Wall clock time and date at job start Tue Mar 31 2020 03:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 120.00006 * 2 1 4 4 N 1.34773 * 119.99894 * 179.97438 * 2 1 3 5 5 C 1.46495 * 120.00097 * 5.23849 * 4 2 1 6 6 C 1.46500 * 120.00133 * 185.23731 * 4 2 1 7 7 C 1.50697 * 109.47055 * 89.99903 * 6 4 2 8 8 O 1.21285 * 120.00362 * 0.02562 * 7 6 4 9 9 N 1.34783 * 119.99990 * 180.02562 * 7 6 4 10 10 C 1.47405 * 125.58522 * 0.02562 * 9 7 6 11 11 C 1.54868 * 104.81675 * 204.38007 * 10 9 7 12 12 C 1.55164 * 101.73438 * 322.77359 * 11 10 9 13 13 H 1.09003 * 113.90619 * 158.46924 * 12 11 10 14 14 C 1.53750 * 108.31295 * 285.38567 * 12 11 10 15 15 N 1.46591 * 108.11289 * 124.37771 * 14 12 11 16 16 C 1.36938 * 125.30738 * 181.24547 * 15 14 12 17 17 H 1.07993 * 120.00280 * 9.91576 * 16 15 14 18 18 C 1.38814 * 119.99301 * 190.18493 * 16 15 14 19 19 N 1.31619 * 120.00330 * 11.24828 * 18 16 15 20 20 Si 1.86799 * 119.99672 * 191.24092 * 18 16 15 21 21 H 1.48509 * 109.46974 * 94.98309 * 20 18 16 22 22 H 1.48501 * 109.47039 * 214.98078 * 20 18 16 23 23 H 1.48503 * 109.47472 * 334.98509 * 20 18 16 24 24 C 1.46714 * 109.37666 * 1.50492 * 15 14 12 25 25 C 1.46701 * 125.58954 * 180.02562 * 9 7 6 26 26 H 1.09004 * 111.53461 * 56.11629 * 25 9 7 27 27 H 1.09005 * 109.47085 * 185.69141 * 1 2 3 28 28 H 1.09005 * 109.47332 * 305.68791 * 1 2 3 29 29 H 1.08994 * 109.47115 * 65.68586 * 1 2 3 30 30 H 1.09001 * 109.47432 * 275.41059 * 5 4 2 31 31 H 1.09003 * 109.47163 * 35.41605 * 5 4 2 32 32 H 1.09004 * 109.47350 * 155.41312 * 5 4 2 33 33 H 1.09004 * 109.46777 * 330.00332 * 6 4 2 34 34 H 1.08993 * 109.47687 * 210.00539 * 6 4 2 35 35 H 1.09001 * 110.37367 * 323.21217 * 10 9 7 36 36 H 1.08994 * 110.37100 * 85.43674 * 10 9 7 37 37 H 1.08998 * 110.97615 * 204.65791 * 11 10 9 38 38 H 1.09005 * 110.97021 * 80.88496 * 11 10 9 39 39 H 1.09001 * 109.74400 * 4.69733 * 14 12 11 40 40 H 1.09013 * 109.73943 * 244.04840 * 14 12 11 41 41 H 0.96997 * 120.00104 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.98315 * 101.18235 * 24 15 14 43 43 H 1.08991 * 109.98597 * 222.48662 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4530 -2.4333 -0.1147 6 6 3.6413 -1.1698 0.1163 7 6 4.0297 -1.2349 1.5709 8 8 3.1712 -1.2756 2.4267 9 7 5.3312 -1.2479 1.9210 10 6 6.4711 -1.2026 0.9874 11 6 7.6434 -1.8540 1.7618 12 6 7.3956 -1.3364 3.2035 13 1 7.8642 -1.9441 3.9776 14 6 7.8076 0.1436 3.2629 15 7 6.6598 0.9172 3.7459 16 6 6.6337 2.2766 3.9088 17 1 7.4427 2.8818 3.5273 18 6 5.5700 2.8760 4.5692 19 7 4.7039 2.1364 5.2289 20 14 5.3680 4.7324 4.5218 21 1 4.4352 5.1010 3.4265 22 1 4.8194 5.2039 5.8187 23 1 6.6885 5.3682 4.2823 24 6 5.5456 0.0070 4.0333 25 6 5.8456 -1.3096 3.2935 26 1 5.4584 -2.1775 3.8273 27 1 -0.3633 -1.0226 0.1019 28 1 -0.3634 0.5995 0.8347 29 1 -0.3633 0.4231 -0.9365 30 1 1.1078 -2.7450 0.8710 31 1 0.5957 -2.3007 -0.7748 32 1 2.1139 -3.1962 -0.5263 33 1 4.0425 -0.2581 -0.3264 34 1 4.0458 -2.0362 -0.4069 35 1 6.2470 -1.7744 0.0869 36 1 6.7105 -0.1707 0.7309 37 1 8.6036 -1.5053 1.3817 38 1 7.5811 -2.9415 1.7215 39 1 8.0910 0.4872 2.2680 40 1 8.6475 0.2648 3.9471 41 1 3.9609 2.5553 5.6907 42 1 5.4788 -0.1728 5.1063 43 1 4.6119 0.4342 3.6679 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186939045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:10 Heat of formation + Delta-G solvation = -52.654778 kcal Electronic energy + Delta-G solvation = -25444.945484 eV Core-core repulsion = 21911.342941 eV Total energy + Delta-G solvation = -3533.602544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74211 -40.79964 -39.15253 -36.54799 -36.45848 -34.04355 -32.49809 -31.82601 -30.61339 -28.94603 -27.91228 -26.92272 -26.51711 -23.82224 -22.73362 -21.21399 -20.54388 -19.78582 -18.98040 -18.28901 -18.11795 -17.45602 -17.05455 -16.88284 -16.36980 -15.81847 -15.75343 -15.44252 -14.67376 -14.52415 -14.38274 -14.22433 -14.00732 -13.85200 -13.69402 -13.43557 -13.25199 -13.07191 -13.01623 -12.95932 -12.89828 -12.58805 -12.48033 -12.11476 -11.92296 -11.87784 -11.63228 -11.48905 -11.14275 -11.01715 -10.74101 -9.74959 -9.60347 -8.89876 -7.93947 -5.29351 1.33187 1.38490 1.39542 1.46272 1.63473 1.91792 2.29043 2.41903 3.24575 3.37417 3.59201 3.66140 3.74993 3.79709 3.97011 4.10838 4.24200 4.30177 4.31851 4.39858 4.48515 4.50233 4.57205 4.62982 4.68600 4.74219 4.84168 4.91108 4.93614 5.02251 5.09591 5.18214 5.29891 5.33046 5.38223 5.41483 5.59913 5.68104 6.14385 6.28861 6.61370 7.01260 7.06728 7.21283 7.73873 8.36326 9.16397 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.006495 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.352922 B = 4309.818570 C = 5887.878412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.498 3.502 3 O -0.605 6.605 4 N -0.604 5.604 5 C 0.074 3.926 6 C 0.107 3.893 7 C 0.497 3.503 8 O -0.584 6.584 9 N -0.602 5.602 10 C 0.091 3.909 11 C -0.102 4.102 12 C -0.096 4.096 13 H 0.122 0.878 14 C 0.133 3.867 15 N -0.618 5.618 16 C -0.242 4.242 17 H 0.085 0.915 18 C -0.070 4.070 19 N -0.948 5.948 20 Si 0.972 3.028 21 H -0.299 1.299 22 H -0.291 1.291 23 H -0.254 1.254 24 C 0.188 3.812 25 C 0.118 3.882 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.119 0.881 36 H 0.051 0.949 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.243 0.757 42 H -0.009 1.009 43 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -16.626 -16.491 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.289 3.711 3 O -0.486 6.486 4 N -0.335 5.335 5 C -0.067 4.067 6 C -0.020 4.020 7 C 0.286 3.714 8 O -0.464 6.464 9 N -0.336 5.336 10 C -0.030 4.030 11 C -0.139 4.139 12 C -0.116 4.116 13 H 0.140 0.860 14 C 0.009 3.991 15 N -0.344 5.344 16 C -0.371 4.371 17 H 0.103 0.897 18 C -0.263 4.263 19 N -0.596 5.596 20 Si 0.801 3.199 21 H -0.227 1.227 22 H -0.218 1.218 23 H -0.178 1.178 24 C 0.061 3.939 25 C 0.013 3.987 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.177 0.823 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.052 0.948 42 H 0.009 0.991 43 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -0.712 -15.981 -16.006 22.630 hybrid contribution -0.551 1.666 1.086 2.063 sum -1.263 -14.316 -14.920 20.716 Atomic orbital electron populations 1.21966 0.87916 1.06641 1.05766 1.21816 0.92819 0.82679 0.73763 1.90732 1.72199 1.33571 1.52112 1.47697 1.05980 1.08122 1.71750 1.22169 0.98625 0.83415 1.02458 1.21379 0.82660 1.06790 0.91137 1.21630 0.81073 0.75593 0.93121 1.90672 1.50174 1.51771 1.53798 1.48460 1.05567 1.71620 1.07922 1.22673 0.85445 1.01208 0.93683 1.22824 0.98322 1.01813 0.90971 1.23095 0.91634 0.95980 1.00845 0.86007 1.21498 0.89738 0.90670 0.97239 1.44448 1.10263 1.02634 1.77075 1.19411 1.05931 0.82441 1.29356 0.89707 1.25745 0.98783 1.02575 0.99230 1.70231 1.16950 1.35200 1.37209 0.85143 0.78389 0.80081 0.76331 1.22716 1.21785 1.17786 1.20869 0.90445 0.88332 0.94228 1.22428 0.95727 0.96729 0.83816 0.90079 0.86834 0.89966 0.86534 0.93307 0.87573 0.87907 0.88633 0.82261 0.86338 0.93102 0.87145 0.87479 0.94224 0.95797 0.94845 0.99083 0.97694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.89 71.24 0.70 -2.82 16 2 C 0.50 16.51 7.77 87.66 0.68 17.19 16 3 O -0.60 -27.72 16.65 -3.03 -0.05 -27.77 16 4 N -0.60 -16.15 2.36 -851.15 -2.01 -18.16 16 5 C 0.07 1.11 9.69 127.77 1.24 2.35 16 6 C 0.11 2.94 4.97 85.63 0.43 3.37 16 7 C 0.50 19.21 7.55 87.65 0.66 19.87 16 8 O -0.58 -28.72 16.15 -3.05 -0.05 -28.77 16 9 N -0.60 -21.40 3.01 -785.29 -2.37 -23.77 16 10 C 0.09 2.21 6.23 86.84 0.54 2.75 16 11 C -0.10 -1.96 6.30 31.97 0.20 -1.76 16 12 C -0.10 -2.94 4.25 -9.02 -0.04 -2.98 16 13 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 14 C 0.13 5.35 6.41 86.61 0.56 5.91 16 15 N -0.62 -34.08 3.38 -697.88 -2.36 -36.44 16 16 C -0.24 -14.73 10.20 84.03 0.86 -13.87 16 17 H 0.09 4.86 7.85 -2.91 -0.02 4.84 16 18 C -0.07 -4.43 5.38 84.86 0.46 -3.98 16 19 N -0.95 -64.65 10.68 21.65 0.23 -64.42 16 20 Si 0.97 50.97 29.57 68.60 2.03 53.00 16 21 H -0.30 -16.11 7.11 99.48 0.71 -15.40 16 22 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 23 H -0.25 -12.09 7.11 99.48 0.71 -11.38 16 24 C 0.19 10.55 4.92 86.67 0.43 10.98 16 25 C 0.12 4.75 3.66 46.06 0.17 4.92 16 26 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 27 H 0.11 1.59 5.83 -2.38 -0.01 1.58 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 0.89 6.65 -2.39 -0.02 0.88 16 32 H 0.10 0.92 7.83 -2.39 -0.02 0.90 16 33 H 0.10 3.00 7.36 -2.38 -0.02 2.98 16 34 H 0.16 2.39 7.56 -2.39 -0.02 2.37 16 35 H 0.12 1.71 7.46 -2.39 -0.02 1.69 16 36 H 0.05 1.48 7.49 -2.39 -0.02 1.47 16 37 H 0.11 1.64 7.96 -2.39 -0.02 1.62 16 38 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.04 1.49 6.78 -2.39 -0.02 1.47 16 40 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.24 16.24 8.31 -92.71 -0.77 15.47 16 42 H -0.01 -0.55 7.76 -2.39 -0.02 -0.57 16 43 H 0.00 0.31 6.41 -2.39 -0.02 0.30 16 Total: -1.00 -100.49 342.61 3.31 -97.18 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.00 Total: 7.20 kcal Atomic # 6 Polarization: 35.06 SS G_CDS: 6.88 Total: 41.94 kcal Atomic # 7 Polarization: -136.29 SS G_CDS: -6.50 Total: -142.79 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -0.10 Total: -56.54 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.03 Total: 53.00 kcal Total: -100.49 3.31 -97.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186939045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.529 kcal (2) G-P(sol) polarization free energy of solvation -100.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds