Wall clock time and date at job start Tue Mar 31 2020 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00258 * 2 1 4 4 N 1.34772 * 120.00220 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00529 * 179.97438 * 4 2 1 6 6 H 1.09004 * 112.94993 * 336.41648 * 5 4 2 7 7 C 1.54144 * 113.57861 * 107.81970 * 5 4 2 8 8 C 1.53944 * 87.22659 * 89.82073 * 7 5 4 9 9 H 1.09000 * 113.66548 * 270.13711 * 8 7 5 10 10 N 1.46906 * 113.66224 * 139.17350 * 8 7 5 11 11 C 1.46902 * 110.99573 * 106.01423 * 10 8 7 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 8 13 13 O 1.21294 * 120.00016 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99715 * 179.97438 * 12 11 10 15 15 C 1.37092 * 119.99635 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00232 * 359.97438 * 15 14 12 17 17 C 1.38952 * 119.99714 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47386 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46827 * 120.00111 * 19 17 15 22 22 H 1.48504 * 109.47265 * 239.99442 * 19 17 15 23 23 C 1.52908 * 113.66637 * 205.00523 * 5 4 2 24 24 C 1.52907 * 121.13634 * 36.14883 * 23 5 4 25 25 C 1.53951 * 86.78474 * 100.81930 * 24 23 5 26 26 C 1.52910 * 121.13705 * 144.70842 * 23 5 4 27 27 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47079 * 300.00402 * 1 2 3 29 29 H 1.09002 * 109.47200 * 60.00164 * 1 2 3 30 30 H 0.97005 * 120.00032 * 0.02562 * 4 2 1 31 31 H 1.09000 * 113.63748 * 335.23778 * 7 5 4 32 32 H 1.09004 * 113.58470 * 204.39312 * 7 5 4 33 33 H 1.00896 * 111.00309 * 342.05835 * 10 8 7 34 34 H 1.08990 * 109.47358 * 299.99539 * 11 10 8 35 35 H 1.09004 * 109.47457 * 60.00221 * 11 10 8 36 36 H 0.96993 * 119.99587 * 0.02562 * 14 12 11 37 37 H 0.96997 * 119.99955 * 180.02562 * 18 17 15 38 38 H 1.09003 * 113.66247 * 215.29250 * 24 23 5 39 39 H 1.08994 * 113.66432 * 346.34307 * 24 23 5 40 40 H 1.09001 * 113.57848 * 270.13361 * 25 24 23 41 41 H 1.08995 * 113.64830 * 139.34487 * 25 24 23 42 42 H 1.09005 * 113.66383 * 13.65514 * 26 23 5 43 43 H 1.08999 * 113.66291 * 144.70467 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0708 -0.2476 -0.4024 7 6 4.2629 -1.5987 1.3450 8 6 4.2285 -3.0426 0.8122 9 1 3.3029 -3.5711 1.0404 10 7 5.4283 -3.8224 1.1444 11 6 5.1440 -4.8008 2.2027 12 6 6.3952 -5.5804 2.5153 13 8 7.4228 -5.3439 1.9159 14 7 6.3726 -6.5397 3.4618 15 6 7.5110 -7.2486 3.7465 16 1 8.4258 -7.0386 3.2122 17 6 7.4876 -8.2380 4.7219 18 7 6.3744 -8.4939 5.3717 19 14 9.0385 -9.2043 5.1094 20 1 10.1480 -8.7271 4.2455 21 1 9.4019 -9.0060 6.5356 22 1 8.7987 -10.6478 4.8559 23 6 4.2594 -2.4369 -0.5914 24 6 3.6083 -3.1520 -1.7758 25 6 4.6699 -2.4714 -2.6589 26 6 5.5549 -2.3855 -1.4021 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6959 -2.0072 0.0005 31 1 3.6071 -1.4335 2.1997 32 1 5.2713 -1.2168 1.5047 33 1 6.1917 -3.2172 1.4071 34 1 4.8070 -4.2794 3.0985 35 1 4.3649 -5.4846 1.8656 36 1 5.5509 -6.7285 3.9413 37 1 6.3582 -9.1843 6.0528 38 1 3.7021 -4.2373 -1.7368 39 1 2.5905 -2.8206 -1.9812 40 1 4.3604 -1.4988 -3.0414 41 1 5.0756 -3.1212 -3.4342 42 1 6.0921 -1.4417 -1.3090 43 1 6.1958 -3.2553 -1.2580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202278326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:21 Heat of formation + Delta-G solvation = -56.236294 kcal Electronic energy + Delta-G solvation = -23784.162230 eV Core-core repulsion = 20250.404380 eV Total energy + Delta-G solvation = -3533.757850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.06676 -40.17000 -39.87883 -36.69777 -36.00742 -35.38247 -33.38489 -33.08368 -30.39447 -28.32624 -26.70604 -26.15965 -25.48957 -24.02722 -22.16046 -21.33764 -21.09700 -19.93143 -19.34912 -17.91387 -17.73538 -16.95757 -16.93144 -16.48125 -16.29176 -16.14928 -15.88035 -15.63719 -15.44910 -14.79635 -14.35023 -14.24999 -13.83626 -13.60877 -13.50924 -13.39467 -13.16491 -13.08262 -12.97257 -12.83552 -12.78781 -12.56513 -12.39881 -12.11943 -11.94360 -11.51151 -11.30268 -11.07487 -11.01019 -10.90643 -10.29197 -10.02569 -10.00647 -9.17954 -8.46691 -5.94999 1.36384 1.41813 1.55758 1.62893 2.06576 2.18636 2.29269 2.93673 3.20870 3.37710 3.48294 3.60987 3.72227 3.88080 3.95454 4.00450 4.02376 4.32900 4.42279 4.48158 4.52451 4.59260 4.60170 4.62133 4.68907 4.78313 4.87870 4.91655 4.99974 5.03732 5.11358 5.13681 5.18949 5.41473 5.50000 5.53709 5.64719 5.93892 6.17495 6.41203 6.59358 6.61043 7.13486 7.27345 7.57443 8.12951 8.70938 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.002886 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.158612 B = 9699.176374 C =10289.618289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.603 6.603 4 N -0.696 5.696 5 C 0.151 3.849 6 H 0.083 0.917 7 C -0.176 4.176 8 C 0.084 3.916 9 H 0.114 0.886 10 N -0.662 5.662 11 C 0.066 3.934 12 C 0.438 3.562 13 O -0.623 6.623 14 N -0.574 5.574 15 C -0.332 4.332 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.991 3.009 20 H -0.274 1.274 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.094 4.094 24 C -0.113 4.113 25 C -0.137 4.137 26 C -0.109 4.109 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.417 0.583 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.344 0.656 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.338 11.831 -10.703 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.296 3.704 3 O -0.484 6.484 4 N -0.348 5.348 5 C 0.044 3.956 6 H 0.101 0.899 7 C -0.217 4.217 8 C -0.026 4.026 9 H 0.132 0.868 10 N -0.292 5.292 11 C -0.066 4.066 12 C 0.225 3.775 13 O -0.510 6.510 14 N -0.212 5.212 15 C -0.462 4.462 16 H 0.095 0.905 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.815 3.185 20 H -0.199 1.199 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.096 4.096 24 C -0.151 4.151 25 C -0.174 4.174 26 C -0.147 4.147 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.254 0.746 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.379 12.108 -11.450 22.010 hybrid contribution 0.455 -0.404 1.480 1.600 sum -13.923 11.704 -9.970 20.742 Atomic orbital electron populations 1.21880 0.87933 1.06487 1.05950 1.21651 0.92282 0.82681 0.73771 1.90712 1.72128 1.33329 1.52234 1.45685 1.05660 1.09377 1.74028 1.21265 0.80941 0.97456 0.95921 0.89865 1.24153 1.01654 0.98023 0.97839 1.23012 0.93386 0.90756 0.95494 0.86837 1.59942 1.07611 1.19354 1.42320 1.21577 0.94648 0.95529 0.94890 1.20948 0.91243 0.83297 0.81970 1.90496 1.35574 1.70578 1.54337 1.41941 1.12401 1.32474 1.34344 1.19680 0.91084 1.15672 1.19724 0.90464 1.26013 1.01450 0.98099 0.95695 1.69671 1.27685 1.33516 1.25263 0.84897 0.77517 0.77927 0.78160 1.19893 1.19635 1.19560 1.22920 0.98508 0.94665 0.93523 1.22598 0.98610 0.99760 0.94111 1.22810 0.97297 1.00907 0.96396 1.22451 0.95083 1.01917 0.95218 0.87544 0.88159 0.87891 0.74565 0.90846 0.89824 0.83638 0.91821 0.87576 0.76972 0.91321 0.89904 0.90010 0.90241 0.91305 0.92122 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 10.39 71.24 0.74 -0.58 16 2 C 0.51 9.07 7.94 87.66 0.70 9.76 16 3 O -0.60 -17.35 16.70 -3.04 -0.05 -17.40 16 4 N -0.70 -10.24 4.80 -440.85 -2.12 -12.36 16 5 C 0.15 2.96 4.13 45.35 0.19 3.14 16 6 H 0.08 2.02 7.47 -2.39 -0.02 2.00 16 7 C -0.18 -3.67 7.52 31.30 0.24 -3.44 16 8 C 0.08 1.77 3.95 45.20 0.18 1.95 16 9 H 0.11 2.01 7.88 -2.39 -0.02 1.99 16 10 N -0.66 -19.58 5.44 -494.06 -2.69 -22.27 16 11 C 0.07 2.14 6.02 85.56 0.52 2.66 16 12 C 0.44 20.47 7.82 87.66 0.69 21.16 16 13 O -0.62 -34.27 15.78 -3.07 -0.05 -34.32 16 14 N -0.57 -29.16 5.29 -306.97 -1.62 -30.78 16 15 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 16 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 17 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 18 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 19 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 C -0.09 -1.83 0.92 -52.31 -0.05 -1.88 16 24 C -0.11 -1.91 7.62 30.88 0.24 -1.67 16 25 C -0.14 -2.51 8.08 31.23 0.25 -2.26 16 26 C -0.11 -2.43 7.44 30.89 0.23 -2.20 16 27 H 0.11 0.22 7.91 -2.39 -0.02 0.20 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.42 3.67 8.26 -92.70 -0.77 2.90 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.91 7.82 -2.39 -0.02 1.89 16 33 H 0.34 11.20 7.91 -89.70 -0.71 10.49 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.11 3.04 8.13 -2.38 -0.02 3.02 16 36 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 37 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.06 7.58 -2.39 -0.02 1.04 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.08 2.25 7.77 -2.39 -0.02 2.23 16 Total: -1.00 -72.97 358.18 -0.19 -73.16 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -1.16 Total: 39.67 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 5.19 Total: 8.42 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -6.15 Total: -114.44 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.10 Total: -51.72 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.97 -0.19 -73.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202278326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.928 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds