.50 16 6 C -0.13 -1.92 5.33 -26.73 -0.14 -2.06 16 7 C 0.16 3.10 6.26 -4.05 -0.03 3.08 16 8 N -0.76 -18.69 5.41 -59.91 -0.32 -19.01 16 9 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 10 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 11 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 12 N -0.94 -29.98 13.97 55.49 0.78 -29.20 16 13 Si 0.89 22.43 27.74 -169.99 -4.71 17.72 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 17 N -0.71 -6.93 4.53 -54.76 -0.25 -7.18 16 18 C 0.61 7.15 7.79 -12.35 -0.10 7.05 16 19 O -0.53 -7.47 16.61 5.32 0.09 -7.38 16 20 C -0.05 -0.53 7.21 -82.68 -0.60 -1.12 16 21 C 0.04 0.35 12.04 -16.84 -0.20 0.15 16 22 N -0.29 -2.91 12.01 30.90 0.37 -2.54 16 23 N -0.14 -1.26 4.34 -16.63 -0.07 -1.33 16 24 C 0.10 0.39 11.55 59.85 0.69 1.09 16 25 N -0.25 -2.55 11.84 33.42 0.40 -2.15 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.36 8.56 5.53 -40.82 -0.23 8.34 16 38 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 39 H 0.41 3.57 8.37 -40.82 -0.34 3.23 16 40 H 0.21 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -36.35 364.75 -5.82 -42.17 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.87 Total: 5.21 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.71 Total: -1.80 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.90 Total: -61.42 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.38 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.35 -5.82 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175696892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.307 kcal (2) G-P(sol) polarization free energy of solvation -36.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds