Wall clock time and date at job start Tue Mar 31 2020 04:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00579 * 180.02562 * 11 9 8 13 13 Si 1.86811 * 119.99633 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46906 * 90.00102 * 13 11 9 15 15 H 1.48495 * 109.47152 * 210.00270 * 13 11 9 16 16 H 1.48502 * 109.47012 * 330.00516 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21555 * 119.99896 * 359.97438 * 18 17 2 20 20 C 1.47802 * 119.99837 * 179.97438 * 18 17 2 21 21 C 1.40923 * 127.23335 * 179.97438 * 20 18 17 22 22 N 1.31130 * 105.77532 * 180.02562 * 21 20 18 23 23 N 1.28523 * 109.05882 * 0.02562 * 22 21 20 24 24 C 1.46498 * 124.44319 * 179.97438 * 23 22 21 25 25 N 1.28580 * 111.11174 * 359.72444 * 23 22 21 26 26 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 27 27 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 29 29 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 30 30 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 31 31 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 32 32 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 33 33 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 34 34 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 35 35 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 36 36 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 37 37 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 38 38 H 0.97000 * 120.00140 * 180.02562 * 12 11 9 39 39 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 40 40 H 1.07999 * 127.11107 * 0.02924 * 21 20 18 41 41 H 1.09005 * 109.47150 * 90.02028 * 24 23 22 42 42 H 1.09001 * 109.47195 * 210.02773 * 24 23 22 43 43 H 1.09003 * 109.47064 * 330.02981 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 9.1827 -2.6396 5.4875 13 14 6.6846 -3.4355 6.3859 14 1 6.4791 -4.8433 5.9607 15 1 7.2265 -3.4099 7.7682 16 1 5.3877 -2.7130 6.3492 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8574 1.1612 -2.4118 20 6 2.6402 -0.7146 -3.5639 21 6 2.8318 -0.1650 -4.8473 22 7 3.2782 -1.1471 -5.5927 23 7 3.3658 -2.2109 -4.8769 24 6 3.8285 -3.5088 -5.3747 25 7 2.9990 -1.9854 -3.6654 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 1.7518 -1.7716 1.2054 30 1 1.6055 -0.2619 2.1369 31 1 3.8533 0.4369 1.3573 32 1 3.9995 -1.0727 0.4257 33 1 3.6403 -0.8743 3.4506 34 1 3.7866 -2.3844 2.5197 35 1 6.0347 -1.6851 1.7403 36 1 5.8876 -0.1752 2.6713 37 1 5.4606 -2.3463 4.4258 38 1 9.5060 -3.0969 6.2794 39 1 2.2490 -1.6317 -1.1527 40 1 2.6488 0.8544 -5.1536 41 1 4.9085 -3.5827 -5.2472 42 1 3.3410 -4.3072 -4.8153 43 1 3.5803 -3.6019 -6.4320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175696892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:40 Heat of formation + Delta-G solvation = 42.907855 kcal Electronic energy + Delta-G solvation = -22927.049723 eV Core-core repulsion = 19429.883837 eV Total energy + Delta-G solvation = -3497.165886 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.71880 -40.79443 -38.10481 -36.95978 -34.91069 -34.74799 -33.91995 -33.10525 -31.75755 -29.08906 -28.87967 -25.94412 -25.29762 -23.48068 -23.13242 -22.23551 -21.92070 -21.44908 -19.63602 -18.88790 -18.04576 -18.01277 -17.26388 -16.64264 -16.30338 -15.98044 -15.87537 -15.74928 -15.21968 -14.88797 -14.67903 -14.32245 -14.16023 -13.88096 -13.66775 -13.53738 -13.18761 -12.96443 -12.95856 -12.91744 -12.45050 -12.31820 -12.15231 -12.05855 -11.89262 -11.78629 -11.57104 -11.53553 -11.43882 -11.28461 -10.98182 -10.53197 -10.10117 -9.32421 -8.04971 -5.39497 0.18723 0.85762 1.24501 1.37419 1.42269 1.50009 2.07069 2.15221 2.47851 2.86842 3.26021 3.48347 3.73209 3.90205 3.99759 4.04419 4.08844 4.28260 4.29927 4.34933 4.39543 4.48302 4.58210 4.64650 4.66258 4.76831 4.87745 4.90403 4.93269 4.98743 5.02219 5.11038 5.25694 5.34585 5.40754 5.50331 5.50495 5.55316 5.72559 6.19398 6.39847 6.99312 7.06006 7.09534 7.81893 8.02894 9.16826 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.002783 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.591693 B =10059.458732 C =11250.484322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.076 0.924 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.116 4.116 7 C 0.150 3.850 8 N -0.760 5.760 9 C -0.243 4.243 10 H 0.050 0.950 11 C -0.067 4.067 12 N -0.986 5.986 13 Si 0.963 3.037 14 H -0.274 1.274 15 H -0.294 1.294 16 H -0.248 1.248 17 N -0.698 5.698 18 C 0.610 3.390 19 O -0.560 6.560 20 C -0.068 4.068 21 C 0.027 3.973 22 N -0.301 5.301 23 N -0.136 5.136 24 C 0.088 3.912 25 N -0.252 5.252 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.018 0.982 36 H 0.016 0.984 37 H 0.368 0.632 38 H 0.259 0.741 39 H 0.413 0.587 40 H 0.222 0.778 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.831 -0.873 -21.455 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.154 4.154 5 C -0.148 4.148 6 C -0.153 4.153 7 C 0.024 3.976 8 N -0.406 5.406 9 C -0.374 4.374 10 H 0.068 0.932 11 C -0.259 4.259 12 N -0.636 5.636 13 Si 0.789 3.211 14 H -0.200 1.200 15 H -0.221 1.221 16 H -0.173 1.173 17 N -0.349 5.349 18 C 0.394 3.606 19 O -0.437 6.437 20 C -0.230 4.230 21 C -0.156 4.156 22 N -0.141 5.141 23 N -0.041 5.041 24 C -0.050 4.050 25 N -0.102 5.102 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.201 0.799 38 H 0.068 0.932 39 H 0.250 0.750 40 H 0.239 0.761 41 H 0.126 0.874 42 H 0.143 0.857 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.394 -1.192 -21.983 30.698 hybrid contribution 0.128 0.014 0.997 1.005 sum -21.266 -1.179 -20.985 29.900 Atomic orbital electron populations 1.22128 0.93912 1.02916 1.02619 1.21138 0.94798 0.97000 0.83326 0.90577 1.21857 0.94488 1.02099 0.96918 1.21449 0.96029 1.00375 0.96900 1.21660 0.93047 1.01525 0.99103 1.20843 0.94548 0.94401 0.87836 1.42745 1.03480 1.66830 1.27564 1.19065 0.84033 1.28272 1.06027 0.93173 1.25630 0.97773 1.02032 1.00432 1.69904 1.14357 1.49833 1.29531 0.85291 0.79218 0.78893 0.77670 1.20034 1.22093 1.17255 1.45952 1.65489 1.14722 1.08770 1.16724 0.76920 0.85190 0.81739 1.90791 1.52103 1.15933 1.84905 1.23048 1.10892 0.91323 0.97722 1.25175 1.00146 1.01069 0.89172 1.74034 1.19808 0.94605 1.25682 1.48616 1.41849 1.11164 1.02442 1.22789 1.02977 0.75833 1.03377 1.74327 1.13846 1.17377 1.04695 0.93651 0.91298 0.89899 0.89708 0.88631 0.92396 0.92269 0.91331 0.91069 0.96437 0.96635 0.79865 0.93202 0.75000 0.76114 0.87379 0.85744 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.48 71.98 0.68 -1.60 16 2 C 0.14 2.41 2.57 44.99 0.12 2.53 16 3 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 4 C -0.12 -1.77 4.75 30.59 0.15 -1.63 16 5 C -0.11 -2.35 5.10 30.60 0.16 -2.20 16 6 C -0.12 -3.13 5.33 30.60 0.16 -2.97 16 7 C 0.15 5.83 6.26 86.38 0.54 6.37 16 8 N -0.76 -36.62 5.41 -343.46 -1.86 -38.48 16 9 C -0.24 -14.42 10.47 84.03 0.88 -13.54 16 10 H 0.05 3.28 8.06 -2.90 -0.02 3.26 16 11 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 12 N -0.99 -64.43 13.97 21.65 0.30 -64.13 16 13 Si 0.96 45.59 27.74 68.60 1.90 47.49 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 15 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 16 H -0.25 -10.46 6.52 99.48 0.65 -9.82 16 17 N -0.70 -12.95 4.53 -445.45 -2.02 -14.96 16 18 C 0.61 14.19 7.79 86.77 0.68 14.86 16 19 O -0.56 -16.09 16.61 -3.89 -0.06 -16.15 16 20 C -0.07 -1.48 7.21 42.24 0.30 -1.18 16 21 C 0.03 0.54 12.04 85.46 1.03 1.57 16 22 N -0.30 -5.77 12.01 -56.17 -0.67 -6.45 16 23 N -0.14 -2.25 4.34 -206.54 -0.90 -3.15 16 24 C 0.09 0.51 11.55 127.77 1.48 1.98 16 25 N -0.25 -4.95 11.84 -48.17 -0.57 -5.52 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.32 7.75 -2.39 -0.02 1.30 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.37 16.47 5.53 -92.70 -0.51 15.95 16 38 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 39 H 0.41 6.59 8.37 -92.71 -0.78 5.81 16 40 H 0.22 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.13 0.23 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -79.68 364.75 2.43 -77.25 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.33 Total: 23.50 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 6.64 Total: 0.60 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -5.71 Total: -132.69 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.06 Total: -16.15 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -79.68 2.43 -77.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175696892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.154 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds