Wall clock time and date at job start Tue Mar 31 2020 04:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47029 * 2 1 4 4 N 1.30514 * 126.35035 * 270.04080 * 3 2 1 5 5 N 1.28599 * 109.67652 * 179.97438 * 4 3 2 6 6 C 1.30514 * 109.66997 * 359.72472 * 5 4 3 7 7 N 1.35496 * 126.34111 * 90.00101 * 3 2 1 8 8 C 1.46501 * 126.98675 * 0.03525 * 7 3 2 9 9 C 1.52995 * 109.47039 * 85.00063 * 8 7 3 10 10 N 1.46497 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.34781 * 120.00245 * 179.97438 * 10 9 8 12 12 O 1.21275 * 119.99676 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99971 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.47083 * 320.00492 * 13 11 10 15 15 N 1.46898 * 109.47113 * 200.00293 * 13 11 10 16 16 C 1.53000 * 109.46801 * 80.00207 * 13 11 10 17 17 C 1.52997 * 109.47060 * 184.99876 * 16 13 11 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46616 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 119.99966 * 22 20 18 25 25 H 1.48489 * 109.47200 * 240.00246 * 22 20 18 26 26 H 1.09001 * 109.47170 * 299.99770 * 1 2 3 27 27 H 1.08995 * 109.47016 * 59.99960 * 1 2 3 28 28 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47170 * 240.00230 * 2 1 3 30 30 H 1.09003 * 109.47370 * 119.99989 * 2 1 3 31 31 H 1.07998 * 126.35058 * 180.29576 * 6 5 4 32 32 H 1.09004 * 109.46754 * 324.99809 * 8 7 3 33 33 H 1.08999 * 109.46932 * 205.00247 * 8 7 3 34 34 H 1.09004 * 109.47555 * 60.00237 * 9 8 7 35 35 H 1.09009 * 109.47408 * 299.99951 * 9 8 7 36 36 H 0.97000 * 120.00041 * 359.97438 * 10 9 8 37 37 H 1.00899 * 111.00057 * 300.00501 * 15 13 11 38 38 H 1.00902 * 110.99515 * 63.95638 * 15 13 11 39 39 H 1.09002 * 109.47398 * 305.00045 * 16 13 11 40 40 H 1.09001 * 109.47194 * 65.00225 * 16 13 11 41 41 H 1.09002 * 109.47153 * 300.00319 * 17 16 13 42 42 H 1.08998 * 109.47533 * 59.99948 * 17 16 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2895 2.1504 -1.0512 5 7 2.6998 3.3120 -0.6822 6 6 2.7175 3.3781 0.6212 7 7 2.3000 2.1778 1.0914 8 6 2.1606 1.7813 2.4948 9 6 3.4270 1.0514 2.9468 10 7 3.2874 0.6544 4.3500 11 6 4.2871 -0.0075 4.9657 12 8 5.3023 -0.2739 4.3583 13 6 4.1436 -0.4154 6.4094 14 1 3.6560 0.3847 6.9663 15 7 5.4728 -0.6701 6.9807 16 6 3.2980 -1.6874 6.4983 17 6 3.0478 -2.0318 7.9678 18 6 2.2155 -3.2850 8.0555 19 1 1.8972 -3.7860 7.1532 20 6 1.8612 -3.7926 9.2875 21 7 2.2492 -3.1827 10.3862 22 14 0.8288 -5.3456 9.3961 23 1 0.5245 -5.8343 8.0273 24 1 1.5811 -6.3892 10.1380 25 1 -0.4392 -5.0483 10.1093 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.0125 4.2306 1.2149 32 1 1.3016 1.1188 2.6016 33 1 2.0135 2.6689 3.1102 34 1 4.2860 1.7140 2.8400 35 1 3.5741 0.1638 2.3313 36 1 2.4755 0.8678 4.8360 37 1 5.9456 -1.4084 6.4812 38 1 6.0286 0.1720 6.9926 39 1 2.3445 -1.5258 5.9955 40 1 3.8275 -2.5100 6.0174 41 1 4.0013 -2.1935 8.4706 42 1 2.5184 -1.2093 8.4488 43 1 2.0003 -3.5401 11.2530 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332142591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:14 Heat of formation + Delta-G solvation = 22.145818 kcal Electronic energy + Delta-G solvation = -23230.501456 eV Core-core repulsion = 19732.435260 eV Total energy + Delta-G solvation = -3498.066195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -43.49562 -40.01954 -36.82628 -35.33715 -34.69056 -34.09275 -32.88635 -30.25622 -29.96600 -29.73745 -26.58250 -24.96936 -24.22487 -23.09887 -22.59156 -21.12643 -20.70141 -19.96269 -17.74125 -17.30106 -16.66210 -16.35569 -16.10072 -15.87373 -15.66878 -15.31909 -14.90322 -14.53050 -14.31171 -14.16506 -13.96952 -13.60335 -13.16944 -12.91256 -12.44953 -12.35410 -12.15760 -12.09383 -11.78757 -11.65045 -11.63330 -10.97846 -10.81348 -10.66432 -10.64281 -10.61772 -10.30408 -9.91434 -9.53026 -9.49306 -9.40304 -9.07329 -8.48140 -8.31358 -6.01423 -4.03972 1.40816 1.89636 2.54656 2.57419 3.06235 3.28305 3.36479 3.39458 3.86490 3.94122 4.02655 4.21547 4.43259 4.47930 4.51834 4.70790 4.76940 4.92017 4.93331 5.01290 5.03869 5.30966 5.34183 5.38003 5.40277 5.44485 5.64125 5.68083 5.70413 5.83798 6.05334 6.29588 6.44260 6.51990 6.96323 7.14879 7.37995 7.65948 7.67972 7.86931 8.03980 8.06629 8.39724 8.40764 9.04218 9.59802 11.09442 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.002855 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.080675 B = 9803.291043 C =10916.797155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C 0.185 3.815 4 N -0.295 5.295 5 N -0.297 5.297 6 C 0.151 3.849 7 N -0.470 5.470 8 C 0.094 3.906 9 C 0.104 3.896 10 N -0.731 5.731 11 C 0.486 3.514 12 O -0.548 6.548 13 C 0.080 3.920 14 H 0.100 0.900 15 N -0.806 5.806 16 C -0.095 4.095 17 C 0.031 3.969 18 C -0.523 4.523 19 H 0.052 0.948 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.219 0.781 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.406 0.594 37 H 0.349 0.651 38 H 0.335 0.665 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.035 0.965 42 H 0.013 0.987 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 11.889 -15.371 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C -0.083 4.083 4 N -0.134 5.134 5 N -0.135 5.135 6 C -0.137 4.137 7 N -0.162 5.162 8 C -0.030 4.030 9 C -0.021 4.021 10 N -0.386 5.386 11 C 0.272 3.728 12 O -0.424 6.424 13 C -0.036 4.036 14 H 0.118 0.882 15 N -0.334 5.334 16 C -0.134 4.134 17 C -0.006 4.006 18 C -0.562 4.562 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.235 0.765 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.241 0.759 37 H 0.163 0.837 38 H 0.146 0.854 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.724 11.903 -16.389 20.328 hybrid contribution -0.686 -0.625 0.843 1.254 sum -2.411 11.277 -15.546 19.356 Atomic orbital electron populations 1.21750 0.93240 1.03013 1.02564 1.20090 0.96906 0.86198 1.04993 1.24995 1.02702 0.97878 0.82707 1.74279 1.16416 0.98958 1.23791 1.74265 1.17261 1.13062 1.08938 1.26489 1.03170 0.90422 0.93573 1.46157 1.49645 1.12335 1.08063 1.22093 0.99850 1.02549 0.78520 1.21524 0.96621 0.99936 0.84031 1.46000 1.21006 1.60061 1.11529 1.22917 0.82331 0.75731 0.91843 1.90676 1.29532 1.54704 1.67522 1.21878 0.93880 1.01488 0.86344 0.88225 1.58991 1.03863 1.12311 1.58235 1.21673 0.96152 0.92484 1.03053 1.19021 0.97686 0.95856 0.88072 1.21295 1.32704 1.10120 0.92060 0.92931 1.24996 0.96251 0.97148 0.95933 1.69982 1.45943 1.39753 0.97429 0.86594 0.80134 0.83568 0.78026 1.19842 1.21017 1.21079 0.92720 0.91722 0.90882 0.88014 0.89697 0.76490 0.87531 0.87307 0.90827 0.90796 0.75940 0.83704 0.85353 0.92805 0.92778 0.94643 0.96848 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.04 -0.30 6.19 -27.88 -0.17 -0.47 16 3 C 0.18 1.81 7.28 -154.99 -1.13 0.68 16 4 N -0.29 -3.84 12.21 32.79 0.40 -3.44 16 5 N -0.30 -3.75 12.21 29.69 0.36 -3.39 16 6 C 0.15 1.30 12.74 -89.94 -1.15 0.16 16 7 N -0.47 -3.69 2.75 -115.30 -0.32 -4.00 16 8 C 0.09 0.47 5.93 -4.04 -0.02 0.45 16 9 C 0.10 0.83 6.00 -4.05 -0.02 0.81 16 10 N -0.73 -6.67 5.56 -60.29 -0.33 -7.00 16 11 C 0.49 6.51 7.07 -10.98 -0.08 6.43 16 12 O -0.55 -9.15 16.25 5.56 0.09 -9.06 16 13 C 0.08 1.18 3.15 -68.86 -0.22 0.96 16 14 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 15 N -0.81 -12.46 8.44 -5.65 -0.05 -12.51 16 16 C -0.10 -1.74 4.78 -26.73 -0.13 -1.87 16 17 C 0.03 0.74 4.86 -27.89 -0.14 0.60 16 18 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 22 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.53 7.62 -51.93 -0.40 0.13 16 31 H 0.22 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.11 0.42 8.02 -51.93 -0.42 0.00 16 33 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.72 7.82 -51.92 -0.41 0.31 16 36 H 0.41 2.68 8.47 -40.82 -0.35 2.34 16 37 H 0.35 5.53 8.58 -39.29 -0.34 5.20 16 38 H 0.33 4.43 9.06 -39.29 -0.36 4.08 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.94 7.75 -51.93 -0.40 0.53 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -35.78 366.89 -8.55 -44.33 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.85 Total: 4.65 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.10 Total: -5.74 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.80 Total: -55.71 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.78 -8.55 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332142591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.474 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds