Wall clock time and date at job start Tue Mar 31 2020 03:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00721 * 2 1 4 4 O 1.21282 * 119.99353 * 355.12802 * 3 2 1 5 5 C 1.50700 * 120.00408 * 175.13481 * 3 2 1 6 6 C 1.50698 * 115.54852 * 298.79405 * 5 3 2 7 7 O 1.21283 * 120.00070 * 93.35151 * 6 5 3 8 8 N 1.34770 * 119.99616 * 273.62361 * 6 5 3 9 9 C 1.47430 * 125.65253 * 4.37500 * 8 6 5 10 10 C 1.55131 * 104.72261 * 155.81549 * 9 8 6 11 11 C 1.55163 * 101.48493 * 37.29841 * 10 9 8 12 12 H 1.09000 * 110.71746 * 82.69443 * 11 10 9 13 13 N 1.46502 * 110.86884 * 205.89628 * 11 10 9 14 14 C 1.46499 * 120.00003 * 53.61158 * 13 11 10 15 15 C 1.36940 * 119.99603 * 233.60590 * 13 11 10 16 16 H 1.07992 * 120.00248 * 21.12906 * 15 13 11 17 17 C 1.38810 * 119.99616 * 201.12197 * 15 13 11 18 18 N 1.31618 * 120.00617 * 10.55336 * 17 15 13 19 19 Si 1.86804 * 119.99829 * 190.54611 * 17 15 13 20 20 H 1.48499 * 109.47148 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46927 * 120.00023 * 19 17 15 22 22 H 1.48494 * 109.47197 * 240.00243 * 19 17 15 23 23 C 1.47025 * 125.64649 * 184.68454 * 8 6 5 24 24 C 1.53007 * 117.51535 * 84.49356 * 5 3 2 25 25 C 1.53001 * 117.49655 * 153.12330 * 5 3 2 26 26 H 1.09001 * 109.47047 * 300.00885 * 1 2 3 27 27 H 1.09002 * 109.46823 * 60.00125 * 1 2 3 28 28 H 1.08993 * 109.47456 * 180.02562 * 1 2 3 29 29 H 0.97004 * 119.99830 * 179.97438 * 2 1 3 30 30 H 1.08998 * 110.36850 * 274.74946 * 9 8 6 31 31 H 1.08999 * 110.36444 * 37.07013 * 9 8 6 32 32 H 1.09003 * 111.19511 * 279.19473 * 10 9 8 33 33 H 1.09003 * 110.90661 * 155.27335 * 10 9 8 34 34 H 1.09004 * 109.46822 * 94.77313 * 14 13 11 35 35 H 1.08997 * 109.46990 * 214.76747 * 14 13 11 36 36 H 1.08993 * 109.47381 * 334.76966 * 14 13 11 37 37 H 0.96990 * 120.00343 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.88344 * 300.44118 * 23 8 6 39 39 H 1.09003 * 109.88309 * 61.44924 * 23 8 6 40 40 H 1.08997 * 117.49537 * 214.96910 * 24 5 3 41 41 H 1.08996 * 117.49835 * 359.97438 * 24 5 3 42 42 H 1.08996 * 117.49992 * 359.97376 * 25 5 3 43 43 H 1.08997 * 117.49817 * 145.00123 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5359 2.2156 -0.0892 5 6 3.6419 1.1694 0.1107 6 6 4.2015 0.5666 1.3734 7 8 4.5193 -0.6036 1.3977 8 7 4.3437 1.3266 2.4773 9 6 3.9105 2.7289 2.6168 10 6 3.7119 2.9303 4.1421 11 6 4.8784 2.0858 4.7197 12 1 5.8071 2.6563 4.7142 13 7 4.5657 1.6210 6.0734 14 6 3.3220 0.8899 6.3279 15 6 5.4362 1.8699 7.1008 16 1 6.1565 2.6701 7.0164 17 6 5.3926 1.0937 8.2508 18 7 4.6666 -0.0038 8.2770 19 14 6.3646 1.6068 9.7613 20 1 7.0930 2.8690 9.4761 21 1 5.4348 1.8188 10.8997 22 1 7.3380 0.5408 10.1091 23 6 4.9623 0.8965 3.7398 24 6 4.4459 0.9831 -1.1778 25 6 4.3934 2.3539 -0.5001 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9499 -0.8401 0.0004 30 1 4.6797 3.4029 2.2397 31 1 2.9712 2.8902 2.0878 32 1 2.7480 2.5402 4.4689 33 1 3.8187 3.9807 4.4129 34 1 3.5146 -0.1820 6.2811 35 1 2.9446 1.1484 7.3172 36 1 2.5816 1.1593 5.5748 37 1 4.6359 -0.5459 9.0806 38 1 4.4204 0.0425 4.1461 39 1 6.0045 0.6268 3.5690 40 1 5.3795 0.4246 -1.1120 41 1 3.8877 0.8584 -2.1056 42 1 3.8008 3.1313 -0.9823 43 1 5.2926 2.6972 0.0113 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192825323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:52 Heat of formation + Delta-G solvation = -7.422533 kcal Electronic energy + Delta-G solvation = -24811.138330 eV Core-core repulsion = 21279.497204 eV Total energy + Delta-G solvation = -3531.641126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.79887 -39.19174 -37.58371 -36.14979 -34.83977 -34.70591 -31.63775 -29.72862 -28.22208 -27.68610 -26.08120 -24.97922 -23.16557 -22.77930 -22.28637 -21.04422 -19.40079 -19.16363 -17.70538 -17.06675 -16.42644 -16.00516 -15.99027 -15.56612 -15.05901 -14.84556 -14.46337 -13.94649 -13.64086 -13.33906 -13.22588 -13.00613 -12.63415 -12.50165 -12.48773 -12.19232 -11.94110 -11.76816 -11.51145 -11.29885 -10.92777 -10.87313 -10.79813 -10.57332 -10.43950 -10.26464 -10.19548 -9.89363 -9.82404 -9.61526 -9.33957 -8.60046 -8.36374 -6.86162 -5.77460 -3.24543 2.19180 2.62964 2.94843 2.99999 3.35359 3.42358 3.44360 3.57314 4.37786 4.41851 4.45724 4.54930 4.67339 5.01486 5.02913 5.22828 5.29169 5.31860 5.33806 5.40857 5.54434 5.56934 5.59608 5.61835 5.81484 5.83202 5.89066 6.00567 6.16091 6.31891 6.35946 6.49493 6.61876 6.81475 6.85193 7.22628 7.36879 7.69720 7.70732 7.77774 7.96642 8.23379 8.32836 9.17170 9.79179 10.27241 11.26956 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.003771 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.523513 B = 7424.128397 C = 7688.944401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.727 5.727 3 C 0.562 3.438 4 O -0.530 6.530 5 C -0.191 4.191 6 C 0.564 3.436 7 O -0.536 6.536 8 N -0.601 5.601 9 C 0.100 3.900 10 C -0.153 4.153 11 C 0.173 3.827 12 H 0.079 0.921 13 N -0.587 5.587 14 C 0.162 3.838 15 C -0.260 4.260 16 H 0.072 0.928 17 C 0.004 3.996 18 N -0.907 5.907 19 Si 0.908 3.092 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.086 3.914 24 C -0.129 4.129 25 C -0.131 4.131 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.409 0.591 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.049 0.951 36 H 0.000 1.000 37 H 0.253 0.747 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 2.950 -18.231 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.378 5.378 3 C 0.347 3.653 4 O -0.406 6.406 5 C -0.198 4.198 6 C 0.350 3.650 7 O -0.414 6.414 8 N -0.334 5.334 9 C -0.023 4.023 10 C -0.193 4.193 11 C 0.063 3.937 12 H 0.097 0.903 13 N -0.307 5.307 14 C 0.017 3.983 15 C -0.389 4.389 16 H 0.090 0.910 17 C -0.195 4.195 18 N -0.551 5.551 19 Si 0.738 3.262 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C -0.038 4.038 24 C -0.167 4.167 25 C -0.169 4.169 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.243 0.757 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.018 0.982 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.851 2.904 -18.104 18.966 hybrid contribution 0.632 -0.387 0.933 1.192 sum -4.219 2.516 -17.170 17.859 Atomic orbital electron populations 1.21585 0.79085 1.02548 1.02415 1.45743 1.07929 1.08941 1.75190 1.19017 0.86835 0.83804 0.75676 1.90706 1.69307 1.31436 1.49115 1.21407 0.92743 1.09242 0.96378 1.18639 0.78749 0.85390 0.82243 1.90712 1.51340 1.15600 1.83726 1.48503 1.58345 1.13740 1.12763 1.22446 0.99681 0.81893 0.98292 1.23388 1.01982 1.01537 0.92363 1.21352 0.95822 0.91663 0.84889 0.90274 1.43943 1.20058 1.65080 1.01600 1.20825 0.84863 0.95542 0.97034 1.19303 1.13916 1.11359 0.94335 0.90998 1.25042 0.99407 0.95570 0.99454 1.70090 1.43209 1.14090 1.27735 0.86135 0.79308 0.77836 0.82946 1.20263 1.21589 1.21666 1.23017 0.97332 1.01154 0.82339 1.23063 1.01086 0.99717 0.92847 1.23106 1.01187 0.91425 1.01170 0.92004 0.92044 0.90385 0.75678 0.91416 0.90797 0.90420 0.90259 0.95269 0.93277 0.98188 0.93669 0.90786 0.92048 0.87078 0.87524 0.86801 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.71 59.84 0.64 1.43 16 2 N -0.73 -8.20 5.71 -67.08 -0.38 -8.58 16 3 C 0.56 7.56 6.84 -10.99 -0.08 7.48 16 4 O -0.53 -8.33 16.49 5.56 0.09 -8.24 16 5 C -0.19 -2.42 1.44 -156.81 -0.23 -2.65 16 6 C 0.56 9.12 6.96 -10.99 -0.08 9.04 16 7 O -0.54 -10.24 17.40 5.55 0.10 -10.14 16 8 N -0.60 -9.93 3.32 -170.38 -0.57 -10.50 16 9 C 0.10 1.43 6.01 -2.41 -0.01 1.42 16 10 C -0.15 -2.50 6.61 -24.46 -0.16 -2.66 16 11 C 0.17 3.40 3.43 -66.09 -0.23 3.17 16 12 H 0.08 1.51 7.92 -51.93 -0.41 1.10 16 13 N -0.59 -14.25 2.94 -171.39 -0.50 -14.75 16 14 C 0.16 3.95 7.80 59.85 0.47 4.42 16 15 C -0.26 -6.93 9.65 -15.06 -0.15 -7.07 16 16 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 17 C 0.00 0.10 5.15 -17.43 -0.09 0.01 16 18 N -0.91 -26.10 10.47 55.49 0.58 -25.52 16 19 Si 0.91 21.48 29.57 -169.99 -5.03 16.45 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.09 1.66 6.51 -3.06 -0.02 1.64 16 24 C -0.13 -1.25 9.92 -26.72 -0.27 -1.52 16 25 C -0.13 -1.33 8.97 -26.73 -0.24 -1.57 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.41 4.21 8.83 -40.82 -0.36 3.85 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.06 7.43 -51.93 -0.39 0.68 16 32 H 0.08 1.38 6.07 -51.93 -0.32 1.07 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 35 H 0.05 1.29 7.11 -51.93 -0.37 0.92 16 36 H 0.00 -0.01 6.04 -51.93 -0.31 -0.32 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.07 1.65 7.12 -51.93 -0.37 1.28 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.11 1.10 7.92 -51.93 -0.41 0.69 16 43 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -32.47 352.42 -7.50 -39.97 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.67 Total: 2.85 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -0.43 Total: 13.15 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.87 Total: -59.36 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.19 Total: -18.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.47 -7.50 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192825323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.544 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds