Wall clock time and date at job start Tue Mar 31 2020 03:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00292 * 2 1 4 4 O 1.21282 * 119.99605 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00143 * 179.97438 * 3 2 1 6 6 C 1.50692 * 109.47244 * 179.97438 * 5 3 2 7 7 O 1.21286 * 119.99978 * 359.97438 * 6 5 3 8 8 N 1.34780 * 120.00439 * 179.97438 * 6 5 3 9 9 C 1.46498 * 120.00320 * 180.02562 * 8 6 5 10 10 H 1.08997 * 112.94779 * 333.09957 * 9 8 6 11 11 C 1.53957 * 113.66181 * 104.50574 * 9 8 6 12 12 C 1.53945 * 87.29527 * 139.20819 * 11 9 8 13 13 H 1.09002 * 113.66835 * 89.73491 * 12 11 9 14 14 N 1.46497 * 113.66186 * 220.79622 * 12 11 9 15 15 C 1.36945 * 119.99792 * 255.49147 * 14 12 11 16 16 H 1.07996 * 119.99695 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99980 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00174 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99754 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46888 * 60.00721 * 19 17 15 21 21 H 1.48502 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47557 * 300.00287 * 19 17 15 23 23 C 1.52906 * 113.66132 * 201.68754 * 9 8 6 24 24 C 1.52911 * 121.13708 * 94.91122 * 23 9 8 25 25 C 1.53953 * 86.78498 * 209.37459 * 24 23 9 26 26 C 1.52908 * 121.14322 * 346.35006 * 23 9 8 27 27 H 1.09000 * 109.47059 * 60.00278 * 1 2 3 28 28 H 1.09001 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47302 * 300.00202 * 1 2 3 30 30 H 0.97000 * 119.99694 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47363 * 59.99855 * 5 3 2 32 32 H 1.09000 * 109.47147 * 299.99688 * 5 3 2 33 33 H 0.97004 * 119.99613 * 359.97438 * 8 6 5 34 34 H 1.09004 * 113.57788 * 253.80949 * 11 9 8 35 35 H 1.08996 * 113.58263 * 24.59858 * 11 9 8 36 36 H 0.96999 * 120.00524 * 75.48924 * 14 12 11 37 37 H 0.97003 * 120.00231 * 179.97438 * 18 17 15 38 38 H 1.09001 * 113.66341 * 323.84544 * 24 23 9 39 39 H 1.08996 * 113.66624 * 94.90194 * 24 23 9 40 40 H 1.09002 * 113.58246 * 270.13531 * 25 24 23 41 41 H 1.08997 * 113.65416 * 139.34277 * 25 24 23 42 42 H 1.09003 * 113.66175 * 265.09643 * 26 23 9 43 43 H 1.09004 * 113.66268 * 36.05302 * 26 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1482 2.5878 -0.0002 7 8 3.3601 3.5097 -0.0016 8 7 5.4733 2.8342 0.0007 9 6 5.9617 4.2154 0.0005 10 1 5.2598 4.9142 -0.4544 11 6 6.4997 4.6807 1.3659 12 6 7.6369 5.3786 0.5981 13 1 7.4059 6.4044 0.3110 14 7 8.9472 5.2462 1.2397 15 6 9.4904 6.3080 1.9127 16 1 8.9529 7.2430 1.9701 17 6 10.7317 6.1825 2.5211 18 7 11.3869 5.0433 2.4508 19 14 11.4729 7.6312 3.4385 20 1 10.5688 8.0300 4.5470 21 1 12.7946 7.2422 3.9927 22 1 11.6448 8.7729 2.5048 23 6 7.3936 4.3599 -0.5160 24 6 7.6754 4.7055 -1.9787 25 6 8.9882 3.9168 -1.8219 26 6 8.3005 3.1403 -0.6842 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9499 -0.8401 0.0004 31 1 4.0096 0.6531 -0.8891 32 1 4.0088 0.6535 0.8908 33 1 6.1037 2.0968 0.0022 34 1 5.8349 5.3720 1.8839 35 1 6.8402 3.8636 2.0019 36 1 9.4301 4.4066 1.1879 37 1 12.2546 4.9557 2.8757 38 1 6.9735 4.2519 -2.6785 39 1 7.8235 5.7707 -2.1558 40 1 9.8268 4.5279 -1.4879 41 1 9.2329 3.2988 -2.6857 42 1 8.9480 2.9551 0.1729 43 1 7.7740 2.2464 -1.0186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202805970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:46 Heat of formation + Delta-G solvation = -39.110288 kcal Electronic energy + Delta-G solvation = -24030.376593 eV Core-core repulsion = 20497.361383 eV Total energy + Delta-G solvation = -3533.015210 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.92030 -40.94914 -39.35828 -36.25181 -35.73673 -35.41540 -34.04750 -32.19000 -31.21000 -27.44179 -26.76801 -26.22208 -25.48863 -23.90017 -21.97207 -21.73295 -21.12178 -19.62998 -18.82349 -18.37719 -17.91960 -17.20483 -16.91667 -16.58797 -16.37172 -16.27111 -15.87604 -15.52756 -15.03507 -14.78393 -14.39507 -14.23436 -14.02187 -13.72945 -13.47483 -13.15853 -13.09580 -13.04017 -12.87228 -12.82033 -12.69135 -12.33194 -12.22103 -12.06073 -11.84366 -11.30227 -11.23827 -11.05875 -10.96672 -10.69451 -10.42929 -10.06327 -9.81312 -8.94118 -7.93763 -5.20289 1.47459 1.49180 1.55151 1.67049 1.78887 1.95705 2.55209 2.64571 3.37039 3.51330 3.58477 3.65775 3.79243 3.96216 4.03901 4.06490 4.15170 4.30285 4.42971 4.45143 4.52388 4.59509 4.64946 4.69664 4.77428 4.82342 4.88571 4.98179 5.04759 5.11365 5.16560 5.23911 5.40461 5.50311 5.51916 5.54725 5.66581 5.75088 6.29174 6.62018 6.70647 7.34069 7.36650 7.47535 8.12437 8.38341 9.28922 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.003117 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.471965 B = 8979.621441 C = 9432.282526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.723 5.723 3 C 0.501 3.499 4 O -0.561 6.561 5 C -0.154 4.154 6 C 0.503 3.497 7 O -0.560 6.560 8 N -0.701 5.701 9 C 0.152 3.848 10 H 0.095 0.905 11 C -0.170 4.170 12 C 0.172 3.828 13 H 0.068 0.932 14 N -0.715 5.715 15 C -0.244 4.244 16 H 0.070 0.930 17 C -0.069 4.069 18 N -0.965 5.965 19 Si 0.967 3.033 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.280 1.280 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.130 4.130 26 C -0.107 4.107 27 H 0.044 0.956 28 H 0.115 0.885 29 H 0.041 0.959 30 H 0.422 0.578 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.414 0.586 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.380 0.620 37 H 0.251 0.749 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.816 -17.172 -9.345 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.377 5.377 3 C 0.286 3.714 4 O -0.438 6.438 5 C -0.195 4.195 6 C 0.289 3.711 7 O -0.437 6.437 8 N -0.354 5.354 9 C 0.046 3.954 10 H 0.113 0.887 11 C -0.212 4.212 12 C 0.062 3.938 13 H 0.086 0.914 14 N -0.354 5.354 15 C -0.376 4.376 16 H 0.088 0.912 17 C -0.262 4.262 18 N -0.615 5.615 19 Si 0.796 3.204 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.206 1.206 23 C -0.110 4.110 24 C -0.156 4.156 25 C -0.167 4.167 26 C -0.145 4.145 27 H 0.062 0.938 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.252 0.748 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.215 0.785 37 H 0.060 0.940 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.788 -15.588 -9.270 24.045 hybrid contribution 1.206 0.273 0.938 1.552 sum -14.582 -15.314 -8.333 22.729 Atomic orbital electron populations 1.21608 0.79318 1.04121 1.00902 1.45672 1.08032 1.08443 1.75591 1.20673 0.90625 0.83881 0.76209 1.90866 1.70886 1.33056 1.48972 1.21654 0.92427 0.94984 1.10481 1.20813 0.82291 0.92034 0.75964 1.90844 1.55940 1.47681 1.49263 1.45773 1.06536 1.08358 1.74721 1.21782 0.93577 0.83977 0.96096 0.88709 1.24124 0.99138 1.00663 0.97313 1.21295 0.85052 0.95882 0.91607 0.91363 1.42403 1.17834 1.13268 1.61905 1.19597 1.00058 0.93118 1.24838 0.91234 1.25432 0.98213 0.99517 1.03037 1.69773 1.15334 1.25796 1.50603 0.85313 0.77195 0.79253 0.78603 1.20881 1.22038 1.20634 1.23303 0.93473 0.98577 0.95675 1.22728 0.97662 1.00215 0.94963 1.22640 0.96452 0.98859 0.98757 1.22486 0.97207 0.96166 0.98613 0.93761 0.86702 0.94000 0.74071 0.81609 0.82302 0.74812 0.93509 0.90830 0.78505 0.93999 0.88253 0.92526 0.92884 0.89644 0.92896 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.70 127.77 1.37 2.36 16 2 N -0.72 -8.38 5.71 -484.53 -2.77 -11.15 16 3 C 0.50 10.54 7.82 87.65 0.69 11.22 16 4 O -0.56 -19.75 14.18 20.41 0.29 -19.46 16 5 C -0.15 -2.05 6.18 29.10 0.18 -1.87 16 6 C 0.50 12.99 7.82 87.65 0.69 13.67 16 7 O -0.56 -21.75 13.82 20.39 0.28 -21.47 16 8 N -0.70 -16.05 5.29 -441.15 -2.33 -18.39 16 9 C 0.15 4.58 4.08 45.28 0.18 4.76 16 10 H 0.09 3.20 7.55 -2.39 -0.02 3.18 16 11 C -0.17 -6.21 7.68 31.23 0.24 -5.97 16 12 C 0.17 6.85 4.35 45.28 0.20 7.05 16 13 H 0.07 2.83 8.12 -2.39 -0.02 2.81 16 14 N -0.72 -35.10 5.35 -321.57 -1.72 -36.82 16 15 C -0.24 -13.52 9.98 84.03 0.84 -12.69 16 16 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 17 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 18 N -0.96 -57.71 13.06 21.65 0.28 -57.43 16 19 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 C -0.11 -3.27 1.06 -52.31 -0.06 -3.33 16 24 C -0.12 -3.19 7.84 30.89 0.24 -2.95 16 25 C -0.13 -3.62 8.08 31.23 0.25 -3.37 16 26 C -0.11 -2.87 6.77 30.88 0.21 -2.66 16 27 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.42 1.08 8.83 -92.71 -0.82 0.26 16 31 H 0.17 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 6.66 6.93 -92.70 -0.64 6.02 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.38 19.48 5.86 -92.71 -0.54 18.93 16 37 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.05 1.74 6.42 -2.39 -0.02 1.73 16 43 H 0.11 2.07 6.96 -2.39 -0.02 2.06 16 Total: -1.00 -84.47 352.53 0.59 -83.87 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.96 Total: 29.81 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.49 Total: 2.74 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -6.54 Total: -123.79 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: 0.57 Total: -40.93 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -84.47 0.59 -83.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202805970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.764 kcal (2) G-P(sol) polarization free energy of solvation -84.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds