Wall clock time and date at job start Tue Mar 31 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00258 * 2 1 4 4 N 1.34772 * 120.00220 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00529 * 179.97438 * 4 2 1 6 6 H 1.09004 * 112.94993 * 336.41648 * 5 4 2 7 7 C 1.54144 * 113.57861 * 107.81970 * 5 4 2 8 8 C 1.53944 * 87.22659 * 89.82073 * 7 5 4 9 9 H 1.09000 * 113.66548 * 270.13711 * 8 7 5 10 10 N 1.46906 * 113.66224 * 139.17350 * 8 7 5 11 11 C 1.46902 * 110.99573 * 106.01423 * 10 8 7 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 8 13 13 O 1.21294 * 120.00016 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99715 * 179.97438 * 12 11 10 15 15 C 1.37092 * 119.99635 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00232 * 359.97438 * 15 14 12 17 17 C 1.38952 * 119.99714 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47386 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46827 * 120.00111 * 19 17 15 22 22 H 1.48504 * 109.47265 * 239.99442 * 19 17 15 23 23 C 1.52908 * 113.66637 * 205.00523 * 5 4 2 24 24 C 1.52907 * 121.13634 * 36.14883 * 23 5 4 25 25 C 1.53951 * 86.78474 * 100.81930 * 24 23 5 26 26 C 1.52910 * 121.13705 * 144.70842 * 23 5 4 27 27 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47079 * 300.00402 * 1 2 3 29 29 H 1.09002 * 109.47200 * 60.00164 * 1 2 3 30 30 H 0.97005 * 120.00032 * 0.02562 * 4 2 1 31 31 H 1.09000 * 113.63748 * 335.23778 * 7 5 4 32 32 H 1.09004 * 113.58470 * 204.39312 * 7 5 4 33 33 H 1.00896 * 111.00309 * 342.05835 * 10 8 7 34 34 H 1.08990 * 109.47358 * 299.99539 * 11 10 8 35 35 H 1.09004 * 109.47457 * 60.00221 * 11 10 8 36 36 H 0.96993 * 119.99587 * 0.02562 * 14 12 11 37 37 H 0.96997 * 119.99955 * 180.02562 * 18 17 15 38 38 H 1.09003 * 113.66247 * 215.29250 * 24 23 5 39 39 H 1.08994 * 113.66432 * 346.34307 * 24 23 5 40 40 H 1.09001 * 113.57848 * 270.13361 * 25 24 23 41 41 H 1.08995 * 113.64830 * 139.34487 * 25 24 23 42 42 H 1.09005 * 113.66383 * 13.65514 * 26 23 5 43 43 H 1.08999 * 113.66291 * 144.70467 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0708 -0.2476 -0.4024 7 6 4.2629 -1.5987 1.3450 8 6 4.2285 -3.0426 0.8122 9 1 3.3029 -3.5711 1.0404 10 7 5.4283 -3.8224 1.1444 11 6 5.1440 -4.8008 2.2027 12 6 6.3952 -5.5804 2.5153 13 8 7.4228 -5.3439 1.9159 14 7 6.3726 -6.5397 3.4618 15 6 7.5110 -7.2486 3.7465 16 1 8.4258 -7.0386 3.2122 17 6 7.4876 -8.2380 4.7219 18 7 6.3744 -8.4939 5.3717 19 14 9.0385 -9.2043 5.1094 20 1 10.1480 -8.7271 4.2455 21 1 9.4019 -9.0060 6.5356 22 1 8.7987 -10.6478 4.8559 23 6 4.2594 -2.4369 -0.5914 24 6 3.6083 -3.1520 -1.7758 25 6 4.6699 -2.4714 -2.6589 26 6 5.5549 -2.3855 -1.4021 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6959 -2.0072 0.0005 31 1 3.6071 -1.4335 2.1997 32 1 5.2713 -1.2168 1.5047 33 1 6.1917 -3.2172 1.4071 34 1 4.8070 -4.2794 3.0985 35 1 4.3649 -5.4846 1.8656 36 1 5.5509 -6.7285 3.9413 37 1 6.3582 -9.1843 6.0528 38 1 3.7021 -4.2373 -1.7368 39 1 2.5905 -2.8206 -1.9812 40 1 4.3604 -1.4988 -3.0414 41 1 5.0756 -3.1212 -3.4342 42 1 6.0921 -1.4417 -1.3090 43 1 6.1958 -3.2553 -1.2580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202278326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:23 Heat of formation + Delta-G solvation = -31.579721 kcal Electronic energy + Delta-G solvation = -23783.093041 eV Core-core repulsion = 20250.404380 eV Total energy + Delta-G solvation = -3532.688661 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18463 -39.18955 -38.16225 -35.67142 -34.57262 -33.82454 -32.24679 -31.19951 -29.77874 -26.80088 -25.84937 -24.71355 -24.38576 -22.91993 -21.33097 -20.50813 -19.33256 -18.46347 -17.88014 -17.08776 -16.35157 -16.08665 -15.57347 -15.42590 -15.19504 -14.70229 -14.53463 -14.34030 -13.93408 -13.60468 -13.21417 -13.03901 -12.96902 -12.81655 -12.36110 -12.29511 -12.17819 -11.91953 -11.78506 -11.59211 -11.45132 -11.10116 -11.03205 -10.46551 -10.35101 -10.24075 -10.18605 -10.09077 -10.04996 -9.52726 -9.20328 -8.43530 -8.00682 -7.94545 -6.42722 -3.83385 2.37447 2.90003 3.15629 3.26296 3.33605 3.90316 4.07997 4.24654 4.28785 4.46869 4.51780 4.64056 4.72205 4.83769 4.85454 4.86529 5.07870 5.16671 5.26557 5.33714 5.38316 5.43126 5.51041 5.61808 5.75641 5.77825 5.80503 5.82686 5.89610 5.91833 5.98199 6.07003 6.25281 6.35918 6.38334 6.51994 7.25526 7.27173 7.54609 7.67097 7.97451 8.05897 8.60447 9.17283 9.53691 10.05043 10.75132 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.002886 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.158612 B = 9699.176374 C =10289.618289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.708 5.708 5 C 0.144 3.856 6 H 0.103 0.897 7 C -0.179 4.179 8 C 0.082 3.918 9 H 0.094 0.906 10 N -0.652 5.652 11 C 0.050 3.950 12 C 0.441 3.559 13 O -0.583 6.583 14 N -0.565 5.565 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.102 4.102 24 C -0.121 4.121 25 C -0.142 4.142 26 C -0.101 4.101 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.402 0.598 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.352 0.648 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.249 12.259 -10.607 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.299 3.701 3 O -0.426 6.426 4 N -0.359 5.359 5 C 0.038 3.962 6 H 0.121 0.879 7 C -0.220 4.220 8 C -0.029 4.029 9 H 0.112 0.888 10 N -0.282 5.282 11 C -0.082 4.082 12 C 0.226 3.774 13 O -0.467 6.467 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.104 4.104 24 C -0.159 4.159 25 C -0.179 4.179 26 C -0.138 4.138 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.236 0.764 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.173 0.827 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.232 12.567 -11.355 20.892 hybrid contribution -0.207 -0.582 1.484 1.607 sum -12.439 11.985 -9.871 19.895 Atomic orbital electron populations 1.21852 0.91641 1.04270 1.05316 1.20829 0.90560 0.83469 0.75236 1.90730 1.70734 1.31427 1.49708 1.45763 1.06564 1.08727 1.74874 1.21496 0.79716 0.98482 0.96551 0.87942 1.24209 1.01917 0.98436 0.97403 1.22880 0.94208 0.90949 0.94862 0.88781 1.59925 1.06283 1.18978 1.43045 1.21708 0.97866 0.95355 0.93305 1.19838 0.89727 0.84144 0.83662 1.90524 1.33263 1.69650 1.53275 1.41876 1.12893 1.31852 1.33508 1.19751 0.90759 1.13791 1.18464 0.87881 1.25262 0.98458 0.97844 0.96428 1.69618 1.26390 1.33191 1.25176 0.85808 0.81305 0.79059 0.78222 1.19210 1.20779 1.20740 1.23020 0.98852 0.94780 0.93757 1.22636 0.97714 1.00270 0.95272 1.22830 0.97691 1.00451 0.96947 1.22499 0.94734 1.03094 0.93515 0.90529 0.88714 0.88739 0.76358 0.91186 0.88911 0.82700 0.93928 0.89759 0.77505 0.91941 0.89363 0.92033 0.90876 0.91514 0.91877 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.39 36.01 0.37 -0.58 16 2 C 0.51 5.04 7.94 -10.99 -0.09 4.95 16 3 O -0.55 -7.99 16.70 5.55 0.09 -7.89 16 4 N -0.71 -6.05 4.80 -53.27 -0.26 -6.30 16 5 C 0.14 1.49 4.13 -67.38 -0.28 1.21 16 6 H 0.10 1.25 7.47 -51.93 -0.39 0.86 16 7 C -0.18 -1.96 7.52 -25.65 -0.19 -2.16 16 8 C 0.08 0.94 3.95 -67.26 -0.27 0.68 16 9 H 0.09 1.00 7.88 -51.93 -0.41 0.59 16 10 N -0.65 -9.88 5.44 -107.51 -0.59 -10.46 16 11 C 0.05 0.85 6.02 -4.97 -0.03 0.82 16 12 C 0.44 10.23 7.82 -10.98 -0.09 10.14 16 13 O -0.58 -15.60 15.78 5.55 0.09 -15.52 16 14 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 15 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 16 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 19 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.10 -1.06 0.92 -154.71 -0.14 -1.20 16 24 C -0.12 -1.16 7.62 -26.28 -0.20 -1.36 16 25 C -0.14 -1.39 8.08 -25.75 -0.21 -1.59 16 26 C -0.10 -1.13 7.44 -26.28 -0.20 -1.32 16 27 H 0.08 0.25 7.91 -51.93 -0.41 -0.16 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.40 2.50 8.26 -40.82 -0.34 2.16 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.06 7.82 -51.93 -0.41 0.65 16 33 H 0.35 5.68 7.91 -39.29 -0.31 5.37 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.32 8.13 -51.93 -0.42 0.89 16 36 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.50 7.58 -51.93 -0.39 0.11 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.11 1.40 7.77 -51.93 -0.40 1.00 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -32.93 358.18 -7.87 -40.79 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -6.70 Total: 14.31 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.55 Total: 1.66 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.17 Total: -54.72 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.18 Total: -23.41 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.93 -7.87 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202278326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.215 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds