Wall clock time and date at job start Tue Mar 31 2020 03:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00467 * 2 1 4 4 O 1.21283 * 119.99966 * 354.93713 * 3 2 1 5 5 C 1.50697 * 120.00330 * 174.93748 * 3 2 1 6 6 C 1.50703 * 115.54958 * 39.97864 * 5 3 2 7 7 O 1.21284 * 119.99660 * 260.73215 * 6 5 3 8 8 N 1.34778 * 120.00219 * 80.73179 * 6 5 3 9 9 C 1.46494 * 119.99849 * 185.11309 * 8 6 5 10 10 C 1.53002 * 109.47056 * 180.02562 * 9 8 6 11 11 H 1.08998 * 112.84808 * 316.19403 * 10 9 8 12 12 C 1.53775 * 113.61514 * 87.50559 * 10 9 8 13 13 C 1.53780 * 87.08490 * 139.98245 * 12 10 9 14 14 H 1.08997 * 113.61350 * 89.11037 * 13 12 10 15 15 N 1.46494 * 113.68891 * 220.01023 * 13 12 10 16 16 C 1.36945 * 119.99758 * 252.53076 * 15 13 12 17 17 H 1.08000 * 119.99869 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00241 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00344 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99558 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47041 * 90.00524 * 20 18 16 22 22 H 1.48501 * 109.47060 * 210.00097 * 20 18 16 23 23 H 1.48490 * 109.47483 * 330.00218 * 20 18 16 24 24 C 1.53778 * 113.61235 * 185.00284 * 10 9 8 25 25 C 1.53004 * 117.49869 * 185.64270 * 5 3 2 26 26 C 1.53001 * 60.02999 * 107.50628 * 25 5 3 27 27 H 1.08998 * 109.46938 * 300.00776 * 1 2 3 28 28 H 1.09000 * 109.46817 * 60.00095 * 1 2 3 29 29 H 1.08994 * 109.47138 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99827 * 179.97438 * 2 1 3 31 31 H 0.96998 * 119.99578 * 5.11041 * 8 6 5 32 32 H 1.08998 * 109.47410 * 299.99987 * 9 8 6 33 33 H 1.09006 * 109.47222 * 59.99902 * 9 8 6 34 34 H 1.09000 * 113.60993 * 254.52988 * 12 10 9 35 35 H 1.08998 * 113.61933 * 25.43074 * 12 10 9 36 36 H 0.97000 * 120.00762 * 72.53139 * 15 13 12 37 37 H 0.96996 * 120.00017 * 180.02562 * 19 18 16 38 38 H 1.08993 * 113.61876 * 334.56405 * 24 10 9 39 39 H 1.08998 * 113.61596 * 105.47313 * 24 10 9 40 40 H 1.08997 * 117.50107 * 215.00108 * 25 5 3 41 41 H 1.08995 * 117.49736 * 0.02562 * 25 5 3 42 42 H 1.08998 * 117.50640 * 107.50356 * 26 25 5 43 43 H 1.09005 * 117.49573 * 252.52492 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5362 2.2154 -0.0927 5 6 3.6415 1.1696 0.1152 6 6 4.3545 0.0913 -0.6594 7 8 4.7283 -0.9148 -0.0944 8 7 4.5769 0.2449 -1.9798 9 6 5.1686 -0.8484 -2.7549 10 6 5.3136 -0.4174 -4.2158 11 1 4.4321 0.1003 -4.5939 12 6 6.6341 0.3116 -4.5148 13 6 6.6759 -0.4716 -5.8376 14 1 6.1677 0.0323 -6.6596 15 7 8.0145 -0.9436 -6.2001 16 6 8.6947 -0.3491 -7.2294 17 1 8.2443 0.4678 -7.7736 18 6 9.9629 -0.7966 -7.5733 19 7 10.6168 -0.2250 -8.5623 20 14 10.7420 -2.2092 -6.6315 21 1 10.3829 -3.4953 -7.2816 22 1 12.2184 -2.0497 -6.6319 23 1 10.2442 -2.2058 -5.2326 24 6 5.8140 -1.5385 -5.1419 25 6 4.3380 2.5260 0.2425 26 6 4.2474 1.5965 1.4544 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9500 -0.8401 0.0004 31 1 4.3451 1.0792 -2.4167 32 1 6.1505 -1.0916 -2.3491 33 1 4.5240 -1.7255 -2.6967 34 1 6.5185 1.3873 -4.6478 35 1 7.4407 0.0532 -3.8287 36 1 8.4192 -1.6771 -5.7111 37 1 11.5028 -0.5380 -8.8028 38 1 6.3963 -2.3027 -4.6273 39 1 5.0364 -1.9564 -5.7812 40 1 5.3119 2.6383 -0.2338 41 1 3.7094 3.4164 0.2434 42 1 5.1617 1.0974 1.7755 43 1 3.5589 1.8754 2.2522 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488778316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:16 Heat of formation + Delta-G solvation = -14.469148 kcal Electronic energy + Delta-G solvation = -23444.108011 eV Core-core repulsion = 19912.161320 eV Total energy + Delta-G solvation = -3531.946690 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.04384 -39.47761 -38.61712 -36.47605 -34.99873 -34.87193 -33.36875 -30.80858 -28.45973 -27.65480 -25.26984 -24.73117 -23.56443 -22.87654 -21.90435 -21.06772 -20.15754 -19.40685 -18.48677 -17.46144 -16.71221 -16.36589 -16.15078 -15.63714 -15.40333 -15.09970 -14.73658 -14.62258 -14.32945 -13.92869 -13.40112 -13.27518 -13.23827 -12.71408 -12.70615 -12.29490 -12.04516 -12.03644 -11.68660 -11.66658 -11.54210 -11.07577 -10.91807 -10.56650 -10.52523 -10.31421 -10.19477 -9.95361 -9.85102 -9.59403 -9.57326 -9.24741 -8.93402 -7.30722 -5.81425 -3.17270 1.98030 2.18676 2.69036 2.73801 3.34859 3.37744 3.39633 3.42991 4.20922 4.24631 4.37621 4.39322 4.55202 4.78118 4.79072 4.80898 5.04686 5.07798 5.15732 5.24012 5.32621 5.36571 5.37292 5.42774 5.57454 5.63504 5.67929 5.74640 5.76219 5.91500 6.06938 6.11876 6.16549 6.26607 6.45088 6.62160 6.92578 6.96764 7.20936 7.70850 7.87955 7.94813 8.38318 9.15973 9.88639 10.08167 11.36767 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.002751 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.223001 B =10175.372434 C =10342.450861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.561 3.439 4 O -0.529 6.529 5 C -0.203 4.203 6 C 0.549 3.451 7 O -0.531 6.531 8 N -0.714 5.714 9 C 0.131 3.869 10 C -0.128 4.128 11 H 0.092 0.908 12 C -0.161 4.161 13 C 0.172 3.828 14 H 0.084 0.916 15 N -0.737 5.737 16 C -0.249 4.249 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.145 4.145 25 C -0.131 4.131 26 C -0.120 4.120 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.407 0.593 31 H 0.404 0.596 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.137 1.162 19.537 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.380 5.380 3 C 0.346 3.654 4 O -0.406 6.406 5 C -0.209 4.209 6 C 0.332 3.668 7 O -0.407 6.407 8 N -0.365 5.365 9 C 0.008 3.992 10 C -0.147 4.147 11 H 0.110 0.890 12 C -0.202 4.202 13 C 0.061 3.939 14 H 0.102 0.898 15 N -0.376 5.376 16 C -0.379 4.379 17 H 0.109 0.891 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.715 3.285 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.185 4.185 25 C -0.169 4.169 26 C -0.157 4.157 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.241 0.759 31 H 0.239 0.761 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.230 1.297 19.625 27.507 hybrid contribution 0.735 -1.099 0.377 1.375 sum -18.495 0.197 20.002 27.243 Atomic orbital electron populations 1.21596 0.78921 1.02626 1.02522 1.45747 1.08062 1.08784 1.75377 1.18983 0.86802 0.83827 0.75753 1.90725 1.69270 1.31435 1.49122 1.21524 0.93047 1.00417 1.05961 1.19163 0.79095 0.86351 0.82141 1.90739 1.51001 1.29917 1.69081 1.46042 1.63168 1.18993 1.08269 1.21512 0.98628 0.88727 0.90360 1.22648 0.99184 1.00120 0.92740 0.89016 1.23924 0.94991 0.99670 1.01631 1.21498 0.86141 0.92938 0.93364 0.89765 1.42759 1.14918 1.40503 1.39465 1.19136 0.97877 1.13739 1.07142 0.89131 1.24700 0.97060 0.99207 0.98132 1.69700 1.13920 1.43751 1.30620 0.86555 0.78917 0.83245 0.79833 1.21010 1.21686 1.20301 1.23472 0.99882 0.97266 0.97866 1.23174 1.01622 0.91695 1.00366 1.23045 1.02542 1.00589 0.89573 0.92033 0.91847 0.90343 0.75901 0.76095 0.90967 0.91571 0.92209 0.90421 0.80448 0.92997 0.90305 0.91569 0.87058 0.86330 0.86851 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.71 59.85 0.64 1.20 16 2 N -0.73 -6.12 5.65 -67.08 -0.38 -6.50 16 3 C 0.56 5.85 7.33 -10.99 -0.08 5.77 16 4 O -0.53 -6.93 16.28 5.56 0.09 -6.84 16 5 C -0.20 -1.91 2.36 -156.77 -0.37 -2.28 16 6 C 0.55 6.07 6.28 -10.98 -0.07 6.00 16 7 O -0.53 -7.48 17.02 5.55 0.09 -7.38 16 8 N -0.71 -7.22 5.55 -60.29 -0.33 -7.56 16 9 C 0.13 1.48 5.52 -4.04 -0.02 1.46 16 10 C -0.13 -1.51 3.75 -89.81 -0.34 -1.85 16 11 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 12 C -0.16 -2.43 7.43 -25.92 -0.19 -2.62 16 13 C 0.17 3.08 4.48 -67.12 -0.30 2.78 16 14 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 15 N -0.74 -16.93 5.21 -52.64 -0.27 -17.21 16 16 C -0.25 -6.90 10.45 -15.06 -0.16 -7.06 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 20 Si 0.88 21.89 27.73 -169.99 -4.71 17.18 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 24 C -0.15 -2.04 7.39 -25.92 -0.19 -2.23 16 25 C -0.13 -1.03 9.74 -26.73 -0.26 -1.29 16 26 C -0.12 -0.95 9.87 -26.69 -0.26 -1.21 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.41 3.16 8.22 -40.82 -0.34 2.83 16 31 H 0.40 3.51 8.48 -40.82 -0.35 3.17 16 32 H 0.07 0.93 7.84 -51.93 -0.41 0.53 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.27 7.89 -51.93 -0.41 0.86 16 36 H 0.36 8.22 5.79 -40.82 -0.24 7.98 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.12 0.95 7.68 -51.93 -0.40 0.55 16 42 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -34.08 362.82 -7.77 -41.84 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.79 Total: 10.58 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.70 Total: -1.30 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.21 Total: -59.54 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.18 Total: -14.23 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.08 -7.77 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488778316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.374 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds