Wall clock time and date at job start Tue Mar 31 2020 03:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00074 * 2 1 4 4 C 1.52998 * 109.47373 * 264.83699 * 3 2 1 5 5 H 1.08999 * 112.73534 * 315.98174 * 4 3 2 6 6 C 1.53495 * 113.47016 * 86.72290 * 4 3 2 7 7 C 1.53611 * 83.30469 * 140.83402 * 6 4 3 8 8 N 1.47061 * 113.47114 * 185.23922 * 4 3 2 9 9 C 1.36940 * 136.05589 * 38.05898 * 8 4 3 10 10 H 1.07991 * 120.00023 * 4.80467 * 9 8 4 11 11 C 1.38816 * 119.99864 * 184.80606 * 9 8 4 12 12 N 1.31619 * 119.99773 * 5.36069 * 11 9 8 13 13 Si 1.86802 * 120.00043 * 185.36461 * 11 9 8 14 14 H 1.48494 * 109.46736 * 5.00313 * 13 11 9 15 15 H 1.48500 * 109.46890 * 124.99993 * 13 11 9 16 16 H 1.48495 * 109.47033 * 245.00232 * 13 11 9 17 17 C 1.34779 * 120.00061 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99617 * 184.87187 * 17 2 1 19 19 C 1.50692 * 119.99794 * 4.87017 * 17 2 1 20 20 N 1.46504 * 109.47247 * 185.22871 * 19 17 2 21 21 C 1.46760 * 124.35452 * 265.56455 * 20 19 17 22 22 C 1.54478 * 105.47318 * 196.99511 * 21 20 19 23 23 C 1.54620 * 101.76438 * 334.57782 * 22 21 20 24 24 C 1.34417 * 124.34657 * 85.53560 * 20 19 17 25 25 O 1.21284 * 124.94082 * 359.34453 * 24 20 19 26 26 H 1.08997 * 109.46979 * 270.00138 * 1 2 3 27 27 H 1.09004 * 109.46928 * 30.00083 * 1 2 3 28 28 H 1.08996 * 109.47034 * 149.99898 * 1 2 3 29 29 H 1.09003 * 109.47178 * 24.83481 * 3 2 1 30 30 H 1.08997 * 109.47522 * 144.83124 * 3 2 1 31 31 H 1.08994 * 114.20636 * 254.43946 * 6 4 3 32 32 H 1.09000 * 114.20386 * 27.26557 * 6 4 3 33 33 H 1.09005 * 113.50422 * 219.18620 * 7 6 4 34 34 H 1.09003 * 113.46885 * 88.76950 * 7 6 4 35 35 H 0.97001 * 119.99722 * 180.02562 * 12 11 9 36 36 H 1.09003 * 109.47352 * 65.23301 * 19 17 2 37 37 H 1.09004 * 109.47644 * 305.23217 * 19 17 2 38 38 H 1.09007 * 110.24260 * 315.99292 * 21 20 19 39 39 H 1.09000 * 110.24709 * 77.90029 * 21 20 19 40 40 H 1.08992 * 110.97016 * 92.70302 * 22 21 20 41 41 H 1.09000 * 110.96259 * 216.46202 * 22 21 20 42 42 H 1.09002 * 110.48928 * 266.12277 * 23 22 21 43 43 H 1.09006 * 110.48829 * 143.48098 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5650 1.6455 -1.4366 5 1 2.9467 0.8003 -2.0093 6 6 1.4636 2.4292 -2.1638 7 6 2.6513 3.2204 -2.7321 8 7 3.4102 2.8454 -1.5295 9 6 4.4471 3.3790 -0.8116 10 1 4.8673 2.8311 0.0187 11 6 4.9581 4.6242 -1.1512 12 7 4.3796 5.3381 -2.0937 13 14 6.4666 5.2866 -0.2708 14 1 6.9956 4.2507 0.6522 15 1 7.5079 5.6381 -1.2695 16 1 6.0953 6.4975 0.5044 17 6 2.1389 -1.1672 0.0005 18 8 3.3484 -1.1690 0.0897 19 6 1.3895 -2.4699 -0.1097 20 7 2.3264 -3.5864 0.0387 21 6 2.9691 -4.2828 -1.0820 22 6 3.4942 -5.6116 -0.4948 23 6 3.6734 -5.2479 0.9973 24 6 2.7083 -4.1042 1.2189 25 8 2.3374 -3.7085 2.3037 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5138 29 1 1.5715 2.0497 0.4316 30 1 3.1067 1.1634 0.5919 31 1 0.9171 1.8476 -2.9062 32 1 0.8163 3.0070 -1.5041 33 1 2.4629 4.2912 -2.8100 34 1 3.0561 2.7958 -3.6508 35 1 4.7369 6.2081 -2.3312 36 1 0.9052 -2.5292 -1.0844 37 1 0.6346 -2.5224 0.6748 38 1 2.2423 -4.4798 -1.8702 39 1 3.7954 -3.6883 -1.4716 40 1 2.7610 -6.4088 -0.6167 41 1 4.4472 -5.8878 -0.9461 42 1 4.6967 -4.9267 1.1915 43 1 3.4120 -6.0957 1.6307 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230752371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:11 Heat of formation + Delta-G solvation = 3.970811 kcal Electronic energy + Delta-G solvation = -24394.887868 eV Core-core repulsion = 20863.740794 eV Total energy + Delta-G solvation = -3531.147074 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69952 -39.41343 -37.90378 -36.45711 -35.16657 -33.07918 -32.13878 -29.19928 -27.89399 -27.74295 -27.35568 -25.82804 -23.42315 -22.45017 -22.05845 -20.06877 -19.23045 -18.81573 -17.37373 -16.92273 -16.70908 -16.47354 -15.68161 -15.56697 -15.16696 -14.61628 -14.13030 -13.88896 -13.74662 -13.51664 -13.47066 -13.08913 -12.91815 -12.84440 -12.55903 -12.46093 -12.14625 -11.81575 -11.69511 -11.52992 -11.27811 -11.04507 -10.81939 -10.74206 -10.38830 -9.98263 -9.90955 -9.78236 -9.77444 -9.49259 -8.78065 -8.75635 -8.25652 -6.82471 -5.71623 -3.05145 2.42916 2.70440 2.79300 3.31971 3.42681 3.48957 3.52074 4.15450 4.22963 4.49812 4.54353 4.60474 4.80200 4.89262 5.08242 5.11389 5.21636 5.24670 5.37469 5.38134 5.43561 5.51547 5.55141 5.55721 5.68820 5.74935 5.81288 6.00988 6.16345 6.24331 6.33164 6.47756 6.56161 6.71003 6.88176 6.93471 7.26695 7.45984 7.57501 7.63268 8.04632 8.04726 8.37113 9.09102 9.75612 10.68753 11.44469 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.003724 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.559345 B = 7516.871400 C = 8149.607033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.117 3.883 4 C 0.136 3.864 5 H 0.041 0.959 6 C -0.166 4.166 7 C 0.145 3.855 8 N -0.600 5.600 9 C -0.213 4.213 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.491 3.509 18 O -0.524 6.524 19 C 0.110 3.890 20 N -0.604 5.604 21 C 0.102 3.898 22 C -0.130 4.130 23 C -0.153 4.153 24 C 0.522 3.478 25 O -0.532 6.532 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.020 0.980 35 H 0.252 0.748 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.260 -20.803 -0.216 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.006 4.006 4 C 0.028 3.972 5 H 0.059 0.941 6 C -0.204 4.204 7 C 0.020 3.980 8 N -0.326 5.326 9 C -0.341 4.341 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.217 1.217 17 C 0.276 3.724 18 O -0.400 6.400 19 C -0.016 4.016 20 N -0.338 5.338 21 C -0.021 4.021 22 C -0.167 4.167 23 C -0.193 4.193 24 C 0.310 3.690 25 O -0.408 6.408 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.581 -20.271 0.499 22.427 hybrid contribution 0.862 0.538 0.185 1.033 sum -8.719 -19.733 0.684 21.584 Atomic orbital electron populations 1.21827 0.79877 1.03223 1.01712 1.47906 1.06806 1.06463 1.73338 1.21884 0.96942 0.82467 0.99352 1.22399 0.90325 0.91447 0.93054 0.94120 1.23744 0.96841 0.99801 1.00006 1.22132 0.86790 1.00002 0.89105 1.45596 1.38416 1.20888 1.27658 1.18968 1.06922 0.98971 1.09194 0.90238 1.24760 0.99816 0.96624 0.99227 1.69843 1.41100 1.12410 1.33272 0.86072 0.82572 0.78716 0.78636 1.20397 1.21717 1.21704 1.21054 0.88590 0.85576 0.77163 1.90730 1.14024 1.86933 1.48268 1.21255 0.91564 0.84134 1.04629 1.47819 1.45544 1.32527 1.07898 1.22149 0.98098 0.92804 0.89011 1.22576 1.02814 0.96713 0.94635 1.22306 1.00851 0.98104 0.98048 1.20897 0.80835 0.83888 0.83388 1.90725 1.58453 1.65218 1.26407 0.92623 0.90342 0.91565 0.90245 0.90283 0.92951 0.90522 0.90304 0.96264 0.93819 0.87227 0.87574 0.90267 0.90420 0.89973 0.89022 0.87571 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.14 59.85 0.61 1.37 16 2 N -0.61 -9.20 2.88 -181.58 -0.52 -9.73 16 3 C 0.12 2.22 5.34 -4.04 -0.02 2.20 16 4 C 0.14 2.88 4.27 -72.41 -0.31 2.57 16 5 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.17 -3.09 8.02 -26.16 -0.21 -3.30 16 7 C 0.15 3.49 7.59 -8.45 -0.06 3.42 16 8 N -0.60 -15.83 3.64 -176.82 -0.64 -16.47 16 9 C -0.21 -6.19 10.54 -15.06 -0.16 -6.35 16 10 H 0.08 2.30 7.83 -52.49 -0.41 1.89 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.76 11.42 55.49 0.63 -27.13 16 13 Si 0.91 22.94 29.56 -169.99 -5.02 17.91 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 C 0.49 7.93 7.69 -10.99 -0.08 7.85 16 18 O -0.52 -11.04 16.07 5.56 0.09 -10.95 16 19 C 0.11 1.25 4.80 -5.20 -0.02 1.22 16 20 N -0.60 -7.14 2.43 -173.78 -0.42 -7.56 16 21 C 0.10 0.85 7.34 -3.12 -0.02 0.83 16 22 C -0.13 -0.79 7.18 -25.10 -0.18 -0.97 16 23 C -0.15 -1.36 6.86 -26.75 -0.18 -1.54 16 24 C 0.52 7.11 8.02 -10.86 -0.09 7.02 16 25 O -0.53 -9.51 17.66 5.55 0.10 -9.42 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 28 H 0.07 0.46 6.55 -51.93 -0.34 0.12 16 29 H 0.08 1.44 7.77 -51.93 -0.40 1.04 16 30 H 0.08 1.78 7.52 -51.93 -0.39 1.39 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.38 7.94 -51.93 -0.41 0.96 16 33 H 0.08 2.08 6.85 -51.93 -0.36 1.73 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.11 0.84 7.81 -51.93 -0.41 0.43 16 37 H 0.11 1.10 7.72 -51.93 -0.40 0.70 16 38 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -38.37 356.08 -8.16 -46.53 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.90 Total: -2.55 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: -0.84 Total: 13.99 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.96 Total: -60.89 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.19 Total: -20.37 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.37 -8.16 -46.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230752371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.503 kcal (2) G-P(sol) polarization free energy of solvation -38.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds