Wall clock time and date at job start Tue Mar 31 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99846 * 2 1 4 4 O 1.21279 * 119.99852 * 180.02562 * 3 2 1 5 5 C 1.50692 * 119.99968 * 0.02562 * 3 2 1 6 6 H 1.09001 * 110.22250 * 39.52411 * 5 3 2 7 7 C 1.54479 * 110.24875 * 277.49681 * 5 3 2 8 8 C 1.54621 * 101.76733 * 266.42136 * 7 5 3 9 9 C 1.51282 * 104.19629 * 335.19934 * 8 7 5 10 10 O 1.21281 * 124.94504 * 196.23592 * 9 8 7 11 11 N 1.34414 * 110.11332 * 16.25270 * 9 8 7 12 12 C 1.46499 * 120.00105 * 180.02562 * 2 1 3 13 13 H 1.08996 * 109.47496 * 179.97438 * 12 2 1 14 14 C 1.53000 * 109.46736 * 299.99838 * 12 2 1 15 15 N 1.46496 * 109.47255 * 304.99730 * 14 12 2 16 16 C 1.36938 * 119.99746 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00370 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99818 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00236 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46692 * 60.00174 * 20 18 16 22 22 H 1.48499 * 109.46935 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47094 * 300.00103 * 20 18 16 24 24 C 1.53001 * 109.47375 * 59.99627 * 12 2 1 25 25 C 1.53000 * 117.50223 * 180.02562 * 24 12 2 26 26 C 1.52997 * 117.49889 * 111.37624 * 24 12 2 27 27 H 1.08997 * 109.47121 * 269.99594 * 1 2 3 28 28 H 1.09001 * 109.47295 * 29.99767 * 1 2 3 29 29 H 1.09001 * 109.47002 * 149.99830 * 1 2 3 30 30 H 1.09004 * 110.96944 * 24.54114 * 7 5 3 31 31 H 1.09004 * 110.96980 * 148.29824 * 7 5 3 32 32 H 1.09004 * 110.48206 * 216.52522 * 8 7 5 33 33 H 1.08994 * 110.60428 * 93.93856 * 8 7 5 34 34 H 0.97008 * 124.35142 * 180.38850 * 11 9 8 35 35 H 1.09004 * 109.47221 * 65.00394 * 14 12 2 36 36 H 1.09001 * 109.46947 * 184.99775 * 14 12 2 37 37 H 0.96994 * 119.99967 * 0.02562 * 15 14 12 38 38 H 0.97001 * 120.00226 * 179.97438 * 19 18 16 39 39 H 1.09002 * 115.55911 * 325.69052 * 24 12 2 40 40 H 1.08990 * 117.49990 * 145.01974 * 25 24 12 41 41 H 1.09004 * 117.49237 * 359.97438 * 25 24 12 42 42 H 1.08999 * 117.49685 * 0.02562 * 26 24 12 43 43 H 1.08999 * 117.52022 * 214.97106 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.5140 2.4039 0.6518 7 6 0.9537 2.8410 -1.4361 8 6 2.1221 3.7442 -1.8944 9 6 2.6951 4.2919 -0.6058 10 8 3.4373 5.2478 -0.5266 11 7 2.2622 3.5647 0.4385 12 6 2.1975 -1.2687 -0.0006 13 1 3.2692 -1.0696 -0.0009 14 6 1.8279 -2.0715 1.2484 15 7 2.0707 -1.2573 2.4418 16 6 1.8103 -1.7697 3.6847 17 1 1.4263 -2.7741 3.7852 18 6 2.0399 -0.9981 4.8156 19 7 2.5074 0.2262 4.6931 20 14 1.6854 -1.6971 6.5112 21 1 2.5144 -2.9096 6.7299 22 1 2.0117 -0.6809 7.5437 23 1 0.2478 -2.0563 6.6078 24 6 1.8279 -2.0705 -1.2501 25 6 2.4924 -3.4362 -1.4355 26 6 2.9096 -2.2560 -2.3161 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 0.8798 1.9514 -2.0617 31 1 0.0132 3.3921 -1.4315 32 1 1.7536 4.5549 -2.5230 33 1 2.8721 3.1601 -2.4275 34 1 2.4991 3.7393 1.3628 35 1 0.7741 -2.3469 1.2046 36 1 2.4376 -2.9738 1.2939 37 1 2.4153 -0.3551 2.3515 38 1 2.6675 0.7656 5.4833 39 1 0.7984 -1.9616 -1.5913 40 1 1.9003 -4.2252 -1.8988 41 1 3.1933 -3.7631 -0.6673 42 1 3.8847 -1.8071 -2.1270 43 1 2.5922 -2.2692 -3.3588 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485832148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:09 Heat of formation + Delta-G solvation = -22.618852 kcal Electronic energy + Delta-G solvation = -25054.431182 eV Core-core repulsion = 21522.131094 eV Total energy + Delta-G solvation = -3532.300088 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.87707 -39.27251 -37.59195 -35.96248 -35.21732 -34.07004 -31.45561 -31.19197 -29.00952 -27.49205 -26.51880 -24.28673 -22.89542 -22.38784 -21.59748 -20.64657 -20.14689 -19.01501 -17.58117 -17.19364 -17.05857 -16.52068 -15.46835 -15.22175 -14.95876 -14.70401 -14.32144 -14.02006 -13.65773 -13.54423 -13.35018 -13.06028 -13.05020 -12.95940 -12.66435 -12.31928 -11.94539 -11.65991 -11.51549 -11.47923 -11.40133 -11.11269 -10.85690 -10.74619 -10.38275 -10.20013 -10.00866 -9.86714 -9.79732 -9.68662 -8.92928 -8.82238 -8.32600 -6.93862 -5.77189 -3.06517 2.59618 2.80123 3.08006 3.41638 3.46465 3.47781 3.51719 3.88436 4.26277 4.31581 4.48704 4.55537 4.73746 4.78767 4.98183 5.03581 5.06362 5.23332 5.29152 5.33544 5.46727 5.53753 5.58464 5.59142 5.67468 5.70002 5.75612 5.85384 5.94969 6.02677 6.17767 6.19572 6.26685 6.43233 6.68604 6.77171 6.92976 7.10969 7.61331 7.66898 8.30286 8.40465 8.43134 9.52113 10.09924 10.45206 11.44900 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011435 B = 0.005851 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.005181 B = 4784.631395 C = 6598.749126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.591 5.591 3 C 0.506 3.494 4 O -0.526 6.526 5 C 0.115 3.885 6 H 0.114 0.886 7 C -0.120 4.120 8 C -0.156 4.156 9 C 0.527 3.473 10 O -0.538 6.538 11 N -0.703 5.703 12 C 0.162 3.838 13 H 0.100 0.900 14 C 0.149 3.851 15 N -0.728 5.728 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.287 1.287 24 C -0.159 4.159 25 C -0.170 4.170 26 C -0.179 4.179 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.419 0.581 35 H 0.022 0.978 36 H 0.028 0.972 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 0.112 -16.722 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.323 5.323 3 C 0.291 3.709 4 O -0.401 6.401 5 C 0.004 3.996 6 H 0.132 0.868 7 C -0.158 4.158 8 C -0.196 4.196 9 C 0.313 3.687 10 O -0.415 6.415 11 N -0.358 5.358 12 C 0.059 3.941 13 H 0.118 0.882 14 C 0.020 3.980 15 N -0.372 5.372 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.178 4.178 25 C -0.208 4.208 26 C -0.216 4.216 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.259 0.741 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.035 0.515 -16.644 18.077 hybrid contribution -0.128 -0.301 1.546 1.580 sum -7.163 0.214 -15.098 16.713 Atomic orbital electron populations 1.21834 0.79851 1.02253 1.02971 1.47562 1.06781 1.05336 1.72661 1.20763 0.88312 0.85251 0.76525 1.90725 1.13675 1.86844 1.48822 1.21595 0.93535 0.86004 0.98420 0.86790 1.22594 0.98915 1.00993 0.93301 1.22335 0.99083 1.01108 0.97050 1.20755 0.79366 0.81822 0.86743 1.90740 1.36390 1.27930 1.86466 1.45917 1.50276 1.29224 1.10346 1.20924 0.97852 0.82226 0.93127 0.88211 1.20923 0.97794 0.93467 0.85811 1.42277 1.78856 1.15741 1.00343 1.19153 1.36404 0.98021 0.83669 0.91330 1.24735 1.01993 0.96328 0.97742 1.69663 1.50922 1.08728 1.28526 0.86287 0.77855 0.77795 0.84326 1.21300 1.21722 1.21339 1.22545 0.97985 0.99486 0.97821 1.22925 1.03765 0.91142 1.02947 1.23013 0.99695 1.02976 0.95888 0.91341 0.91558 0.90987 0.88748 0.88671 0.87837 0.87603 0.74129 0.96050 0.95415 0.78090 0.93499 0.87615 0.88815 0.88322 0.88726 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 9.05 59.85 0.54 1.36 16 2 N -0.59 -8.63 2.24 -173.94 -0.39 -9.02 16 3 C 0.51 8.18 6.54 -10.99 -0.07 8.10 16 4 O -0.53 -10.84 15.91 5.56 0.09 -10.75 16 5 C 0.11 1.42 2.97 -68.17 -0.20 1.22 16 6 H 0.11 1.24 7.23 -51.93 -0.38 0.86 16 7 C -0.12 -1.01 5.76 -25.10 -0.14 -1.16 16 8 C -0.16 -1.64 6.85 -26.75 -0.18 -1.82 16 9 C 0.53 8.06 8.43 -10.86 -0.09 7.97 16 10 O -0.54 -10.35 18.03 5.56 0.10 -10.25 16 11 N -0.70 -10.33 5.47 -53.88 -0.29 -10.62 16 12 C 0.16 2.60 2.42 -67.93 -0.16 2.44 16 13 H 0.10 1.91 6.65 -51.93 -0.35 1.56 16 14 C 0.15 2.86 5.32 -4.04 -0.02 2.84 16 15 N -0.73 -18.10 5.43 -59.91 -0.33 -18.42 16 16 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.16 -1.93 5.15 -90.62 -0.47 -2.40 16 25 C -0.17 -1.91 9.79 -26.71 -0.26 -2.17 16 26 C -0.18 -2.00 10.18 -26.71 -0.27 -2.27 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.50 5.73 -51.93 -0.30 0.21 16 29 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 30 H 0.09 0.68 7.68 -51.93 -0.40 0.29 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.42 6.45 8.96 -40.82 -0.37 6.09 16 35 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 36 H 0.03 0.55 7.47 -51.93 -0.39 0.16 16 37 H 0.39 10.41 7.06 -40.82 -0.29 10.12 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.11 1.11 6.59 -51.93 -0.34 0.77 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.21 7.66 -51.93 -0.40 0.81 16 42 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -35.80 351.32 -7.85 -43.65 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.44 Total: 13.32 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -1.58 Total: 6.88 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.29 Total: -65.38 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.19 Total: -21.00 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.80 -7.85 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485832148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.033 kcal (2) G-P(sol) polarization free energy of solvation -35.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds