Wall clock time and date at job start Tue Mar 31 2020 03:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 120.00259 * 2 1 4 4 C 1.50701 * 109.47255 * 270.00016 * 3 2 1 5 5 O 1.21283 * 119.99681 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99985 * 179.97438 * 4 3 2 7 7 C 1.47020 * 125.65115 * 0.02562 * 6 4 3 8 8 C 1.54324 * 107.27159 * 181.02103 * 7 6 4 9 9 C 1.55158 * 102.94284 * 22.19222 * 8 7 6 10 10 H 1.09002 * 111.00032 * 82.57216 * 9 8 7 11 11 N 1.46498 * 111.00176 * 206.41888 * 9 8 7 12 12 C 1.36930 * 120.00355 * 273.54254 * 11 9 8 13 13 H 1.07996 * 120.00082 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00123 * 180.02562 * 12 11 9 15 15 N 1.31618 * 120.00181 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00352 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46969 * 59.99847 * 16 14 12 18 18 H 1.48492 * 109.47150 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46980 * 300.00172 * 16 14 12 20 20 C 1.47432 * 125.64642 * 179.71292 * 6 4 3 21 21 C 1.34783 * 119.99603 * 180.02562 * 2 1 3 22 22 O 1.21280 * 119.99508 * 180.02562 * 21 2 1 23 23 C 1.50702 * 120.00171 * 359.97438 * 21 2 1 24 24 C 1.53000 * 117.49604 * 180.02562 * 23 21 2 25 25 C 1.52997 * 117.49669 * 248.62535 * 23 21 2 26 26 H 1.08998 * 109.47105 * 270.00451 * 1 2 3 27 27 H 1.09004 * 109.46734 * 29.99880 * 1 2 3 28 28 H 1.09000 * 109.47107 * 149.99827 * 1 2 3 29 29 H 1.09004 * 109.47095 * 30.00134 * 3 2 1 30 30 H 1.08998 * 109.47410 * 150.00106 * 3 2 1 31 31 H 1.09007 * 109.87845 * 300.43794 * 7 6 4 32 32 H 1.08993 * 109.88161 * 61.60313 * 7 6 4 33 33 H 1.09006 * 110.72006 * 140.55263 * 8 7 6 34 34 H 1.08994 * 110.72370 * 263.82994 * 8 7 6 35 35 H 0.97001 * 119.99789 * 93.55353 * 11 9 8 36 36 H 0.97004 * 120.00560 * 179.97438 * 15 14 12 37 37 H 1.08996 * 110.36819 * 274.75005 * 20 6 4 38 38 H 1.09000 * 110.36513 * 37.07593 * 20 6 4 39 39 H 1.09002 * 115.56044 * 34.30916 * 23 21 2 40 40 H 1.08990 * 117.49990 * 359.97438 * 24 23 21 41 41 H 1.09004 * 117.49237 * 214.97804 * 24 23 21 42 42 H 1.08999 * 117.49685 * 145.02383 * 25 23 21 43 43 H 1.08997 * 117.50044 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 8 2.0543 1.0214 -2.3426 6 7 3.1109 2.8514 -1.6670 7 6 3.6413 3.7701 -0.6491 8 6 4.2934 4.9533 -1.3949 9 6 3.5971 4.9167 -2.7809 10 1 2.6302 5.4186 -2.7458 11 7 4.4536 5.5034 -3.8145 12 6 4.4309 6.8543 -4.0369 13 1 3.7819 7.4874 -3.4502 14 6 5.2422 7.4102 -5.0166 15 7 6.0329 6.6387 -5.7321 16 14 5.2118 9.2532 -5.3197 17 1 5.6087 9.9655 -4.0786 18 1 6.1621 9.5914 -6.4094 19 1 3.8407 9.6679 -5.7114 20 6 3.4290 3.3905 -3.0019 21 6 2.1389 -1.1673 -0.0005 22 8 3.3517 -1.1673 -0.0001 23 6 1.3853 -2.4724 -0.0005 24 6 2.2074 -3.7628 -0.0005 25 6 1.4610 -3.3317 1.2630 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5138 31 1 2.8298 4.1318 -0.0175 32 1 4.3874 3.2587 -0.0410 33 1 4.0853 5.8933 -0.8835 34 1 5.3673 4.7990 -1.4987 35 1 5.0368 4.9349 -4.3414 36 1 6.5995 7.0270 -6.4170 37 1 4.3553 2.9547 -3.3762 38 1 2.6102 3.1958 -3.6946 39 1 0.4465 -2.4734 -0.5544 40 1 3.2932 -3.6677 -0.0010 41 1 1.8096 -4.6129 -0.5548 42 1 0.5720 -3.8982 1.5403 43 1 2.0561 -2.9534 2.0942 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182998830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:25 Heat of formation + Delta-G solvation = -15.860428 kcal Electronic energy + Delta-G solvation = -23698.703697 eV Core-core repulsion = 20166.696676 eV Total energy + Delta-G solvation = -3532.007021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57835 -39.47956 -37.41831 -36.39013 -35.49705 -34.15133 -31.64747 -29.77810 -29.38032 -27.50930 -26.76615 -24.33034 -23.33565 -22.75080 -22.60872 -20.13246 -19.60594 -18.85883 -17.80227 -17.35515 -17.21373 -16.42415 -15.97299 -15.58598 -15.01157 -14.84465 -14.53702 -14.01669 -13.90465 -13.54596 -13.24475 -13.21164 -12.94563 -12.79439 -12.51941 -12.41460 -12.20004 -11.85159 -11.83848 -11.61996 -11.17092 -10.90964 -10.85465 -10.79554 -10.70716 -10.33922 -10.09919 -10.05741 -9.97400 -9.76690 -8.97208 -8.85400 -8.42610 -7.06414 -5.83165 -3.14167 2.23079 2.60876 2.72809 3.23661 3.40456 3.45145 3.46347 3.57706 4.19457 4.44650 4.53407 4.56368 4.58297 4.70190 4.86695 4.93211 5.02905 5.13677 5.22362 5.24945 5.29446 5.34425 5.39733 5.50536 5.54289 5.58955 5.64100 5.74150 5.83315 5.95033 6.07821 6.12983 6.23171 6.37327 6.53795 6.59219 6.90131 7.07862 7.63201 7.69303 7.96545 8.28354 8.34159 9.45443 9.99625 10.34476 11.38932 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.041854 B = 0.002625 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.838033 B =10662.258011 C =10816.696850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.597 5.597 3 C 0.102 3.898 4 C 0.510 3.490 5 O -0.538 6.538 6 N -0.612 5.612 7 C 0.099 3.901 8 C -0.155 4.155 9 C 0.173 3.827 10 H 0.063 0.937 11 N -0.715 5.715 12 C -0.245 4.245 13 H 0.072 0.928 14 C -0.010 4.010 15 N -0.930 5.930 16 Si 0.910 3.090 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C 0.100 3.900 21 C 0.550 3.450 22 O -0.536 6.536 23 C -0.193 4.193 24 C -0.148 4.148 25 C -0.152 4.152 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 -15.762 17.078 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C -0.025 4.025 4 C 0.296 3.704 5 O -0.415 6.415 6 N -0.347 5.347 7 C -0.025 4.025 8 C -0.196 4.196 9 C 0.061 3.939 10 H 0.081 0.919 11 N -0.356 5.356 12 C -0.376 4.376 13 H 0.090 0.910 14 C -0.207 4.207 15 N -0.577 5.577 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 C -0.023 4.023 21 C 0.338 3.662 22 O -0.412 6.412 23 C -0.214 4.214 24 C -0.186 4.186 25 C -0.189 4.189 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.057 -16.002 16.559 25.993 hybrid contribution 0.160 1.058 -0.437 1.155 sum -11.897 -14.944 16.123 24.996 Atomic orbital electron populations 1.21835 0.78657 1.03858 1.01613 1.47301 1.07247 1.04790 1.73622 1.21280 1.00077 0.86433 0.94690 1.20712 0.77948 0.79845 0.91865 1.90692 1.51557 1.53046 1.46224 1.48470 1.55411 1.21666 1.09168 1.22152 0.97707 0.91379 0.91244 1.23418 1.01298 0.95803 0.99088 1.21332 0.94381 0.89698 0.88529 0.91900 1.42256 1.47650 1.05751 1.39913 1.19150 1.19796 0.83484 1.15203 0.91029 1.24783 0.99176 0.98019 0.98681 1.69654 1.28691 1.34186 1.25210 0.86236 0.77262 0.85010 0.77452 1.21171 1.21648 1.21176 1.22572 1.01059 0.95056 0.83619 1.19658 0.87250 0.84323 0.74937 1.90701 1.13921 1.87138 1.49489 1.22204 1.02861 0.90621 1.05672 1.22963 1.00217 0.95296 1.00076 1.22926 1.03196 1.01448 0.91364 0.92216 0.90881 0.90637 0.87450 0.86954 0.91794 0.91862 0.90644 0.90469 0.77909 0.93268 0.91340 0.90649 0.85573 0.87376 0.87838 0.87761 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.27 59.85 0.61 1.24 16 2 N -0.60 -6.81 2.36 -182.95 -0.43 -7.24 16 3 C 0.10 1.18 5.08 -5.20 -0.03 1.16 16 4 C 0.51 8.10 7.92 -10.99 -0.09 8.02 16 5 O -0.54 -10.60 16.68 5.56 0.09 -10.50 16 6 N -0.61 -9.60 3.32 -170.38 -0.57 -10.17 16 7 C 0.10 1.27 6.48 -3.07 -0.02 1.25 16 8 C -0.15 -2.49 6.64 -24.90 -0.17 -2.65 16 9 C 0.17 3.32 3.70 -65.66 -0.24 3.08 16 10 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 11 N -0.72 -17.48 5.28 -51.24 -0.27 -17.75 16 12 C -0.25 -6.60 9.98 -15.06 -0.15 -6.76 16 13 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 14 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 15 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 16 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.10 1.82 6.53 -2.41 -0.02 1.81 16 21 C 0.55 7.21 7.46 -10.98 -0.08 7.12 16 22 O -0.54 -9.10 15.84 5.56 0.09 -9.01 16 23 C -0.19 -1.79 5.29 -91.77 -0.49 -2.28 16 24 C -0.15 -1.27 10.04 -26.75 -0.27 -1.54 16 25 C -0.15 -1.06 10.23 -26.75 -0.27 -1.34 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.08 0.49 5.99 -51.93 -0.31 0.18 16 29 H 0.11 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.11 1.33 7.42 -51.93 -0.39 0.94 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.39 10.15 7.71 -40.82 -0.31 9.84 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.07 1.33 8.00 -51.93 -0.42 0.91 16 38 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 39 H 0.13 0.94 6.44 -51.93 -0.33 0.60 16 40 H 0.11 1.13 7.67 -51.93 -0.40 0.73 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -35.10 359.36 -8.04 -43.14 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.77 Total: 7.49 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.30 Total: 8.74 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.54 Total: -62.18 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.18 Total: -19.51 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.10 -8.04 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182998830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.278 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds