Wall clock time and date at job start Tue Mar 31 2020 03:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21586 * 120.00279 * 359.97438 * 3 2 1 5 5 N 1.34783 * 119.99993 * 180.02562 * 3 2 1 6 6 C 1.47654 * 125.81168 * 0.02562 * 5 3 2 7 7 C 1.54977 * 104.85707 * 203.96883 * 6 5 3 8 8 C 1.55325 * 101.67006 * 323.40718 * 7 6 5 9 9 C 1.46230 * 125.81246 * 179.71908 * 5 3 2 10 10 C 1.53892 * 110.90214 * 299.88378 * 9 5 3 11 11 C 1.54639 * 101.59136 * 96.51497 * 10 9 5 12 12 N 1.46848 * 105.50492 * 24.77964 * 11 10 9 13 13 C 1.46495 * 124.36672 * 163.12836 * 12 11 10 14 14 C 1.53003 * 109.47252 * 89.99752 * 13 12 11 15 15 C 1.50707 * 109.47013 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99714 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99564 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47353 * 90.00427 * 19 17 15 21 21 H 1.48506 * 109.46879 * 209.99798 * 19 17 15 22 22 H 1.48500 * 109.47478 * 329.99641 * 19 17 15 23 23 C 1.34653 * 111.26448 * 343.12177 * 12 11 10 24 24 O 1.21274 * 125.07672 * 180.83589 * 23 12 11 25 25 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 26 26 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 28 28 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 29 29 H 1.08995 * 110.36533 * 322.81917 * 6 5 3 30 30 H 1.09002 * 110.35623 * 85.12558 * 6 5 3 31 31 H 1.09000 * 110.98533 * 81.50187 * 7 6 5 32 32 H 1.09003 * 110.98646 * 205.31134 * 7 6 5 33 33 H 1.08991 * 110.76403 * 153.20388 * 8 7 6 34 34 H 1.09002 * 110.76006 * 276.59309 * 8 7 6 35 35 H 1.09009 * 111.00170 * 214.58833 * 10 9 5 36 36 H 1.08991 * 111.00506 * 338.43270 * 10 9 5 37 37 H 1.09001 * 110.23790 * 143.78423 * 11 10 9 38 38 H 1.08995 * 110.23817 * 265.76791 * 11 10 9 39 39 H 1.09009 * 109.47034 * 209.99585 * 13 12 11 40 40 H 1.08999 * 109.47350 * 329.99359 * 13 12 11 41 41 H 1.08995 * 109.47200 * 299.99797 * 14 13 12 42 42 H 1.09004 * 109.46880 * 59.99794 * 14 13 12 43 43 H 0.96997 * 120.00176 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4867 1.1673 -0.0005 6 6 4.3507 -0.0301 -0.0017 7 6 5.6934 0.4482 0.6067 8 6 5.8054 1.8859 0.0296 9 6 4.3423 2.3531 -0.0064 10 6 4.0822 3.2116 -1.2568 11 6 3.0904 4.2646 -0.7100 12 7 3.3457 4.3314 0.7346 13 6 2.9017 5.4242 1.6032 14 6 1.5116 5.1035 2.1563 15 6 1.0551 6.2275 3.0504 16 1 1.6924 7.0850 3.2080 17 6 -0.1767 6.1615 3.6664 18 7 -0.9534 5.1179 3.4733 19 14 -0.7428 7.5550 4.7740 20 1 -1.4776 8.5618 3.9666 21 1 -1.6392 7.0163 5.8283 22 1 0.4381 8.1948 5.4076 23 6 4.0406 3.2584 1.1578 24 8 4.3737 3.0522 2.3055 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 1.9500 -0.8401 0.0004 29 1 3.9127 -0.8145 0.6155 30 1 4.5017 -0.3877 -1.0202 31 1 5.6439 0.4673 1.6954 32 1 6.5203 -0.1748 0.2658 33 1 6.4002 2.5206 0.6862 34 1 6.2256 1.8670 -0.9760 35 1 5.0010 3.6839 -1.6045 36 1 3.6253 2.6192 -2.0494 37 1 3.2777 5.2343 -1.1712 38 1 2.0641 3.9490 -0.8974 39 1 3.6036 5.5400 2.4292 40 1 2.8597 6.3501 1.0296 41 1 0.8098 4.9877 1.3305 42 1 1.5537 4.1775 2.7300 43 1 -1.8198 5.0713 3.9069 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274240108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:19 Heat of formation + Delta-G solvation = -45.514785 kcal Electronic energy + Delta-G solvation = -25649.190958 eV Core-core repulsion = 22115.898028 eV Total energy + Delta-G solvation = -3533.292930 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.21338 -38.90496 -37.10770 -35.78455 -34.38248 -33.39321 -31.80666 -31.54002 -29.00149 -27.68935 -26.52153 -24.96803 -23.89947 -22.19921 -21.87450 -20.88622 -19.79675 -19.00325 -17.80454 -16.60191 -16.39424 -15.68165 -15.31945 -15.09139 -14.79724 -14.69928 -14.37221 -14.06111 -13.54868 -13.44893 -13.31322 -12.98890 -12.64744 -12.42036 -12.37964 -12.20508 -12.05751 -11.97634 -11.54626 -11.31899 -11.10274 -11.01611 -10.85670 -10.73406 -10.56646 -9.88018 -9.80827 -9.62148 -9.48363 -9.06076 -8.95618 -8.31481 -8.22020 -7.71342 -5.86607 -3.90214 2.42817 3.34789 3.38734 3.39236 3.44525 3.48811 3.77250 4.05331 4.38183 4.43416 4.55890 4.58242 4.88548 4.91097 5.09615 5.26102 5.26915 5.33990 5.48052 5.48645 5.54757 5.68974 5.69703 5.78540 5.87762 5.94589 5.99666 6.09282 6.21810 6.30092 6.40996 6.60923 6.68923 7.04112 7.04203 7.24163 7.77353 7.86614 8.03477 8.10220 8.19875 8.50607 8.80830 8.86139 9.18054 9.72214 11.24304 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.005057 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.365367 B = 5536.018236 C = 6343.569676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.749 5.749 3 C 0.711 3.289 4 O -0.548 6.548 5 N -0.617 5.617 6 C 0.102 3.898 7 C -0.130 4.130 8 C -0.109 4.109 9 C 0.151 3.849 10 C -0.136 4.136 11 C 0.102 3.898 12 N -0.589 5.589 13 C 0.130 3.870 14 C 0.019 3.981 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.514 3.486 24 O -0.534 6.534 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.392 0.608 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.021 0.979 42 H 0.018 0.982 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.867 -13.643 -13.734 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.405 5.405 3 C 0.413 3.587 4 O -0.422 6.422 5 N -0.357 5.357 6 C -0.021 4.021 7 C -0.168 4.168 8 C -0.148 4.148 9 C 0.061 3.939 10 C -0.175 4.175 11 C -0.021 4.021 12 N -0.320 5.320 13 C 0.009 3.991 14 C -0.019 4.019 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C 0.298 3.702 24 O -0.411 6.411 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.225 0.775 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.216 -12.924 -13.025 21.505 hybrid contribution -0.398 0.220 0.633 0.780 sum 10.818 -12.703 -12.392 20.784 Atomic orbital electron populations 1.21401 0.77807 1.01525 1.02897 1.44876 1.07685 1.06718 1.81214 1.15542 0.80041 0.84753 0.78343 1.91042 1.66242 1.29354 1.55581 1.47293 1.03246 1.06355 1.78818 1.22336 0.91166 0.88180 1.00442 1.22806 0.96172 0.95799 1.02020 1.22483 0.92836 0.97243 1.02211 1.20939 0.91140 0.86313 0.95502 1.22918 1.00287 0.97560 0.96691 1.22207 1.01113 0.98100 0.80718 1.48358 1.52413 1.22249 1.09012 1.21774 0.99290 0.86148 0.91847 1.19309 0.89505 0.97040 0.95998 1.21151 1.01972 1.04637 1.28263 0.92690 1.25001 0.96757 0.95807 0.96725 1.70017 1.10309 1.28815 1.43717 0.86598 0.78597 0.82335 0.80465 1.20706 1.21288 1.19871 1.20403 0.78572 0.82257 0.88965 1.90656 1.55591 1.74974 1.19903 0.91791 0.91052 0.92361 0.77499 0.91000 0.91315 0.89753 0.89698 0.89305 0.89797 0.89677 0.89536 0.91636 0.88658 0.91531 0.91888 0.96041 0.96385 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.32 10.70 59.85 0.64 1.96 16 2 N -0.75 -9.63 5.67 -72.07 -0.41 -10.04 16 3 C 0.71 12.04 8.10 -86.91 -0.70 11.34 16 4 O -0.55 -11.86 12.40 5.29 0.07 -11.80 16 5 N -0.62 -8.83 2.85 -163.01 -0.47 -9.30 16 6 C 0.10 0.96 6.60 -2.37 -0.02 0.94 16 7 C -0.13 -1.22 7.09 -24.45 -0.17 -1.39 16 8 C -0.11 -1.19 5.87 -25.17 -0.15 -1.33 16 9 C 0.15 2.25 0.85 -132.41 -0.11 2.14 16 10 C -0.14 -1.75 5.95 -25.40 -0.15 -1.90 16 11 C 0.10 1.73 6.39 -2.99 -0.02 1.71 16 12 N -0.59 -12.39 2.68 -172.50 -0.46 -12.85 16 13 C 0.13 3.09 5.88 -4.04 -0.02 3.07 16 14 C 0.02 0.57 5.30 -27.88 -0.15 0.42 16 15 C -0.52 -15.90 9.11 -34.44 -0.31 -16.21 16 16 H 0.05 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -28.70 13.29 55.43 0.74 -27.96 16 19 Si 0.89 22.83 29.54 -169.99 -5.02 17.81 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 23 C 0.51 10.66 6.20 -11.12 -0.07 10.60 16 24 O -0.53 -13.05 17.42 5.56 0.10 -12.95 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 3.63 7.33 -40.82 -0.30 3.33 16 29 H 0.07 0.59 7.32 -51.93 -0.38 0.21 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.06 7.78 -51.93 -0.40 0.66 16 34 H 0.08 0.66 7.80 -51.93 -0.41 0.25 16 35 H 0.08 0.86 7.83 -51.92 -0.41 0.45 16 36 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.88 5.93 -51.93 -0.31 1.57 16 39 H 0.07 1.63 7.95 -51.92 -0.41 1.22 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -39.75 346.14 -8.38 -48.13 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.80 Total: 0.71 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: -1.33 Total: 13.03 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.60 Total: -60.15 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.16 Total: -24.75 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -39.75 -8.38 -48.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274240108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.618 kcal (2) G-P(sol) polarization free energy of solvation -39.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds