Wall clock time and date at job start Tue Mar 31 2020 03:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00467 * 2 1 4 4 O 1.21283 * 119.99966 * 354.93713 * 3 2 1 5 5 C 1.50697 * 120.00330 * 174.93748 * 3 2 1 6 6 C 1.50703 * 115.54958 * 39.97864 * 5 3 2 7 7 O 1.21284 * 119.99660 * 260.73215 * 6 5 3 8 8 N 1.34778 * 120.00219 * 80.73179 * 6 5 3 9 9 C 1.46494 * 119.99849 * 185.11309 * 8 6 5 10 10 C 1.53002 * 109.47056 * 180.02562 * 9 8 6 11 11 H 1.08998 * 112.84808 * 316.19403 * 10 9 8 12 12 C 1.53775 * 113.61514 * 87.50559 * 10 9 8 13 13 C 1.53780 * 87.08490 * 139.98245 * 12 10 9 14 14 H 1.08997 * 113.61350 * 89.11037 * 13 12 10 15 15 N 1.46494 * 113.68891 * 220.01023 * 13 12 10 16 16 C 1.36945 * 119.99758 * 252.53076 * 15 13 12 17 17 H 1.08000 * 119.99869 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00241 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00344 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99558 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47041 * 90.00524 * 20 18 16 22 22 H 1.48501 * 109.47060 * 210.00097 * 20 18 16 23 23 H 1.48490 * 109.47483 * 330.00218 * 20 18 16 24 24 C 1.53778 * 113.61235 * 185.00284 * 10 9 8 25 25 C 1.53004 * 117.49869 * 185.64270 * 5 3 2 26 26 C 1.53001 * 60.02999 * 107.50628 * 25 5 3 27 27 H 1.08998 * 109.46938 * 300.00776 * 1 2 3 28 28 H 1.09000 * 109.46817 * 60.00095 * 1 2 3 29 29 H 1.08994 * 109.47138 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99827 * 179.97438 * 2 1 3 31 31 H 0.96998 * 119.99578 * 5.11041 * 8 6 5 32 32 H 1.08998 * 109.47410 * 299.99987 * 9 8 6 33 33 H 1.09006 * 109.47222 * 59.99902 * 9 8 6 34 34 H 1.09000 * 113.60993 * 254.52988 * 12 10 9 35 35 H 1.08998 * 113.61933 * 25.43074 * 12 10 9 36 36 H 0.97000 * 120.00762 * 72.53139 * 15 13 12 37 37 H 0.96996 * 120.00017 * 180.02562 * 19 18 16 38 38 H 1.08993 * 113.61876 * 334.56405 * 24 10 9 39 39 H 1.08998 * 113.61596 * 105.47313 * 24 10 9 40 40 H 1.08997 * 117.50107 * 215.00108 * 25 5 3 41 41 H 1.08995 * 117.49736 * 0.02562 * 25 5 3 42 42 H 1.08998 * 117.50640 * 107.50356 * 26 25 5 43 43 H 1.09005 * 117.49573 * 252.52492 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5362 2.2154 -0.0927 5 6 3.6415 1.1696 0.1152 6 6 4.3545 0.0913 -0.6594 7 8 4.7283 -0.9148 -0.0944 8 7 4.5769 0.2449 -1.9798 9 6 5.1686 -0.8484 -2.7549 10 6 5.3136 -0.4174 -4.2158 11 1 4.4321 0.1003 -4.5939 12 6 6.6341 0.3116 -4.5148 13 6 6.6759 -0.4716 -5.8376 14 1 6.1677 0.0323 -6.6596 15 7 8.0145 -0.9436 -6.2001 16 6 8.6947 -0.3491 -7.2294 17 1 8.2443 0.4678 -7.7736 18 6 9.9629 -0.7966 -7.5733 19 7 10.6168 -0.2250 -8.5623 20 14 10.7420 -2.2092 -6.6315 21 1 10.3829 -3.4953 -7.2816 22 1 12.2184 -2.0497 -6.6319 23 1 10.2442 -2.2058 -5.2326 24 6 5.8140 -1.5385 -5.1419 25 6 4.3380 2.5260 0.2425 26 6 4.2474 1.5965 1.4544 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9500 -0.8401 0.0004 31 1 4.3451 1.0792 -2.4167 32 1 6.1505 -1.0916 -2.3491 33 1 4.5240 -1.7255 -2.6967 34 1 6.5185 1.3873 -4.6478 35 1 7.4407 0.0532 -3.8287 36 1 8.4192 -1.6771 -5.7111 37 1 11.5028 -0.5380 -8.8028 38 1 6.3963 -2.3027 -4.6273 39 1 5.0364 -1.9564 -5.7812 40 1 5.3119 2.6383 -0.2338 41 1 3.7094 3.4164 0.2434 42 1 5.1617 1.0974 1.7755 43 1 3.5589 1.8754 2.2522 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488778316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:15 Heat of formation + Delta-G solvation = -40.553948 kcal Electronic energy + Delta-G solvation = -23445.239132 eV Core-core repulsion = 19912.161320 eV Total energy + Delta-G solvation = -3533.077812 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84250 -40.45572 -39.73584 -37.19114 -36.16578 -35.68160 -35.03418 -32.75722 -29.38971 -28.49282 -26.47502 -25.94263 -24.92773 -23.50188 -22.85355 -22.28830 -21.16080 -20.58887 -19.48978 -19.19634 -17.41790 -17.34379 -17.00030 -16.73755 -16.32859 -16.23768 -15.95464 -15.79084 -15.42539 -15.05041 -14.70867 -14.35609 -14.12177 -13.98498 -13.91806 -13.25368 -13.19143 -13.17147 -13.06020 -12.71446 -12.65653 -12.27874 -12.13493 -11.93386 -11.80552 -11.67799 -11.53627 -11.27280 -11.11860 -10.89867 -10.79800 -10.26838 -10.15259 -9.26656 -8.02772 -5.35293 1.19950 1.35895 1.37667 1.40612 1.47845 1.92490 2.04112 2.48072 2.70382 3.27511 3.48025 3.55288 3.58883 3.64764 3.70591 3.75399 3.86982 4.08255 4.27276 4.36220 4.37265 4.53988 4.56651 4.57755 4.62872 4.74156 4.83450 4.88633 4.95117 4.96798 5.03015 5.07985 5.20234 5.27261 5.29374 5.39648 5.64600 5.78328 6.23173 6.27625 6.39747 6.97010 7.05805 7.08302 7.86518 8.04171 9.18879 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.002751 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.223001 B =10175.372434 C =10342.450861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.723 5.723 3 C 0.560 3.440 4 O -0.561 6.561 5 C -0.211 4.211 6 C 0.554 3.446 7 O -0.562 6.562 8 N -0.706 5.706 9 C 0.136 3.864 10 C -0.099 4.099 11 H 0.115 0.885 12 C -0.156 4.156 13 C 0.144 3.856 14 H 0.076 0.924 15 N -0.744 5.744 16 C -0.232 4.232 17 H 0.058 0.942 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.955 3.045 21 H -0.278 1.278 22 H -0.298 1.298 23 H -0.253 1.253 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.114 4.114 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.411 0.589 31 H 0.413 0.587 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.365 0.635 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 0.117 21.514 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.373 5.373 3 C 0.345 3.655 4 O -0.440 6.440 5 C -0.218 4.218 6 C 0.339 3.661 7 O -0.440 6.440 8 N -0.357 5.357 9 C 0.013 3.987 10 C -0.118 4.118 11 H 0.133 0.867 12 C -0.196 4.196 13 C 0.035 3.965 14 H 0.094 0.906 15 N -0.385 5.385 16 C -0.363 4.363 17 H 0.076 0.924 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.782 3.218 21 H -0.204 1.204 22 H -0.225 1.225 23 H -0.177 1.177 24 C -0.173 4.173 25 C -0.160 4.160 26 C -0.152 4.152 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.246 0.754 31 H 0.249 0.751 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.199 0.801 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.810 0.244 21.639 30.023 hybrid contribution 1.092 -0.707 -0.260 1.327 sum -19.718 -0.463 21.380 29.088 Atomic orbital electron populations 1.21761 0.77748 1.04437 1.02099 1.45814 1.08940 1.08395 1.74156 1.19128 0.87118 0.83856 0.75386 1.90711 1.69893 1.32505 1.50912 1.21447 0.92484 1.00811 1.07009 1.19318 0.78549 0.86100 0.82156 1.90727 1.52399 1.31227 1.69696 1.45959 1.62581 1.19107 1.08068 1.21360 0.98261 0.89343 0.89711 1.22464 0.98206 0.98204 0.92911 0.86670 1.23751 0.96710 0.99866 0.99283 1.21936 0.84466 0.95610 0.94479 0.90621 1.42782 1.16587 1.40610 1.38506 1.19126 0.97778 1.12190 1.07178 0.92398 1.25525 0.97994 1.02643 0.99669 1.69883 1.14391 1.46170 1.33135 0.85413 0.77177 0.79614 0.79580 1.20384 1.22483 1.17723 1.23349 0.99285 0.96862 0.97801 1.23229 1.01694 0.90945 1.00099 1.23140 1.02548 1.00045 0.89427 0.92209 0.92505 0.87474 0.75440 0.75052 0.92393 0.90640 0.91838 0.91490 0.80116 0.93408 0.90170 0.89937 0.86142 0.86363 0.86713 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.71 127.77 1.37 2.28 16 2 N -0.72 -10.85 5.65 -484.54 -2.74 -13.58 16 3 C 0.56 10.82 7.33 87.66 0.64 11.46 16 4 O -0.56 -14.11 16.28 -3.04 -0.05 -14.16 16 5 C -0.21 -3.61 2.36 -53.65 -0.13 -3.73 16 6 C 0.55 11.12 6.28 87.66 0.55 11.67 16 7 O -0.56 -14.83 17.02 -3.04 -0.05 -14.88 16 8 N -0.71 -12.44 5.55 -463.06 -2.57 -15.01 16 9 C 0.14 2.69 5.52 86.38 0.48 3.16 16 10 C -0.10 -2.02 3.75 -10.27 -0.04 -2.06 16 11 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 12 C -0.16 -4.39 7.43 31.12 0.23 -4.16 16 13 C 0.14 4.96 4.48 45.52 0.20 5.17 16 14 H 0.08 2.72 8.10 -2.39 -0.02 2.70 16 15 N -0.74 -33.61 5.21 -320.44 -1.67 -35.28 16 16 C -0.23 -13.03 10.45 84.03 0.88 -12.15 16 17 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 19 N -0.99 -63.18 13.97 21.65 0.30 -62.87 16 20 Si 0.95 45.35 27.73 68.60 1.90 47.25 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 24 C -0.13 -3.37 7.39 31.12 0.23 -3.14 16 25 C -0.12 -1.70 9.74 30.60 0.30 -1.40 16 26 C -0.11 -1.60 9.87 30.62 0.30 -1.30 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.52 16 30 H 0.41 5.56 8.22 -92.71 -0.76 4.80 16 31 H 0.41 5.98 8.48 -92.71 -0.79 5.19 16 32 H 0.06 1.36 7.84 -2.39 -0.02 1.34 16 33 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 2.07 7.89 -2.39 -0.02 2.05 16 36 H 0.37 15.92 5.79 -92.71 -0.54 15.38 16 37 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.08 2.05 8.08 -2.39 -0.02 2.03 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.12 1.70 7.68 -2.39 -0.02 1.68 16 42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -74.92 362.82 -0.49 -75.42 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -1.11 Total: 30.80 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 5.48 Total: 2.31 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -6.67 Total: -126.74 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.10 Total: -29.04 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -74.92 -0.49 -75.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488778316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.862 kcal (2) G-P(sol) polarization free energy of solvation -74.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds