Wall clock time and date at job start Tue Mar 31 2020 03:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21586 * 120.00279 * 359.97438 * 3 2 1 5 5 N 1.34783 * 119.99993 * 180.02562 * 3 2 1 6 6 C 1.47654 * 125.81168 * 0.02562 * 5 3 2 7 7 C 1.54977 * 104.85707 * 203.96883 * 6 5 3 8 8 C 1.55325 * 101.67006 * 323.40718 * 7 6 5 9 9 C 1.46230 * 125.81246 * 179.71908 * 5 3 2 10 10 C 1.53892 * 110.90214 * 299.88378 * 9 5 3 11 11 C 1.54639 * 101.59136 * 96.51497 * 10 9 5 12 12 N 1.46848 * 105.50492 * 24.77964 * 11 10 9 13 13 C 1.46495 * 124.36672 * 163.12836 * 12 11 10 14 14 C 1.53003 * 109.47252 * 89.99752 * 13 12 11 15 15 C 1.50707 * 109.47013 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99714 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99564 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47353 * 90.00427 * 19 17 15 21 21 H 1.48506 * 109.46879 * 209.99798 * 19 17 15 22 22 H 1.48500 * 109.47478 * 329.99641 * 19 17 15 23 23 C 1.34653 * 111.26448 * 343.12177 * 12 11 10 24 24 O 1.21274 * 125.07672 * 180.83589 * 23 12 11 25 25 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 26 26 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 28 28 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 29 29 H 1.08995 * 110.36533 * 322.81917 * 6 5 3 30 30 H 1.09002 * 110.35623 * 85.12558 * 6 5 3 31 31 H 1.09000 * 110.98533 * 81.50187 * 7 6 5 32 32 H 1.09003 * 110.98646 * 205.31134 * 7 6 5 33 33 H 1.08991 * 110.76403 * 153.20388 * 8 7 6 34 34 H 1.09002 * 110.76006 * 276.59309 * 8 7 6 35 35 H 1.09009 * 111.00170 * 214.58833 * 10 9 5 36 36 H 1.08991 * 111.00506 * 338.43270 * 10 9 5 37 37 H 1.09001 * 110.23790 * 143.78423 * 11 10 9 38 38 H 1.08995 * 110.23817 * 265.76791 * 11 10 9 39 39 H 1.09009 * 109.47034 * 209.99585 * 13 12 11 40 40 H 1.08999 * 109.47350 * 329.99359 * 13 12 11 41 41 H 1.08995 * 109.47200 * 299.99797 * 14 13 12 42 42 H 1.09004 * 109.46880 * 59.99794 * 14 13 12 43 43 H 0.96997 * 120.00176 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4867 1.1673 -0.0005 6 6 4.3507 -0.0301 -0.0017 7 6 5.6934 0.4482 0.6067 8 6 5.8054 1.8859 0.0296 9 6 4.3423 2.3531 -0.0064 10 6 4.0822 3.2116 -1.2568 11 6 3.0904 4.2646 -0.7100 12 7 3.3457 4.3314 0.7346 13 6 2.9017 5.4242 1.6032 14 6 1.5116 5.1035 2.1563 15 6 1.0551 6.2275 3.0504 16 1 1.6924 7.0850 3.2080 17 6 -0.1767 6.1615 3.6664 18 7 -0.9534 5.1179 3.4733 19 14 -0.7428 7.5550 4.7740 20 1 -1.4776 8.5618 3.9666 21 1 -1.6392 7.0163 5.8283 22 1 0.4381 8.1948 5.4076 23 6 4.0406 3.2584 1.1578 24 8 4.3737 3.0522 2.3055 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 1.9500 -0.8401 0.0004 29 1 3.9127 -0.8145 0.6155 30 1 4.5017 -0.3877 -1.0202 31 1 5.6439 0.4673 1.6954 32 1 6.5203 -0.1748 0.2658 33 1 6.4002 2.5206 0.6862 34 1 6.2256 1.8670 -0.9760 35 1 5.0010 3.6839 -1.6045 36 1 3.6253 2.6192 -2.0494 37 1 3.2777 5.2343 -1.1712 38 1 2.0641 3.9490 -0.8974 39 1 3.6036 5.5400 2.4292 40 1 2.8597 6.3501 1.0296 41 1 0.8098 4.9877 1.3305 42 1 1.5537 4.1775 2.7300 43 1 -1.8198 5.0713 3.9069 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274240108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:18 Heat of formation + Delta-G solvation = -76.500009 kcal Electronic energy + Delta-G solvation = -25650.534578 eV Core-core repulsion = 22115.898028 eV Total energy + Delta-G solvation = -3534.636550 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.47529 -40.30874 -38.32516 -37.44377 -35.82654 -35.37322 -33.53111 -32.62262 -30.79642 -28.94710 -27.57363 -27.01245 -25.10107 -23.71338 -23.28022 -22.16205 -21.20611 -20.36688 -19.09909 -18.70273 -17.73042 -17.18070 -16.81147 -16.70162 -16.34545 -16.04152 -15.77454 -15.39521 -14.91253 -14.67708 -14.50993 -14.49025 -14.30038 -14.05002 -13.71182 -13.57362 -13.46200 -13.13381 -13.04946 -12.86826 -12.72175 -12.43765 -12.16305 -12.07143 -11.97681 -11.79951 -11.71804 -11.43560 -11.19378 -10.90714 -10.64345 -10.23558 -9.52973 -9.45341 -8.25199 -6.41476 1.18123 1.33871 1.38607 1.49742 1.92963 2.07429 2.22579 2.39387 3.06021 3.07390 3.31146 3.42618 3.58996 3.81217 4.05359 4.20513 4.24396 4.28413 4.39461 4.52303 4.57405 4.59531 4.65386 4.69210 4.77823 4.83965 4.90478 4.93348 4.95706 5.07870 5.15445 5.28294 5.33909 5.35768 5.43053 5.51934 5.58214 5.80717 6.00011 6.11488 6.33751 6.75056 6.95557 7.21801 7.28892 7.59463 8.87229 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.005057 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.365367 B = 5536.018236 C = 6343.569676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.734 5.734 3 C 0.696 3.304 4 O -0.608 6.608 5 N -0.620 5.620 6 C 0.096 3.904 7 C -0.126 4.126 8 C -0.103 4.103 9 C 0.150 3.850 10 C -0.116 4.116 11 C 0.093 3.907 12 N -0.600 5.600 13 C 0.141 3.859 14 C 0.041 3.959 15 C -0.550 4.550 16 H 0.070 0.930 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.260 1.260 23 C 0.495 3.505 24 O -0.587 6.587 25 H 0.020 0.980 26 H 0.121 0.879 27 H 0.051 0.949 28 H 0.413 0.587 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.089 0.911 41 H -0.015 1.015 42 H -0.043 1.043 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.866 -14.285 -15.673 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.391 5.391 3 C 0.398 3.602 4 O -0.487 6.487 5 N -0.359 5.359 6 C -0.025 4.025 7 C -0.163 4.163 8 C -0.141 4.141 9 C 0.060 3.940 10 C -0.154 4.154 11 C -0.029 4.029 12 N -0.330 5.330 13 C 0.019 3.981 14 C 0.003 3.997 15 C -0.588 4.588 16 H 0.088 0.912 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.184 1.184 23 C 0.281 3.719 24 O -0.468 6.468 25 H 0.039 0.961 26 H 0.139 0.861 27 H 0.070 0.930 28 H 0.250 0.750 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.004 0.996 42 H -0.024 1.024 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.264 -13.636 -15.014 24.234 hybrid contribution -1.079 0.345 1.270 1.702 sum 12.185 -13.291 -13.744 22.672 Atomic orbital electron populations 1.21441 0.77608 1.03923 1.00473 1.44745 1.07845 1.06558 1.79924 1.15991 0.81070 0.84918 0.78245 1.91025 1.67874 1.31645 1.58144 1.47440 1.02718 1.08036 1.77717 1.22755 0.90101 0.86411 1.03219 1.22839 0.97704 0.95779 1.00011 1.22599 0.89385 0.97421 1.04728 1.21113 0.93812 0.85964 0.93082 1.22974 1.00735 0.95895 0.95817 1.22403 1.00877 1.01020 0.78572 1.48502 1.52139 1.21778 1.10564 1.21357 0.95545 0.88508 0.92678 1.18998 0.92242 0.94391 0.94038 1.21597 1.02900 1.05273 1.29002 0.91212 1.26183 0.96624 0.99069 0.98323 1.70202 1.10892 1.31469 1.44845 0.85248 0.78427 0.78199 0.77915 1.18864 1.20675 1.18377 1.21704 0.77397 0.82687 0.90077 1.90598 1.57519 1.75991 1.22649 0.96080 0.86097 0.93005 0.75043 0.90049 0.87008 0.93202 0.85177 0.90821 0.85004 0.85506 0.87812 0.89105 0.92080 0.92702 0.89281 0.99621 1.02420 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.77 10.70 127.77 1.37 4.14 16 2 N -0.73 -18.73 5.67 -500.18 -2.84 -21.57 16 3 C 0.70 24.20 8.10 179.05 1.45 25.65 16 4 O -0.61 -28.31 12.40 -3.99 -0.05 -28.36 16 5 N -0.62 -17.13 2.85 -787.91 -2.25 -19.38 16 6 C 0.10 1.48 6.60 86.83 0.57 2.05 16 7 C -0.13 -1.96 7.09 32.07 0.23 -1.73 16 8 C -0.10 -1.90 5.87 31.60 0.19 -1.72 16 9 C 0.15 4.30 0.85 3.37 0.00 4.30 16 10 C -0.12 -2.70 5.95 31.45 0.19 -2.52 16 11 C 0.09 3.21 6.39 86.87 0.56 3.77 16 12 N -0.60 -26.47 2.68 -818.13 -2.19 -28.66 16 13 C 0.14 7.14 5.88 86.38 0.51 7.64 16 14 C 0.04 2.62 5.30 29.85 0.16 2.78 16 15 C -0.55 -34.98 9.11 25.60 0.23 -34.75 16 16 H 0.07 4.13 7.74 -2.91 -0.02 4.11 16 17 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 18 N -0.93 -63.25 13.29 21.45 0.28 -62.96 16 19 Si 0.98 47.76 29.54 68.60 2.03 49.78 16 20 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.49 21.42 6.20 87.62 0.54 21.96 16 24 O -0.59 -30.63 17.42 -3.01 -0.05 -30.68 16 25 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 28 H 0.41 6.84 7.33 -92.71 -0.68 6.16 16 29 H 0.08 1.11 7.32 -2.39 -0.02 1.09 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.63 7.78 -2.39 -0.02 1.61 16 34 H 0.13 1.23 7.80 -2.39 -0.02 1.21 16 35 H 0.13 1.93 7.83 -2.38 -0.02 1.91 16 36 H 0.10 2.12 8.07 -2.39 -0.02 2.10 16 37 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.06 2.56 5.93 -2.39 -0.01 2.55 16 39 H 0.05 2.86 7.95 -2.38 -0.02 2.84 16 40 H 0.09 3.97 8.14 -2.39 -0.02 3.95 16 41 H -0.01 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H -0.04 -3.17 8.14 -2.38 -0.02 -3.19 16 43 H 0.26 16.54 8.31 -92.71 -0.77 15.77 16 Total: -1.00 -98.81 346.14 1.71 -97.10 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.33 Total: 12.95 kcal Atomic # 6 Polarization: 25.32 SS G_CDS: 6.45 Total: 31.78 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -6.99 Total: -132.57 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -0.10 Total: -59.04 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -98.81 1.71 -97.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274240108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.595 kcal (2) G-P(sol) polarization free energy of solvation -98.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds