Wall clock time and date at job start Tue Mar 31 2020 04:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47029 * 2 1 4 4 N 1.30514 * 126.35035 * 270.04080 * 3 2 1 5 5 N 1.28599 * 109.67652 * 179.97438 * 4 3 2 6 6 C 1.30514 * 109.66997 * 359.72472 * 5 4 3 7 7 N 1.35496 * 126.34111 * 90.00101 * 3 2 1 8 8 C 1.46501 * 126.98675 * 0.03525 * 7 3 2 9 9 C 1.52995 * 109.47039 * 85.00063 * 8 7 3 10 10 N 1.46497 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.34781 * 120.00245 * 179.97438 * 10 9 8 12 12 O 1.21275 * 119.99676 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99971 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.47083 * 320.00492 * 13 11 10 15 15 N 1.46898 * 109.47113 * 200.00293 * 13 11 10 16 16 C 1.53000 * 109.46801 * 80.00207 * 13 11 10 17 17 C 1.52997 * 109.47060 * 184.99876 * 16 13 11 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46616 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 119.99966 * 22 20 18 25 25 H 1.48489 * 109.47200 * 240.00246 * 22 20 18 26 26 H 1.09001 * 109.47170 * 299.99770 * 1 2 3 27 27 H 1.08995 * 109.47016 * 59.99960 * 1 2 3 28 28 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47170 * 240.00230 * 2 1 3 30 30 H 1.09003 * 109.47370 * 119.99989 * 2 1 3 31 31 H 1.07998 * 126.35058 * 180.29576 * 6 5 4 32 32 H 1.09004 * 109.46754 * 324.99809 * 8 7 3 33 33 H 1.08999 * 109.46932 * 205.00247 * 8 7 3 34 34 H 1.09004 * 109.47555 * 60.00237 * 9 8 7 35 35 H 1.09009 * 109.47408 * 299.99951 * 9 8 7 36 36 H 0.97000 * 120.00041 * 359.97438 * 10 9 8 37 37 H 1.00899 * 111.00057 * 300.00501 * 15 13 11 38 38 H 1.00902 * 110.99515 * 63.95638 * 15 13 11 39 39 H 1.09002 * 109.47398 * 305.00045 * 16 13 11 40 40 H 1.09001 * 109.47194 * 65.00225 * 16 13 11 41 41 H 1.09002 * 109.47153 * 300.00319 * 17 16 13 42 42 H 1.08998 * 109.47533 * 59.99948 * 17 16 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2895 2.1504 -1.0512 5 7 2.6998 3.3120 -0.6822 6 6 2.7175 3.3781 0.6212 7 7 2.3000 2.1778 1.0914 8 6 2.1606 1.7813 2.4948 9 6 3.4270 1.0514 2.9468 10 7 3.2874 0.6544 4.3500 11 6 4.2871 -0.0075 4.9657 12 8 5.3023 -0.2739 4.3583 13 6 4.1436 -0.4154 6.4094 14 1 3.6560 0.3847 6.9663 15 7 5.4728 -0.6701 6.9807 16 6 3.2980 -1.6874 6.4983 17 6 3.0478 -2.0318 7.9678 18 6 2.2155 -3.2850 8.0555 19 1 1.8972 -3.7860 7.1532 20 6 1.8612 -3.7926 9.2875 21 7 2.2492 -3.1827 10.3862 22 14 0.8288 -5.3456 9.3961 23 1 0.5245 -5.8343 8.0273 24 1 1.5811 -6.3892 10.1380 25 1 -0.4392 -5.0483 10.1093 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.0125 4.2306 1.2149 32 1 1.3016 1.1188 2.6016 33 1 2.0135 2.6689 3.1102 34 1 4.2860 1.7140 2.8400 35 1 3.5741 0.1638 2.3313 36 1 2.4755 0.8678 4.8360 37 1 5.9456 -1.4084 6.4812 38 1 6.0286 0.1720 6.9926 39 1 2.3445 -1.5258 5.9955 40 1 3.8275 -2.5100 6.0174 41 1 4.0013 -2.1935 8.4706 42 1 2.5184 -1.2093 8.4488 43 1 2.0003 -3.5401 11.2530 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332142591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:14 Heat of formation + Delta-G solvation = -3.492902 kcal Electronic energy + Delta-G solvation = -23231.613234 eV Core-core repulsion = 19732.435260 eV Total energy + Delta-G solvation = -3499.177974 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.18803 -41.08091 -37.58989 -36.72726 -35.42750 -34.80311 -34.75132 -31.90889 -30.70391 -30.47527 -28.05971 -26.00069 -25.11777 -24.15529 -23.26066 -22.35688 -21.66683 -21.07227 -18.80434 -18.26049 -17.89191 -17.53489 -16.96092 -16.83567 -16.60416 -16.38942 -16.11778 -15.63591 -15.29884 -14.99845 -14.82110 -14.75268 -14.26385 -13.84058 -13.71719 -13.50765 -13.39767 -12.92887 -12.81529 -12.72950 -12.49813 -12.41861 -12.21562 -12.17259 -11.77291 -11.64116 -11.34533 -11.32140 -11.22541 -10.98236 -10.47488 -10.29497 -10.25917 -9.62932 -8.12303 -6.21860 0.76082 1.29757 1.42736 1.44382 1.47630 1.56156 1.82960 2.23562 2.46211 3.21538 3.28097 3.47681 3.52541 3.58018 3.70648 3.88866 3.95895 4.13062 4.14022 4.25104 4.28334 4.34779 4.42760 4.51851 4.68811 4.81636 4.82994 4.96423 4.97943 5.08961 5.13049 5.22769 5.29403 5.29645 5.60574 5.87274 5.88365 6.01949 6.10984 6.32747 6.39492 6.53298 6.98185 7.09869 7.46596 7.68283 8.98970 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.002855 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.080675 B = 9803.291043 C =10916.797155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C 0.184 3.816 4 N -0.343 5.343 5 N -0.348 5.348 6 C 0.164 3.836 7 N -0.468 5.468 8 C 0.099 3.901 9 C 0.109 3.891 10 N -0.709 5.709 11 C 0.492 3.508 12 O -0.583 6.583 13 C 0.086 3.914 14 H 0.117 0.883 15 N -0.822 5.822 16 C -0.082 4.082 17 C 0.037 3.963 18 C -0.540 4.540 19 H 0.057 0.943 20 C 0.001 3.999 21 N -0.930 5.930 22 Si 0.956 3.044 23 H -0.262 1.262 24 H -0.285 1.285 25 H -0.278 1.278 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.258 0.742 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.422 0.578 37 H 0.344 0.656 38 H 0.347 0.653 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.003 0.997 42 H -0.003 1.003 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 12.178 -15.303 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.085 4.085 4 N -0.182 5.182 5 N -0.186 5.186 6 C -0.124 4.124 7 N -0.159 5.159 8 C -0.023 4.023 9 C -0.017 4.017 10 N -0.363 5.363 11 C 0.278 3.722 12 O -0.462 6.462 13 C -0.030 4.030 14 H 0.135 0.865 15 N -0.351 5.351 16 C -0.120 4.120 17 C 0.000 4.000 18 C -0.578 4.578 19 H 0.075 0.925 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.782 3.218 23 H -0.186 1.186 24 H -0.211 1.211 25 H -0.204 1.204 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.274 0.726 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.260 0.740 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.021 0.979 42 H 0.016 0.984 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.255 12.221 -16.340 20.663 hybrid contribution -0.201 -0.685 0.856 1.115 sum -3.456 11.536 -15.484 19.616 Atomic orbital electron populations 1.21715 0.92316 1.03744 1.02257 1.20204 0.97593 0.84875 1.05460 1.25395 1.01780 0.98533 0.82798 1.74176 1.18339 0.99840 1.25829 1.74159 1.19449 1.13613 1.11333 1.27227 1.00932 0.91391 0.92871 1.46273 1.49090 1.11816 1.08678 1.22262 0.98610 1.04203 0.77246 1.21500 0.98065 0.99402 0.82697 1.45725 1.20393 1.58203 1.12029 1.22414 0.82653 0.76130 0.91030 1.90674 1.31176 1.56453 1.67918 1.21686 0.93099 1.00213 0.87956 0.86519 1.58978 1.04454 1.12990 1.58644 1.21403 0.97798 0.93889 0.98945 1.18841 0.95245 0.94417 0.91469 1.21779 1.32647 1.11123 0.92255 0.92467 1.25877 0.97595 1.00462 0.95703 1.70108 1.47429 1.41565 0.97996 0.85528 0.78429 0.79413 0.78435 1.18623 1.21072 1.20393 0.91954 0.93076 0.89602 0.88369 0.88405 0.72634 0.85641 0.83866 0.91691 0.92434 0.74011 0.84217 0.84005 0.90675 0.94148 0.97896 0.98439 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.04 -0.54 6.19 29.85 0.18 -0.35 16 3 C 0.18 3.41 7.28 137.98 1.01 4.41 16 4 N -0.34 -9.01 12.21 -50.16 -0.61 -9.62 16 5 N -0.35 -8.71 12.21 -59.99 -0.73 -9.44 16 6 C 0.16 2.49 12.74 180.11 2.29 4.79 16 7 N -0.47 -6.18 2.75 -518.71 -1.43 -7.61 16 8 C 0.10 0.61 5.93 86.38 0.51 1.12 16 9 C 0.11 1.42 6.00 86.38 0.52 1.94 16 10 N -0.71 -10.62 5.56 -463.05 -2.57 -13.19 16 11 C 0.49 12.18 7.07 87.66 0.62 12.80 16 12 O -0.58 -18.80 16.25 -3.01 -0.05 -18.85 16 13 C 0.09 2.41 3.15 44.17 0.14 2.55 16 14 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 15 N -0.82 -25.08 8.44 -171.80 -1.45 -26.53 16 16 C -0.08 -2.90 4.78 30.59 0.15 -2.75 16 17 C 0.04 1.81 4.86 29.85 0.15 1.95 16 18 C -0.54 -29.00 9.11 25.60 0.23 -28.76 16 19 H 0.06 2.95 7.74 -2.91 -0.02 2.92 16 20 C 0.00 0.07 5.46 84.65 0.46 0.54 16 21 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 22 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.00 7.62 -2.39 -0.02 0.98 16 31 H 0.26 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.13 0.40 8.02 -2.38 -0.02 0.38 16 33 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.06 1.00 7.82 -2.38 -0.02 0.98 16 36 H 0.42 3.76 8.47 -92.71 -0.79 2.97 16 37 H 0.34 10.98 8.58 -89.69 -0.77 10.21 16 38 H 0.35 8.94 9.06 -89.69 -0.81 8.13 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.00 0.14 7.75 -2.39 -0.02 0.12 16 42 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -80.04 366.89 1.11 -78.93 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -1.33 Total: 18.71 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 6.97 Total: -2.54 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -6.51 Total: -120.99 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -80.04 1.11 -78.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332142591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.436 kcal (2) G-P(sol) polarization free energy of solvation -80.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds