Wall clock time and date at job start Tue Mar 31 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21281 * 119.99549 * 2 1 4 4 N 1.34772 * 120.00028 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99925 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47165 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00041 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99927 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00030 * 180.02562 * 8 6 5 10 10 H 1.09000 * 112.88330 * 336.34798 * 9 8 6 11 11 C 1.53949 * 113.66194 * 107.81453 * 9 8 6 12 12 C 1.53950 * 87.29535 * 139.20730 * 11 9 8 13 13 H 1.09008 * 113.74633 * 220.78601 * 12 11 9 14 14 N 1.46499 * 113.66341 * 89.73825 * 12 11 9 15 15 C 1.36939 * 119.99933 * 108.08949 * 14 12 11 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 12 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 12 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47144 * 90.00258 * 19 17 15 21 21 H 1.48500 * 109.47140 * 210.00775 * 19 17 15 22 22 H 1.48502 * 109.46967 * 330.00206 * 19 17 15 23 23 C 1.52909 * 86.78227 * 335.26395 * 12 11 9 24 24 C 1.52907 * 121.14177 * 259.18037 * 23 12 11 25 25 C 1.53951 * 86.78403 * 209.38090 * 24 23 12 26 26 C 1.52906 * 121.13749 * 150.61521 * 23 12 11 27 27 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47256 * 300.00016 * 1 2 3 29 29 H 1.08998 * 109.47278 * 60.00700 * 1 2 3 30 30 H 0.97002 * 119.99998 * 0.02562 * 4 2 1 31 31 H 1.09002 * 109.46744 * 60.00476 * 5 4 2 32 32 H 1.09000 * 109.47186 * 300.00517 * 5 4 2 33 33 H 0.96999 * 120.00435 * 0.02562 * 8 6 5 34 34 H 1.09002 * 113.58121 * 24.60423 * 11 9 8 35 35 H 1.08996 * 113.57817 * 253.80635 * 11 9 8 36 36 H 0.97001 * 119.99790 * 287.80923 * 14 12 11 37 37 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 38 38 H 1.08997 * 113.66251 * 323.85149 * 24 23 12 39 39 H 1.09002 * 113.66158 * 94.90664 * 24 23 12 40 40 H 1.09004 * 113.57480 * 270.12852 * 25 24 23 41 41 H 1.09001 * 113.64943 * 139.34808 * 25 24 23 42 42 H 1.09002 * 113.66647 * 265.09510 * 26 23 12 43 43 H 1.09003 * 113.66258 * 36.05869 * 26 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1483 -2.5879 0.0001 7 8 3.3602 -3.5098 0.0001 8 7 5.4733 -2.8341 0.0001 9 6 5.9618 -4.2154 -0.0003 10 1 5.2358 -4.9218 0.4022 11 6 6.5746 -4.6536 -1.3429 12 6 7.6681 -5.3673 -0.5274 13 1 8.6685 -5.2609 -0.9471 14 7 7.3375 -6.7533 -0.1871 15 6 7.9892 -7.7850 -0.8085 16 1 8.7438 -7.5769 -1.5526 17 6 7.6800 -9.0983 -0.4819 18 7 6.7601 -9.3518 0.4248 19 14 8.5685 -10.5056 -1.3300 20 1 9.7849 -10.8611 -0.5560 21 1 7.6686 -11.6843 -1.4070 22 1 8.9582 -10.0901 -2.7014 23 6 7.3630 -4.3710 0.5917 24 6 8.2584 -3.1555 0.8342 25 6 7.8433 -3.2534 2.3134 26 6 7.5635 -4.7460 2.0605 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6959 -2.0072 0.0005 31 1 4.0095 -0.6527 0.8895 32 1 4.0089 -0.6538 -0.8905 33 1 6.1037 -2.0969 0.0005 34 1 6.9494 -3.8241 -1.9426 35 1 5.9399 -5.3341 -1.9104 36 1 6.6598 -6.9402 0.4813 37 1 6.5439 -10.2695 0.6527 38 1 9.3170 -3.3509 0.6631 39 1 7.9083 -2.2489 0.3406 40 1 6.9500 -2.6771 2.5546 41 1 8.6624 -3.0752 3.0101 42 1 6.6584 -5.1099 2.5466 43 1 8.4259 -5.3897 2.2338 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202342272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:57 Heat of formation + Delta-G solvation = -44.601778 kcal Electronic energy + Delta-G solvation = -23953.785452 eV Core-core repulsion = 20420.532113 eV Total energy + Delta-G solvation = -3533.253339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.02134 -40.88515 -39.83402 -36.56862 -35.69745 -35.41782 -34.15265 -31.77268 -31.15835 -28.28606 -26.75908 -26.13087 -25.36247 -24.32970 -21.71839 -21.61459 -21.47833 -19.69579 -19.19570 -18.31751 -17.68628 -17.13850 -17.04306 -16.84222 -16.67276 -16.20630 -15.79159 -15.77676 -15.21573 -14.79550 -14.42806 -14.16119 -13.97851 -13.90751 -13.36486 -13.31717 -13.27404 -13.12916 -12.96414 -12.90447 -12.79317 -12.55316 -12.17363 -11.99080 -11.78427 -11.37930 -11.31482 -11.10307 -11.01617 -10.84916 -10.65641 -10.28111 -9.96188 -8.98798 -7.95072 -5.23746 1.44694 1.46799 1.48361 1.56634 1.59923 1.79890 2.47680 2.54819 3.36577 3.40958 3.49048 3.57254 3.78571 3.91865 3.95062 4.04882 4.20778 4.24790 4.30445 4.33671 4.51881 4.56930 4.63607 4.67744 4.75923 4.86474 4.96347 5.02702 5.05705 5.10276 5.13537 5.22601 5.25337 5.29906 5.36514 5.52419 5.57160 5.73094 6.26996 6.45232 6.47780 7.13098 7.15374 7.32476 8.09440 8.31163 9.28255 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021366 B = 0.003258 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.174696 B = 8591.796345 C = 9365.125407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.510 3.490 3 O -0.594 6.594 4 N -0.718 5.718 5 C 0.103 3.897 6 C 0.507 3.493 7 O -0.579 6.579 8 N -0.693 5.693 9 C 0.163 3.837 10 H 0.075 0.925 11 C -0.171 4.171 12 C 0.165 3.835 13 H 0.072 0.928 14 N -0.716 5.716 15 C -0.240 4.240 16 H 0.080 0.920 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.973 3.027 20 H -0.286 1.286 21 H -0.299 1.299 22 H -0.269 1.269 23 C -0.119 4.119 24 C -0.094 4.094 25 C -0.124 4.124 26 C -0.128 4.128 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.415 0.585 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.418 0.582 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 21.033 0.560 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.475 6.475 4 N -0.373 5.373 5 C -0.024 4.024 6 C 0.294 3.706 7 O -0.459 6.459 8 N -0.345 5.345 9 C 0.058 3.942 10 H 0.093 0.907 11 C -0.213 4.213 12 C 0.054 3.946 13 H 0.090 0.910 14 N -0.352 5.352 15 C -0.371 4.371 16 H 0.097 0.903 17 C -0.268 4.268 18 N -0.621 5.621 19 Si 0.802 3.198 20 H -0.213 1.213 21 H -0.226 1.226 22 H -0.193 1.193 23 C -0.121 4.121 24 C -0.132 4.132 25 C -0.161 4.161 26 C -0.166 4.166 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.254 0.746 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.257 0.743 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.770 20.993 0.440 21.533 hybrid contribution 0.026 -1.757 -0.085 1.759 sum -4.743 19.236 0.355 19.815 Atomic orbital electron populations 1.21879 0.88077 1.06078 1.06343 1.21519 0.92274 0.82188 0.74084 1.90703 1.71902 1.32662 1.52228 1.46005 1.06241 1.10223 1.74862 1.21116 0.82659 0.92484 1.06149 1.20964 0.83006 0.91481 0.75184 1.90725 1.56210 1.47445 1.51526 1.45757 1.06462 1.08811 1.73453 1.21787 0.92951 0.82647 0.96804 0.90728 1.24177 0.99922 1.00525 0.96651 1.21093 0.96094 0.83137 0.94248 0.90996 1.42236 1.45575 1.00221 1.47213 1.19674 1.14972 0.86493 1.15996 0.90260 1.25568 1.00655 0.99922 1.00703 1.69836 1.36396 1.18925 1.36900 0.85147 0.77331 0.78875 0.78455 1.21313 1.22597 1.19344 1.23423 0.94977 0.98597 0.95108 1.22539 0.99235 0.95476 0.95917 1.22805 1.01835 0.94486 0.96999 1.22568 1.00602 0.97860 0.95522 0.88572 0.87508 0.87525 0.74603 0.86858 0.86952 0.74304 0.87734 0.94281 0.79618 0.94127 0.88756 0.88887 0.89616 0.90257 0.93976 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.39 71.24 0.74 -0.96 16 2 C 0.51 9.67 7.94 87.66 0.70 10.37 16 3 O -0.59 -15.85 17.10 -3.03 -0.05 -15.91 16 4 N -0.72 -13.33 5.53 -466.79 -2.58 -15.91 16 5 C 0.10 1.83 6.15 85.63 0.53 2.36 16 6 C 0.51 12.21 7.90 87.66 0.69 12.90 16 7 O -0.58 -19.35 15.27 -3.05 -0.05 -19.39 16 8 N -0.69 -15.07 5.28 -441.14 -2.33 -17.40 16 9 C 0.16 5.03 4.04 45.28 0.18 5.21 16 10 H 0.07 2.99 7.46 -2.39 -0.02 2.98 16 11 C -0.17 -5.66 7.68 31.23 0.24 -5.42 16 12 C 0.17 6.18 4.36 45.28 0.20 6.38 16 13 H 0.07 2.62 8.10 -2.38 -0.02 2.60 16 14 N -0.72 -35.64 5.09 -321.55 -1.64 -37.28 16 15 C -0.24 -13.16 9.97 84.03 0.84 -12.32 16 16 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 17 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 18 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 19 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 C -0.12 -3.43 0.92 -52.31 -0.05 -3.48 16 24 C -0.09 -1.83 7.47 30.88 0.23 -1.60 16 25 C -0.12 -2.55 8.08 31.23 0.25 -2.30 16 26 C -0.13 -3.92 7.49 30.88 0.23 -3.68 16 27 H 0.10 0.66 7.91 -2.39 -0.02 0.64 16 28 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.42 7.66 7.27 -92.71 -0.67 6.99 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.42 5.96 6.72 -92.71 -0.62 5.34 16 34 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.37 20.41 7.81 -92.71 -0.72 19.69 16 37 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 1.23 6.42 -2.39 -0.02 1.21 16 40 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -75.70 357.49 -0.07 -75.77 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -0.98 Total: 38.08 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 5.25 Total: 3.53 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -6.26 Total: -130.33 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.10 Total: -35.30 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -75.70 -0.07 -75.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202342272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.169 kcal (2) G-P(sol) polarization free energy of solvation -75.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds