Wall clock time and date at job start Tue Mar 31 2020 03:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99846 * 2 1 4 4 O 1.21279 * 119.99852 * 180.02562 * 3 2 1 5 5 C 1.50692 * 119.99968 * 0.02562 * 3 2 1 6 6 H 1.09001 * 110.22250 * 39.52411 * 5 3 2 7 7 C 1.54479 * 110.24875 * 277.49681 * 5 3 2 8 8 C 1.54621 * 101.76733 * 266.42136 * 7 5 3 9 9 C 1.51282 * 104.19629 * 335.19934 * 8 7 5 10 10 O 1.21281 * 124.94504 * 196.23592 * 9 8 7 11 11 N 1.34414 * 110.11332 * 16.25270 * 9 8 7 12 12 C 1.46499 * 120.00105 * 180.02562 * 2 1 3 13 13 H 1.08996 * 109.47496 * 179.97438 * 12 2 1 14 14 C 1.53000 * 109.46736 * 299.99838 * 12 2 1 15 15 N 1.46496 * 109.47255 * 304.99730 * 14 12 2 16 16 C 1.36938 * 119.99746 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00370 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99818 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00236 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46692 * 60.00174 * 20 18 16 22 22 H 1.48499 * 109.46935 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47094 * 300.00103 * 20 18 16 24 24 C 1.53001 * 109.47375 * 59.99627 * 12 2 1 25 25 C 1.53000 * 117.50223 * 180.02562 * 24 12 2 26 26 C 1.52997 * 117.49889 * 111.37624 * 24 12 2 27 27 H 1.08997 * 109.47121 * 269.99594 * 1 2 3 28 28 H 1.09001 * 109.47295 * 29.99767 * 1 2 3 29 29 H 1.09001 * 109.47002 * 149.99830 * 1 2 3 30 30 H 1.09004 * 110.96944 * 24.54114 * 7 5 3 31 31 H 1.09004 * 110.96980 * 148.29824 * 7 5 3 32 32 H 1.09004 * 110.48206 * 216.52522 * 8 7 5 33 33 H 1.08994 * 110.60428 * 93.93856 * 8 7 5 34 34 H 0.97008 * 124.35142 * 180.38850 * 11 9 8 35 35 H 1.09004 * 109.47221 * 65.00394 * 14 12 2 36 36 H 1.09001 * 109.46947 * 184.99775 * 14 12 2 37 37 H 0.96994 * 119.99967 * 0.02562 * 15 14 12 38 38 H 0.97001 * 120.00226 * 179.97438 * 19 18 16 39 39 H 1.09002 * 115.55911 * 325.69052 * 24 12 2 40 40 H 1.08990 * 117.49990 * 145.01974 * 25 24 12 41 41 H 1.09004 * 117.49237 * 359.97438 * 25 24 12 42 42 H 1.08999 * 117.49685 * 0.02562 * 26 24 12 43 43 H 1.08999 * 117.52022 * 214.97106 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.5140 2.4039 0.6518 7 6 0.9537 2.8410 -1.4361 8 6 2.1221 3.7442 -1.8944 9 6 2.6951 4.2919 -0.6058 10 8 3.4373 5.2478 -0.5266 11 7 2.2622 3.5647 0.4385 12 6 2.1975 -1.2687 -0.0006 13 1 3.2692 -1.0696 -0.0009 14 6 1.8279 -2.0715 1.2484 15 7 2.0707 -1.2573 2.4418 16 6 1.8103 -1.7697 3.6847 17 1 1.4263 -2.7741 3.7852 18 6 2.0399 -0.9981 4.8156 19 7 2.5074 0.2262 4.6931 20 14 1.6854 -1.6971 6.5112 21 1 2.5144 -2.9096 6.7299 22 1 2.0117 -0.6809 7.5437 23 1 0.2478 -2.0563 6.6078 24 6 1.8279 -2.0705 -1.2501 25 6 2.4924 -3.4362 -1.4355 26 6 2.9096 -2.2560 -2.3161 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 0.8798 1.9514 -2.0617 31 1 0.0132 3.3921 -1.4315 32 1 1.7536 4.5549 -2.5230 33 1 2.8721 3.1601 -2.4275 34 1 2.4991 3.7393 1.3628 35 1 0.7741 -2.3469 1.2046 36 1 2.4376 -2.9738 1.2939 37 1 2.4153 -0.3551 2.3515 38 1 2.6675 0.7656 5.4833 39 1 0.7984 -1.9616 -1.5913 40 1 1.9003 -4.2252 -1.8988 41 1 3.1933 -3.7631 -0.6673 42 1 3.8847 -1.8071 -2.1270 43 1 2.5922 -2.2692 -3.3588 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485832148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:07 Heat of formation + Delta-G solvation = -49.770885 kcal Electronic energy + Delta-G solvation = -25055.608582 eV Core-core repulsion = 21522.131094 eV Total energy + Delta-G solvation = -3533.477489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00399 -40.47336 -38.77217 -37.15292 -36.57059 -35.75224 -33.21283 -32.25665 -30.43487 -28.69263 -27.63327 -26.01941 -24.10924 -23.38279 -22.86220 -21.73040 -21.24520 -20.24769 -19.14134 -18.70079 -18.24745 -17.68359 -16.74626 -16.49053 -16.37525 -16.05103 -15.56903 -15.37312 -15.02988 -14.81373 -14.73771 -14.57502 -14.20842 -13.91602 -13.83582 -13.42007 -13.17295 -12.93947 -12.85060 -12.72405 -12.46597 -12.37264 -12.21781 -12.19385 -12.13672 -11.78405 -11.36646 -11.20988 -11.01414 -10.95942 -10.88234 -10.05028 -9.54006 -9.00520 -7.94897 -5.24270 1.40432 1.44984 1.48142 1.54275 1.61306 1.98379 2.41272 2.54144 2.92625 3.30435 3.38343 3.48764 3.52069 3.67037 3.92589 4.01935 4.10766 4.15967 4.25842 4.34146 4.42254 4.43718 4.49716 4.59897 4.76297 4.78715 4.82801 4.91313 4.92380 5.03206 5.05694 5.09138 5.12695 5.30096 5.32294 5.46883 5.60862 5.71157 5.95501 6.24762 6.46374 7.10340 7.22481 7.31914 8.08066 8.31154 9.27667 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011435 B = 0.005851 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.005181 B = 4784.631395 C = 6598.749126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.587 5.587 3 C 0.496 3.504 4 O -0.584 6.584 5 C 0.113 3.887 6 H 0.134 0.866 7 C -0.103 4.103 8 C -0.148 4.148 9 C 0.513 3.487 10 O -0.590 6.590 11 N -0.711 5.711 12 C 0.170 3.830 13 H 0.058 0.942 14 C 0.148 3.852 15 N -0.740 5.740 16 C -0.243 4.243 17 H 0.077 0.923 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.973 3.027 21 H -0.282 1.282 22 H -0.300 1.300 23 H -0.272 1.272 24 C -0.159 4.159 25 C -0.168 4.168 26 C -0.172 4.172 27 H 0.044 0.956 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.408 0.592 35 H 0.039 0.961 36 H 0.022 0.978 37 H 0.370 0.630 38 H 0.248 0.752 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 -1.234 -18.849 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.319 5.319 3 C 0.283 3.717 4 O -0.464 6.464 5 C 0.004 3.996 6 H 0.152 0.848 7 C -0.140 4.140 8 C -0.187 4.187 9 C 0.301 3.699 10 O -0.471 6.471 11 N -0.362 5.362 12 C 0.065 3.935 13 H 0.077 0.923 14 C 0.021 3.979 15 N -0.383 5.383 16 C -0.374 4.374 17 H 0.095 0.905 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.198 1.198 24 C -0.178 4.178 25 C -0.205 4.205 26 C -0.209 4.209 27 H 0.062 0.938 28 H 0.127 0.873 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.245 0.755 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.202 0.798 38 H 0.057 0.943 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.313 -0.913 -18.810 21.471 hybrid contribution 0.908 0.027 2.217 2.396 sum -9.405 -0.887 -16.593 19.094 Atomic orbital electron populations 1.22127 0.77178 1.05661 1.02468 1.47678 1.08343 1.04372 1.71470 1.21556 0.87920 0.86808 0.75374 1.90700 1.16350 1.87742 1.51600 1.21896 0.92750 0.83212 1.01772 0.84834 1.22770 0.99449 1.01815 0.90015 1.22385 0.99649 1.02205 0.94509 1.21707 0.78573 0.81053 0.88537 1.90695 1.38704 1.30281 1.87452 1.46176 1.50406 1.29646 1.10013 1.20633 0.95954 0.83204 0.93682 0.92348 1.21093 0.98360 0.93050 0.85375 1.42478 1.78704 1.15621 1.01447 1.19587 1.34841 0.98157 0.84859 0.90471 1.25553 1.02830 0.96770 1.01519 1.69846 1.52959 1.10183 1.28915 0.85225 0.78283 0.76756 0.79552 1.20816 1.22604 1.19778 1.22464 0.99677 0.99437 0.96197 1.23003 1.03457 0.91527 1.02524 1.23026 0.98344 1.02390 0.97100 0.93750 0.87332 0.88536 0.86497 0.84529 0.84871 0.87972 0.75477 0.94280 0.95985 0.79798 0.94294 0.84589 0.86055 0.90261 0.91003 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 9.05 127.77 1.16 2.41 16 2 N -0.59 -16.49 2.24 -822.60 -1.85 -18.34 16 3 C 0.50 16.02 6.54 87.65 0.57 16.59 16 4 O -0.58 -25.38 15.91 -3.03 -0.05 -25.43 16 5 C 0.11 2.63 2.97 44.69 0.13 2.76 16 6 H 0.13 2.59 7.23 -2.39 -0.02 2.57 16 7 C -0.10 -1.31 5.76 31.65 0.18 -1.13 16 8 C -0.15 -2.78 6.85 30.59 0.21 -2.57 16 9 C 0.51 15.87 8.43 87.90 0.74 16.61 16 10 O -0.59 -23.70 18.03 -3.03 -0.05 -23.75 16 11 N -0.71 -21.36 5.47 -442.98 -2.42 -23.78 16 12 C 0.17 5.40 2.42 44.99 0.11 5.51 16 13 H 0.06 2.36 6.65 -2.39 -0.02 2.34 16 14 C 0.15 5.69 5.32 86.38 0.46 6.15 16 15 N -0.74 -37.52 5.43 -343.45 -1.87 -39.39 16 16 C -0.24 -13.45 9.99 84.03 0.84 -12.61 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 18 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 19 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 20 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C -0.16 -3.46 5.15 -10.79 -0.06 -3.51 16 25 C -0.17 -3.40 9.79 30.61 0.30 -3.10 16 26 C -0.17 -3.49 10.18 30.61 0.31 -3.18 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.11 1.10 5.73 -2.39 -0.01 1.09 16 29 H 0.10 1.35 6.43 -2.39 -0.02 1.33 16 30 H 0.12 1.06 7.68 -2.38 -0.02 1.04 16 31 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.41 13.46 8.96 -92.70 -0.83 12.63 16 35 H 0.04 1.39 7.84 -2.38 -0.02 1.37 16 36 H 0.02 0.88 7.47 -2.39 -0.02 0.86 16 37 H 0.37 20.82 7.06 -92.71 -0.65 20.16 16 38 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.14 2.18 6.59 -2.39 -0.02 2.16 16 40 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 1.92 7.66 -2.38 -0.02 1.90 16 42 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 43 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -84.17 351.32 1.06 -83.11 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.45 Total: 39.11 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 5.43 Total: 20.12 kcal Atomic # 7 Polarization: -135.54 SS G_CDS: -5.85 Total: -141.39 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.10 Total: -49.18 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -84.17 1.06 -83.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485832148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.340 kcal (2) G-P(sol) polarization free energy of solvation -84.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds