Wall clock time and date at job start Tue Mar 31 2020 03:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46494 * 119.99753 * 2 1 4 4 C 1.34779 * 119.99981 * 180.02562 * 2 1 3 5 5 O 1.21280 * 119.99688 * 355.35735 * 4 2 1 6 6 C 1.50689 * 119.99917 * 175.35925 * 4 2 1 7 7 C 1.50705 * 115.55495 * 66.82133 * 6 4 2 8 8 O 1.21276 * 120.00353 * 222.02981 * 7 6 4 9 9 N 1.34775 * 119.99379 * 42.02062 * 7 6 4 10 10 C 1.47024 * 125.65165 * 355.13374 * 9 7 6 11 11 C 1.54329 * 107.26852 * 181.02440 * 10 9 7 12 12 C 1.55147 * 102.94441 * 22.19777 * 11 10 9 13 13 H 1.09004 * 111.00702 * 82.56889 * 12 11 10 14 14 N 1.46501 * 111.03822 * 206.40853 * 12 11 10 15 15 C 1.36937 * 119.99987 * 270.39358 * 14 12 11 16 16 H 1.08002 * 120.00078 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00226 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99885 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00215 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47293 * 89.99776 * 19 17 15 21 21 H 1.48508 * 109.47285 * 210.00042 * 19 17 15 22 22 H 1.48498 * 109.47245 * 329.99415 * 19 17 15 23 23 C 1.47434 * 125.64603 * 175.09901 * 9 7 6 24 24 C 1.53000 * 117.51958 * 212.51946 * 6 4 2 25 25 C 1.53002 * 60.00081 * 107.48110 * 24 6 4 26 26 H 1.08996 * 109.47014 * 269.99837 * 1 2 3 27 27 H 1.09000 * 109.47214 * 29.99961 * 1 2 3 28 28 H 1.09004 * 109.46878 * 150.00066 * 1 2 3 29 29 H 1.09003 * 109.46624 * 185.23551 * 3 2 1 30 30 H 1.08993 * 109.47602 * 305.23874 * 3 2 1 31 31 H 1.09000 * 109.47206 * 65.23897 * 3 2 1 32 32 H 1.08991 * 109.88508 * 300.44297 * 10 9 7 33 33 H 1.09000 * 109.87552 * 61.61530 * 10 9 7 34 34 H 1.09000 * 110.71956 * 263.83405 * 11 10 9 35 35 H 1.09001 * 110.71604 * 140.56655 * 11 10 9 36 36 H 0.97004 * 120.00023 * 90.39301 * 14 12 11 37 37 H 0.97003 * 119.99777 * 180.02562 * 18 17 15 38 38 H 1.08996 * 110.36586 * 37.06533 * 23 9 7 39 39 H 1.08993 * 110.36324 * 274.74644 * 23 9 7 40 40 H 1.08998 * 117.50099 * 214.97079 * 24 6 4 41 41 H 1.09003 * 117.49761 * 359.97438 * 24 6 4 42 42 H 1.08997 * 117.49815 * 252.51196 * 25 24 6 43 43 H 1.09005 * 117.49609 * 107.49153 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5355 -2.2158 0.0840 6 6 3.6421 -1.1693 -0.1061 7 6 4.3775 -0.5855 1.0727 8 8 5.3336 0.1386 0.8930 9 7 3.9723 -0.8679 2.3267 10 6 2.7761 -1.6433 2.6865 11 6 2.7038 -1.6854 4.2276 12 6 3.5489 -0.4544 4.6488 13 1 2.9566 0.4597 4.6052 14 7 4.1222 -0.6420 5.9839 15 6 3.4238 -0.2414 7.0915 16 1 2.4500 0.2126 6.9809 17 6 3.9667 -0.4196 8.3565 18 7 5.1532 -0.9733 8.4913 19 14 3.0136 0.1263 9.8674 20 1 2.1625 -0.9922 10.3467 21 1 3.9652 0.5182 10.9381 22 1 2.1555 1.2870 9.5188 23 6 4.6556 -0.4511 3.5649 24 6 4.2979 -2.3427 -0.8369 25 6 4.2532 -0.9613 -1.4933 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 3.2654 1.0716 -0.0938 30 1 1.8657 1.8799 -0.8393 31 1 2.0064 1.7986 0.9332 32 1 1.8857 -1.1582 2.2868 33 1 2.8581 -2.6559 2.2915 34 1 3.1459 -2.6056 4.6094 35 1 1.6737 -1.5809 4.5682 36 1 4.9966 -1.0501 6.0833 37 1 5.5324 -1.0982 9.3754 38 1 5.0713 0.5499 3.4501 39 1 5.4409 -1.1617 3.8223 40 1 5.2610 -2.6923 -0.4651 41 1 3.6419 -3.1137 -1.2412 42 1 3.5679 -0.8234 -2.3296 43 1 5.1870 -0.4022 -1.5533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186982096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:05 Heat of formation + Delta-G solvation = -12.281008 kcal Electronic energy + Delta-G solvation = -24997.831540 eV Core-core repulsion = 21465.979734 eV Total energy + Delta-G solvation = -3531.851806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15311 -39.17320 -37.73272 -36.09287 -35.62855 -34.17138 -31.57163 -29.58833 -28.76702 -28.03572 -26.73006 -24.90381 -23.35787 -22.76485 -22.66116 -20.55651 -20.13482 -18.71383 -17.73829 -17.35884 -16.55809 -16.14068 -16.00454 -15.75674 -15.23056 -14.76594 -14.50994 -13.94874 -13.65631 -13.40136 -13.35964 -13.11350 -12.79752 -12.73377 -12.71005 -12.46275 -12.26916 -11.98902 -11.85995 -11.54537 -11.30764 -11.19814 -10.86537 -10.80702 -10.71973 -10.31842 -10.22819 -10.08517 -9.79785 -9.68644 -8.98812 -8.97570 -8.49590 -7.08023 -5.84864 -3.15692 2.23510 2.39010 2.64833 2.91632 3.39548 3.44853 3.46519 3.58552 4.13180 4.34909 4.51569 4.52630 4.54192 4.89275 5.01912 5.05554 5.12085 5.17198 5.31201 5.34514 5.36302 5.43286 5.52751 5.54210 5.56572 5.58124 5.65918 5.72393 5.83312 5.96786 6.12273 6.16088 6.18254 6.35463 6.48621 6.58243 6.87316 6.99691 7.58395 7.62826 7.85806 8.10932 8.32366 9.44124 9.97351 10.32595 11.37332 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.003887 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.652734 B = 7200.988719 C = 7692.949505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.614 5.614 3 C 0.070 3.930 4 C 0.558 3.442 5 O -0.527 6.527 6 C -0.196 4.196 7 C 0.569 3.431 8 O -0.538 6.538 9 N -0.603 5.603 10 C 0.099 3.901 11 C -0.153 4.153 12 C 0.173 3.827 13 H 0.064 0.936 14 N -0.714 5.714 15 C -0.246 4.246 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.098 3.902 24 C -0.120 4.120 25 C -0.130 4.130 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.380 1.342 -21.163 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.348 5.348 3 C -0.073 4.073 4 C 0.345 3.655 5 O -0.403 6.403 6 C -0.202 4.202 7 C 0.356 3.644 8 O -0.416 6.416 9 N -0.335 5.335 10 C -0.024 4.024 11 C -0.195 4.195 12 C 0.061 3.939 13 H 0.082 0.918 14 N -0.354 5.354 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.025 4.025 24 C -0.158 4.158 25 C -0.168 4.168 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.295 1.284 -21.098 22.054 hybrid contribution -0.371 0.158 1.040 1.115 sum -6.666 1.442 -20.058 21.186 Atomic orbital electron populations 1.21671 0.78541 1.03056 1.02387 1.47646 1.07233 1.06349 1.73570 1.21982 0.98131 0.84918 1.02277 1.19150 0.87176 0.83469 0.75678 1.90720 1.69343 1.31089 1.49125 1.21447 0.92847 1.10073 0.95857 1.18540 0.83633 0.80517 0.81754 1.90715 1.28691 1.37450 1.84725 1.48362 1.27101 1.52984 1.05089 1.22281 0.86664 0.95574 0.97916 1.23425 1.02396 1.02528 0.91103 1.21273 0.91884 0.95322 0.85385 0.91800 1.42250 1.21209 1.72926 0.99009 1.19206 1.00060 1.33542 0.84831 0.90999 1.24765 0.96880 1.01283 0.97599 1.69664 1.16660 1.48827 1.22584 0.86168 0.78746 0.78213 0.82896 1.21601 1.21686 1.20679 1.22630 0.96354 1.00773 0.82700 1.23053 1.01938 0.91331 0.99480 1.23120 1.03008 0.99687 0.90947 0.92292 0.91019 0.90490 0.89614 0.91508 0.91715 0.92044 0.91337 0.90444 0.90753 0.77903 0.93320 0.90287 0.91045 0.87253 0.86858 0.87648 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.45 59.85 0.63 1.37 16 2 N -0.61 -6.65 3.16 -189.52 -0.60 -7.25 16 3 C 0.07 0.66 10.26 59.84 0.61 1.27 16 4 C 0.56 7.23 4.09 -10.99 -0.04 7.18 16 5 O -0.53 -8.05 15.48 5.56 0.09 -7.96 16 6 C -0.20 -2.44 1.05 -156.81 -0.16 -2.61 16 7 C 0.57 8.73 5.70 -10.98 -0.06 8.67 16 8 O -0.54 -9.44 16.23 5.56 0.09 -9.35 16 9 N -0.60 -9.68 3.33 -170.52 -0.57 -10.24 16 10 C 0.10 1.53 5.25 -3.06 -0.02 1.52 16 11 C -0.15 -2.66 6.65 -24.90 -0.17 -2.83 16 12 C 0.17 3.38 3.70 -65.79 -0.24 3.13 16 13 H 0.06 1.26 8.11 -51.93 -0.42 0.84 16 14 N -0.71 -17.35 5.26 -51.35 -0.27 -17.62 16 15 C -0.25 -6.61 9.97 -15.06 -0.15 -6.76 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 19 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.10 1.75 6.56 -2.52 -0.02 1.73 16 24 C -0.12 -1.26 9.76 -26.73 -0.26 -1.52 16 25 C -0.13 -1.25 9.36 -26.73 -0.25 -1.50 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 28 H 0.08 0.71 7.49 -51.93 -0.39 0.32 16 29 H 0.09 0.95 4.61 -51.93 -0.24 0.71 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.94 6.22 -51.93 -0.32 0.61 16 33 H 0.07 1.07 7.90 -51.93 -0.41 0.66 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.39 10.00 7.73 -40.82 -0.32 9.69 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.08 1.44 7.99 -51.93 -0.42 1.02 16 39 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 40 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.11 1.12 8.02 -51.93 -0.42 0.70 16 42 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.12 1.15 7.69 -51.93 -0.40 0.75 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -31.97 350.66 -7.18 -39.14 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.67 Total: 8.58 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.23 Total: 9.32 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.71 Total: -61.89 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.18 Total: -17.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.97 -7.18 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186982096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.862 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds