Wall clock time and date at job start Tue Mar 31 2020 03:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 120.00259 * 2 1 4 4 C 1.50701 * 109.47255 * 270.00016 * 3 2 1 5 5 O 1.21283 * 119.99681 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99985 * 179.97438 * 4 3 2 7 7 C 1.47020 * 125.65115 * 0.02562 * 6 4 3 8 8 C 1.54324 * 107.27159 * 181.02103 * 7 6 4 9 9 C 1.55158 * 102.94284 * 22.19222 * 8 7 6 10 10 H 1.09002 * 111.00032 * 82.57216 * 9 8 7 11 11 N 1.46498 * 111.00176 * 206.41888 * 9 8 7 12 12 C 1.36930 * 120.00355 * 273.54254 * 11 9 8 13 13 H 1.07996 * 120.00082 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00123 * 180.02562 * 12 11 9 15 15 N 1.31618 * 120.00181 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00352 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46969 * 59.99847 * 16 14 12 18 18 H 1.48492 * 109.47150 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46980 * 300.00172 * 16 14 12 20 20 C 1.47432 * 125.64642 * 179.71292 * 6 4 3 21 21 C 1.34783 * 119.99603 * 180.02562 * 2 1 3 22 22 O 1.21280 * 119.99508 * 180.02562 * 21 2 1 23 23 C 1.50702 * 120.00171 * 359.97438 * 21 2 1 24 24 C 1.53000 * 117.49604 * 180.02562 * 23 21 2 25 25 C 1.52997 * 117.49669 * 248.62535 * 23 21 2 26 26 H 1.08998 * 109.47105 * 270.00451 * 1 2 3 27 27 H 1.09004 * 109.46734 * 29.99880 * 1 2 3 28 28 H 1.09000 * 109.47107 * 149.99827 * 1 2 3 29 29 H 1.09004 * 109.47095 * 30.00134 * 3 2 1 30 30 H 1.08998 * 109.47410 * 150.00106 * 3 2 1 31 31 H 1.09007 * 109.87845 * 300.43794 * 7 6 4 32 32 H 1.08993 * 109.88161 * 61.60313 * 7 6 4 33 33 H 1.09006 * 110.72006 * 140.55263 * 8 7 6 34 34 H 1.08994 * 110.72370 * 263.82994 * 8 7 6 35 35 H 0.97001 * 119.99789 * 93.55353 * 11 9 8 36 36 H 0.97004 * 120.00560 * 179.97438 * 15 14 12 37 37 H 1.08996 * 110.36819 * 274.75005 * 20 6 4 38 38 H 1.09000 * 110.36513 * 37.07593 * 20 6 4 39 39 H 1.09002 * 115.56044 * 34.30916 * 23 21 2 40 40 H 1.08990 * 117.49990 * 359.97438 * 24 23 21 41 41 H 1.09004 * 117.49237 * 214.97804 * 24 23 21 42 42 H 1.08999 * 117.49685 * 145.02383 * 25 23 21 43 43 H 1.08997 * 117.50044 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 8 2.0543 1.0214 -2.3426 6 7 3.1109 2.8514 -1.6670 7 6 3.6413 3.7701 -0.6491 8 6 4.2934 4.9533 -1.3949 9 6 3.5971 4.9167 -2.7809 10 1 2.6302 5.4186 -2.7458 11 7 4.4536 5.5034 -3.8145 12 6 4.4309 6.8543 -4.0369 13 1 3.7819 7.4874 -3.4502 14 6 5.2422 7.4102 -5.0166 15 7 6.0329 6.6387 -5.7321 16 14 5.2118 9.2532 -5.3197 17 1 5.6087 9.9655 -4.0786 18 1 6.1621 9.5914 -6.4094 19 1 3.8407 9.6679 -5.7114 20 6 3.4290 3.3905 -3.0019 21 6 2.1389 -1.1673 -0.0005 22 8 3.3517 -1.1673 -0.0001 23 6 1.3853 -2.4724 -0.0005 24 6 2.2074 -3.7628 -0.0005 25 6 1.4610 -3.3317 1.2630 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5138 31 1 2.8298 4.1318 -0.0175 32 1 4.3874 3.2587 -0.0410 33 1 4.0853 5.8933 -0.8835 34 1 5.3673 4.7990 -1.4987 35 1 5.0368 4.9349 -4.3414 36 1 6.5995 7.0270 -6.4170 37 1 4.3553 2.9547 -3.3762 38 1 2.6102 3.1958 -3.6946 39 1 0.4465 -2.4734 -0.5544 40 1 3.2932 -3.6677 -0.0010 41 1 1.8096 -4.6129 -0.5548 42 1 0.5720 -3.8982 1.5403 43 1 2.0561 -2.9534 2.0942 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182998830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:24 Heat of formation + Delta-G solvation = -40.253275 kcal Electronic energy + Delta-G solvation = -23699.761450 eV Core-core repulsion = 20166.696676 eV Total energy + Delta-G solvation = -3533.064774 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60374 -40.65020 -38.75411 -37.17366 -36.46336 -35.95205 -33.40949 -31.25564 -30.52794 -28.88934 -27.55733 -25.81716 -24.75394 -23.80661 -23.30796 -21.66421 -20.68464 -19.83200 -19.29534 -18.61891 -18.43069 -17.47215 -17.30569 -16.65389 -16.33457 -15.99504 -15.76980 -15.32526 -15.25408 -14.82376 -14.62609 -14.42558 -13.99557 -13.72251 -13.59771 -13.54247 -13.21869 -13.13579 -13.02393 -12.90041 -12.64278 -12.43992 -12.37276 -12.16130 -11.77963 -11.63157 -11.54857 -11.43006 -11.25851 -10.97023 -10.94155 -9.79180 -9.73071 -9.06918 -7.95664 -5.26669 1.28851 1.48646 1.50894 1.51936 1.57883 1.74480 2.12397 2.56867 2.89621 3.33492 3.47737 3.48919 3.69132 3.80282 3.90051 3.96732 4.02199 4.07948 4.16017 4.23758 4.28896 4.32104 4.34731 4.47275 4.67863 4.71187 4.73722 4.81231 4.84749 4.94888 4.97397 5.05607 5.12983 5.21710 5.23263 5.32286 5.41570 5.52826 6.23883 6.24286 6.46608 6.99181 7.09011 7.30685 8.02044 8.26122 9.27681 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.041854 B = 0.002625 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.838033 B =10662.258011 C =10816.696850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.599 5.599 3 C 0.107 3.893 4 C 0.503 3.497 5 O -0.585 6.585 6 N -0.612 5.612 7 C 0.104 3.896 8 C -0.145 4.145 9 C 0.168 3.832 10 H 0.067 0.933 11 N -0.732 5.732 12 C -0.240 4.240 13 H 0.084 0.916 14 C -0.077 4.077 15 N -0.972 5.972 16 Si 0.977 3.023 17 H -0.274 1.274 18 H -0.300 1.300 19 H -0.277 1.277 20 C 0.108 3.892 21 C 0.536 3.464 22 O -0.589 6.589 23 C -0.204 4.204 24 C -0.163 4.163 25 C -0.124 4.124 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.372 0.628 36 H 0.251 0.749 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.148 0.852 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.888 -15.584 20.026 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.330 5.330 3 C -0.020 4.020 4 C 0.292 3.708 5 O -0.465 6.465 6 N -0.346 5.346 7 C -0.018 4.018 8 C -0.186 4.186 9 C 0.058 3.942 10 H 0.085 0.915 11 N -0.371 5.371 12 C -0.372 4.372 13 H 0.102 0.898 14 C -0.269 4.269 15 N -0.622 5.622 16 Si 0.805 3.195 17 H -0.199 1.199 18 H -0.226 1.226 19 H -0.203 1.203 20 C -0.016 4.016 21 C 0.326 3.674 22 O -0.470 6.470 23 C -0.225 4.225 24 C -0.200 4.200 25 C -0.162 4.162 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.171 0.829 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.204 0.796 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.166 0.834 40 H 0.098 0.902 41 H 0.143 0.857 42 H 0.156 0.844 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.591 -15.809 19.590 29.097 hybrid contribution 0.871 0.940 -1.328 1.846 sum -13.720 -14.869 18.262 27.255 Atomic orbital electron populations 1.22115 0.76230 1.04307 1.03830 1.47542 1.08839 1.04239 1.72336 1.21407 1.01263 0.87796 0.91510 1.21631 0.76775 0.78981 0.93372 1.90667 1.53458 1.54304 1.48074 1.48556 1.55368 1.22260 1.08465 1.22309 0.99471 0.89589 0.90410 1.23217 1.00003 0.98211 0.97132 1.21493 0.93992 0.89735 0.89002 0.91502 1.42443 1.48284 1.05135 1.41238 1.19587 1.18642 0.84657 1.14266 0.89803 1.25635 0.99665 1.02395 0.99226 1.69830 1.30192 1.35930 1.26281 0.85165 0.77155 0.79928 0.77215 1.19935 1.22634 1.20324 1.22237 0.99494 0.94642 0.85248 1.20412 0.86987 0.85985 0.73987 1.90667 1.16220 1.88020 1.52080 1.22293 1.03269 0.88895 1.08042 1.23021 0.98894 0.95853 1.02225 1.23036 1.03581 0.99584 0.89963 0.88974 0.90979 0.89772 0.82887 0.87014 0.87495 0.89830 0.89076 0.92400 0.79605 0.94036 0.93411 0.92227 0.83450 0.90168 0.85704 0.84410 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.27 127.77 1.31 2.23 16 2 N -0.60 -12.47 2.36 -851.11 -2.01 -14.48 16 3 C 0.11 2.22 5.08 85.63 0.43 2.65 16 4 C 0.50 15.54 7.92 87.66 0.69 16.23 16 5 O -0.58 -23.31 16.68 -3.04 -0.05 -23.37 16 6 N -0.61 -18.52 3.32 -811.35 -2.70 -21.21 16 7 C 0.10 2.36 6.48 86.73 0.56 2.93 16 8 C -0.14 -4.41 6.64 31.78 0.21 -4.20 16 9 C 0.17 6.41 3.70 46.46 0.17 6.58 16 10 H 0.07 2.52 8.13 -2.39 -0.02 2.50 16 11 N -0.73 -36.47 5.28 -316.03 -1.67 -38.14 16 12 C -0.24 -12.93 9.98 84.03 0.84 -12.09 16 13 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 14 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 15 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 16 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 C 0.11 4.04 6.53 86.93 0.57 4.61 16 21 C 0.54 13.68 7.46 87.66 0.65 14.34 16 22 O -0.59 -20.48 15.84 -3.03 -0.05 -20.53 16 23 C -0.20 -3.46 5.29 -11.54 -0.06 -3.52 16 24 C -0.16 -2.65 10.04 30.58 0.31 -2.34 16 25 C -0.12 -1.43 10.23 30.58 0.31 -1.11 16 26 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.90 8.07 -2.39 -0.02 0.88 16 28 H 0.08 0.86 5.99 -2.39 -0.01 0.85 16 29 H 0.15 1.74 8.07 -2.38 -0.02 1.72 16 30 H 0.11 2.41 7.42 -2.39 -0.02 2.39 16 31 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.37 20.42 7.71 -92.71 -0.71 19.71 16 36 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.05 1.96 8.00 -2.39 -0.02 1.94 16 38 H 0.06 2.38 8.03 -2.39 -0.02 2.36 16 39 H 0.15 1.80 6.44 -2.39 -0.02 1.78 16 40 H 0.08 1.76 7.67 -2.39 -0.02 1.74 16 41 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -80.72 359.36 2.60 -78.12 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.29 Total: 29.25 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 6.47 Total: 22.39 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -6.09 Total: -133.25 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.10 Total: -43.90 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -80.72 2.60 -78.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182998830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.866 kcal (2) G-P(sol) polarization free energy of solvation -80.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds