Wall clock time and date at job start Tue Mar 31 2020 03:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00292 * 2 1 4 4 O 1.21282 * 119.99605 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00143 * 179.97438 * 3 2 1 6 6 C 1.50692 * 109.47244 * 179.97438 * 5 3 2 7 7 O 1.21286 * 119.99978 * 359.97438 * 6 5 3 8 8 N 1.34780 * 120.00439 * 179.97438 * 6 5 3 9 9 C 1.46498 * 120.00320 * 180.02562 * 8 6 5 10 10 H 1.08997 * 112.94779 * 333.09957 * 9 8 6 11 11 C 1.53957 * 113.66181 * 104.50574 * 9 8 6 12 12 C 1.53945 * 87.29527 * 139.20819 * 11 9 8 13 13 H 1.09002 * 113.66835 * 89.73491 * 12 11 9 14 14 N 1.46497 * 113.66186 * 220.79622 * 12 11 9 15 15 C 1.36945 * 119.99792 * 255.49147 * 14 12 11 16 16 H 1.07996 * 119.99695 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99980 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00174 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99754 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46888 * 60.00721 * 19 17 15 21 21 H 1.48502 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47557 * 300.00287 * 19 17 15 23 23 C 1.52906 * 113.66132 * 201.68754 * 9 8 6 24 24 C 1.52911 * 121.13708 * 94.91122 * 23 9 8 25 25 C 1.53953 * 86.78498 * 209.37459 * 24 23 9 26 26 C 1.52908 * 121.14322 * 346.35006 * 23 9 8 27 27 H 1.09000 * 109.47059 * 60.00278 * 1 2 3 28 28 H 1.09001 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47302 * 300.00202 * 1 2 3 30 30 H 0.97000 * 119.99694 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47363 * 59.99855 * 5 3 2 32 32 H 1.09000 * 109.47147 * 299.99688 * 5 3 2 33 33 H 0.97004 * 119.99613 * 359.97438 * 8 6 5 34 34 H 1.09004 * 113.57788 * 253.80949 * 11 9 8 35 35 H 1.08996 * 113.58263 * 24.59858 * 11 9 8 36 36 H 0.96999 * 120.00524 * 75.48924 * 14 12 11 37 37 H 0.97003 * 120.00231 * 179.97438 * 18 17 15 38 38 H 1.09001 * 113.66341 * 323.84544 * 24 23 9 39 39 H 1.08996 * 113.66624 * 94.90194 * 24 23 9 40 40 H 1.09002 * 113.58246 * 270.13531 * 25 24 23 41 41 H 1.08997 * 113.65416 * 139.34277 * 25 24 23 42 42 H 1.09003 * 113.66175 * 265.09643 * 26 23 9 43 43 H 1.09004 * 113.66268 * 36.05302 * 26 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1482 2.5878 -0.0002 7 8 3.3601 3.5097 -0.0016 8 7 5.4733 2.8342 0.0007 9 6 5.9617 4.2154 0.0005 10 1 5.2598 4.9142 -0.4544 11 6 6.4997 4.6807 1.3659 12 6 7.6369 5.3786 0.5981 13 1 7.4059 6.4044 0.3110 14 7 8.9472 5.2462 1.2397 15 6 9.4904 6.3080 1.9127 16 1 8.9529 7.2430 1.9701 17 6 10.7317 6.1825 2.5211 18 7 11.3869 5.0433 2.4508 19 14 11.4729 7.6312 3.4385 20 1 10.5688 8.0300 4.5470 21 1 12.7946 7.2422 3.9927 22 1 11.6448 8.7729 2.5048 23 6 7.3936 4.3599 -0.5160 24 6 7.6754 4.7055 -1.9787 25 6 8.9882 3.9168 -1.8219 26 6 8.3005 3.1403 -0.6842 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9499 -0.8401 0.0004 31 1 4.0096 0.6531 -0.8891 32 1 4.0088 0.6535 0.8908 33 1 6.1037 2.0968 0.0022 34 1 5.8349 5.3720 1.8839 35 1 6.8402 3.8636 2.0019 36 1 9.4301 4.4066 1.1879 37 1 12.2546 4.9557 2.8757 38 1 6.9735 4.2519 -2.6785 39 1 7.8235 5.7707 -2.1558 40 1 9.8268 4.5279 -1.4879 41 1 9.2329 3.2988 -2.6857 42 1 8.9480 2.9551 0.1729 43 1 7.7740 2.2464 -1.0186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202805970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:48 Heat of formation + Delta-G solvation = -11.927344 kcal Electronic energy + Delta-G solvation = -24029.197853 eV Core-core repulsion = 20497.361383 eV Total energy + Delta-G solvation = -3531.836470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67088 -39.93285 -38.27793 -34.88725 -34.66141 -34.01204 -32.54636 -30.97136 -29.67944 -26.71414 -25.49481 -24.50032 -24.13157 -22.40279 -20.93178 -20.42261 -20.10697 -17.98686 -17.52605 -17.38386 -16.68352 -16.09511 -15.86241 -15.69046 -15.02554 -14.63501 -14.53241 -14.40316 -13.70817 -13.51448 -13.28683 -12.96405 -12.70834 -12.55849 -12.45940 -12.14700 -12.01611 -11.74998 -11.48727 -11.20994 -10.89584 -10.77697 -10.69060 -10.23114 -10.19644 -10.03274 -9.82691 -9.79133 -9.45964 -9.35555 -9.28994 -8.84164 -8.57252 -6.96691 -5.79978 -3.07988 2.48769 2.76042 2.82136 3.43564 3.47896 3.48303 3.51119 4.38594 4.57760 4.74514 4.81926 4.91805 4.95463 4.97756 5.06028 5.12591 5.22896 5.25477 5.29050 5.47945 5.51460 5.70135 5.90511 5.94784 5.99227 6.01101 6.07644 6.13024 6.26271 6.33434 6.42240 6.52621 6.64627 6.67932 6.86476 6.95133 7.10770 7.20271 7.69705 7.71045 8.07847 8.39240 8.45170 9.50880 10.07622 10.42790 11.42396 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.003117 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.471965 B = 8979.621441 C = 9432.282526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.743 5.743 3 C 0.510 3.490 4 O -0.490 6.490 5 C -0.167 4.167 6 C 0.509 3.491 7 O -0.501 6.501 8 N -0.715 5.715 9 C 0.134 3.866 10 H 0.108 0.892 11 C -0.174 4.174 12 C 0.192 3.808 13 H 0.080 0.920 14 N -0.707 5.707 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.130 4.130 26 C -0.116 4.116 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.400 0.600 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.397 0.603 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 -14.469 -8.214 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.398 5.398 3 C 0.294 3.706 4 O -0.361 6.361 5 C -0.210 4.210 6 C 0.292 3.708 7 O -0.374 6.374 8 N -0.367 5.367 9 C 0.029 3.971 10 H 0.126 0.874 11 C -0.216 4.216 12 C 0.079 3.921 13 H 0.098 0.902 14 N -0.346 5.346 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.120 4.120 24 C -0.164 4.164 25 C -0.168 4.168 26 C -0.154 4.154 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.233 0.767 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.232 0.768 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.222 0.778 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.285 -12.799 -8.120 21.526 hybrid contribution 1.148 -0.539 0.600 1.403 sum -14.137 -13.338 -7.520 20.840 Atomic orbital electron populations 1.21492 0.79605 1.01971 1.02397 1.45810 1.07712 1.08514 1.77759 1.20092 0.89334 0.83935 0.77269 1.90879 1.69411 1.30428 1.45394 1.21612 0.94588 0.98337 1.06499 1.19892 0.82875 0.90266 0.77727 1.90848 1.54528 1.45293 1.46748 1.45958 1.06155 1.09235 1.75321 1.22242 0.93959 0.82361 0.98559 0.87413 1.24269 0.99962 1.01224 0.96172 1.21062 0.86562 0.94977 0.89492 0.90245 1.42335 1.16401 1.14282 1.61547 1.19259 1.00074 0.92415 1.25549 0.91125 1.24726 0.97486 0.97138 1.01413 1.69637 1.15195 1.24131 1.49211 0.86272 0.78296 0.81907 0.79747 1.21253 1.21747 1.21251 1.23552 0.93600 0.98975 0.95887 1.22712 0.97433 1.00499 0.95760 1.22733 0.97559 0.98836 0.97638 1.22429 0.97962 0.95312 0.99708 0.92322 0.90780 0.92281 0.76725 0.86283 0.86154 0.76846 0.92186 0.90217 0.77778 0.93451 0.90997 0.91482 0.89158 0.92533 0.90285 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.70 59.85 0.64 1.24 16 2 N -0.74 -5.41 5.71 -67.08 -0.38 -5.79 16 3 C 0.51 5.87 7.82 -10.99 -0.09 5.79 16 4 O -0.49 -8.51 14.18 -18.96 -0.27 -8.78 16 5 C -0.17 -1.46 6.18 -29.04 -0.18 -1.64 16 6 C 0.51 7.10 7.82 -10.99 -0.09 7.02 16 7 O -0.50 -9.68 13.82 -18.96 -0.26 -9.94 16 8 N -0.71 -9.14 5.29 -53.37 -0.28 -9.42 16 9 C 0.13 2.07 4.08 -67.48 -0.28 1.80 16 10 H 0.11 1.82 7.55 -51.93 -0.39 1.43 16 11 C -0.17 -3.13 7.68 -25.75 -0.20 -3.33 16 12 C 0.19 3.73 4.35 -67.48 -0.29 3.44 16 13 H 0.08 1.58 8.12 -51.93 -0.42 1.16 16 14 N -0.71 -16.90 5.35 -52.99 -0.28 -17.19 16 15 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 19 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.12 -1.84 1.06 -154.71 -0.16 -2.01 16 24 C -0.13 -1.83 7.84 -26.28 -0.21 -2.04 16 25 C -0.13 -1.94 8.08 -25.75 -0.21 -2.14 16 26 C -0.12 -1.69 6.77 -26.28 -0.18 -1.87 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.40 1.41 8.83 -40.82 -0.36 1.05 16 31 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 4.04 6.93 -40.82 -0.28 3.76 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.39 9.64 5.86 -40.82 -0.24 9.40 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.34 6.42 -51.93 -0.33 1.01 16 43 H 0.07 0.81 6.96 -51.93 -0.36 0.45 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -36.03 352.53 -8.53 -44.57 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.59 Total: 11.62 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.48 Total: -0.86 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.22 Total: -59.06 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.53 Total: -18.72 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.03 -8.53 -44.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202805970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.639 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds