Wall clock time and date at job start Tue Mar 31 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99985 * 2 1 4 4 N 1.34777 * 120.00161 * 180.02562 * 2 1 3 5 5 C 1.47071 * 136.05157 * 359.62556 * 4 2 1 6 6 C 1.53762 * 87.88358 * 152.97035 * 5 4 2 7 7 C 1.50698 * 114.27040 * 139.79574 * 6 5 4 8 8 O 1.21287 * 119.99633 * 266.47564 * 7 6 5 9 9 N 1.34773 * 120.00255 * 86.46573 * 7 6 5 10 10 C 1.46506 * 119.99880 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.46879 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47541 * 64.99700 * 11 10 9 13 13 N 1.46497 * 109.47173 * 304.99491 * 11 10 9 14 14 C 1.36946 * 120.00064 * 155.00187 * 13 11 10 15 15 H 1.07997 * 119.99811 * 0.02562 * 14 13 11 16 16 C 1.38813 * 119.99783 * 180.02562 * 14 13 11 17 17 N 1.31614 * 120.00043 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99564 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47456 * 90.00078 * 18 16 14 20 20 H 1.48504 * 109.47198 * 209.99951 * 18 16 14 21 21 H 1.48503 * 109.47382 * 329.99661 * 18 16 14 22 22 C 1.53002 * 109.47144 * 184.99801 * 11 10 9 23 23 C 1.52996 * 117.50127 * 248.74904 * 22 11 10 24 24 C 1.52995 * 117.50421 * 180.08445 * 22 11 10 25 25 C 1.47065 * 136.06111 * 180.02562 * 4 2 1 26 26 H 1.09002 * 109.47152 * 239.99552 * 1 2 3 27 27 H 1.09001 * 109.46980 * 119.99652 * 1 2 3 28 28 H 1.09004 * 109.47113 * 359.97438 * 1 2 3 29 29 H 1.09001 * 113.46536 * 267.69429 * 5 4 2 30 30 H 1.08993 * 113.47241 * 38.14077 * 5 4 2 31 31 H 1.09002 * 114.38613 * 272.67249 * 6 5 4 32 32 H 0.96997 * 120.00397 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.46761 * 300.00031 * 10 9 7 34 34 H 1.08998 * 109.47145 * 59.99933 * 10 9 7 35 35 H 0.96994 * 120.00370 * 335.00465 * 13 11 10 36 36 H 0.97006 * 119.99962 * 180.02562 * 17 16 14 37 37 H 1.09010 * 115.54928 * 34.41193 * 22 11 10 38 38 H 1.08999 * 117.49945 * 359.97438 * 23 22 11 39 39 H 1.09004 * 117.50171 * 145.01932 * 23 22 11 40 40 H 1.08999 * 117.50572 * 214.97854 * 24 22 11 41 41 H 1.08999 * 117.49575 * 359.97438 * 24 22 11 42 42 H 1.08997 * 113.46365 * 321.86138 * 25 4 2 43 43 H 1.08999 * 113.46854 * 92.24224 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5945 0.0055 6 6 3.1646 -2.8713 -0.6996 7 6 3.8799 -4.1037 -0.2091 8 8 4.7142 -4.0124 0.6664 9 7 3.5925 -5.3072 -0.7433 10 6 4.2876 -6.5053 -0.2660 11 6 3.7796 -7.7285 -1.0317 12 1 4.0510 -7.6374 -2.0835 13 7 2.3222 -7.8110 -0.9089 14 6 1.5899 -8.4602 -1.8669 15 1 2.0869 -8.9117 -2.7127 16 6 0.2088 -8.5378 -1.7507 17 7 -0.3969 -7.9870 -0.7202 18 14 -0.7899 -9.4239 -3.0571 19 1 -0.9272 -10.8559 -2.6887 20 1 -2.1370 -8.8064 -3.1540 21 1 -0.0996 -9.3139 -4.3673 22 6 4.4128 -8.9938 -0.4495 23 6 5.4235 -9.7430 -1.3201 24 6 4.0303 -10.3320 -1.0848 25 6 3.5942 -1.5740 -0.0002 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 -0.5138 -0.8900 28 1 -0.3633 1.0277 0.0005 29 1 1.7666 -3.0226 1.0061 30 1 0.9553 -2.8281 -0.6063 31 1 3.1235 -2.8009 -1.7866 32 1 2.9254 -5.3802 -1.4437 33 1 5.3593 -6.3933 -0.4305 34 1 4.0953 -6.6370 0.7987 35 1 1.8757 -7.4057 -0.1491 36 1 -1.3620 -8.0416 -0.6388 37 1 4.5885 -8.9794 0.6263 38 1 5.6370 -9.3348 -2.3080 39 1 6.2637 -10.2219 -0.8173 40 1 3.9546 -11.1981 -0.4274 41 1 3.3272 -10.3110 -1.9175 42 1 4.2290 -0.9380 -0.6170 43 1 4.0001 -1.7324 0.9989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490654645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:15 Heat of formation + Delta-G solvation = 1.305580 kcal Electronic energy + Delta-G solvation = -23750.878623 eV Core-core repulsion = 20219.615976 eV Total energy + Delta-G solvation = -3531.262647 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88831 -39.14460 -37.85478 -37.22435 -34.73046 -33.47025 -31.44087 -30.94318 -29.09765 -27.86905 -26.08860 -24.42279 -23.28717 -21.98067 -21.72151 -20.22624 -19.49502 -19.09669 -17.76622 -17.14232 -16.97354 -16.04750 -15.66352 -15.30242 -15.24288 -14.99375 -14.40070 -14.32007 -13.76509 -13.58597 -13.20453 -13.11129 -12.92673 -12.74003 -12.61825 -12.47686 -12.14907 -12.00950 -11.44662 -11.25320 -10.94979 -10.93466 -10.90375 -10.78862 -10.20018 -10.13636 -10.00755 -9.77451 -9.54182 -9.36761 -9.06404 -8.89175 -8.74483 -7.13846 -5.90801 -3.20223 2.46610 2.62159 2.69992 3.33151 3.39188 3.41099 3.45886 4.10544 4.34351 4.34513 4.52277 4.71500 4.91219 5.04483 5.06192 5.15372 5.22036 5.31101 5.34025 5.39913 5.44896 5.49840 5.51794 5.53569 5.67837 5.74126 5.82603 5.91026 5.93600 6.00407 6.11249 6.32115 6.48270 6.52624 6.70000 6.79457 6.91004 7.53323 7.57217 7.79615 7.98733 8.26252 8.41156 9.38937 9.92263 10.28592 11.30927 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.004009 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.711152 B = 6982.283590 C = 8770.825549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.542 3.458 3 O -0.550 6.550 4 N -0.650 5.650 5 C 0.120 3.880 6 C -0.152 4.152 7 C 0.524 3.476 8 O -0.549 6.549 9 N -0.706 5.706 10 C 0.118 3.882 11 C 0.193 3.807 12 H 0.055 0.945 13 N -0.717 5.717 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.007 4.007 17 N -0.929 5.929 18 Si 0.902 3.098 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.156 4.156 25 C 0.126 3.874 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.412 0.588 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 7.026 -0.472 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.333 3.667 3 O -0.428 6.428 4 N -0.387 5.387 5 C -0.003 4.003 6 C -0.174 4.174 7 C 0.309 3.691 8 O -0.428 6.428 9 N -0.357 5.357 10 C -0.007 4.007 11 C 0.082 3.918 12 H 0.073 0.927 13 N -0.358 5.358 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.733 3.267 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.181 4.181 23 C -0.234 4.234 24 C -0.193 4.193 25 C 0.003 3.997 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.249 0.751 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.574 7.797 -0.009 9.585 hybrid contribution -1.168 -0.804 -0.658 1.563 sum 4.406 6.993 -0.667 8.292 Atomic orbital electron populations 1.21870 0.90926 1.05328 1.04625 1.20404 0.90175 0.81137 0.75006 1.90721 1.70969 1.30332 1.50778 1.49662 1.09725 1.05680 1.73593 1.22969 0.96988 0.78927 1.01460 1.23153 0.97823 0.93953 1.02512 1.19954 0.82716 0.84266 0.82184 1.90694 1.34236 1.86463 1.31358 1.45978 1.42505 1.06257 1.40944 1.21629 0.95914 0.84096 0.99039 1.20056 0.85928 0.89126 0.96652 0.92668 1.42448 0.99031 1.66196 1.28075 1.19159 0.88736 1.27884 1.01145 0.91143 1.24693 0.96585 1.01147 0.97961 1.69649 1.08825 1.49138 1.30056 0.86281 0.79843 0.79449 0.81123 1.21729 1.21834 1.20782 1.23030 1.01686 0.95598 0.97814 1.22965 0.93208 1.06116 1.01118 1.22780 0.96658 0.95988 1.03893 1.22811 0.83943 0.91177 1.01766 0.89281 0.89179 0.88915 0.88700 0.88800 0.85510 0.75143 0.91534 0.91685 0.78064 0.93468 0.89143 0.89534 0.90076 0.90220 0.87722 0.89968 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.15 36.01 0.37 -1.09 16 2 C 0.54 6.97 8.19 -10.98 -0.09 6.88 16 3 O -0.55 -9.33 17.86 5.56 0.10 -9.23 16 4 N -0.65 -7.68 3.69 -185.02 -0.68 -8.36 16 5 C 0.12 1.24 8.00 -8.36 -0.07 1.17 16 6 C -0.15 -1.66 4.50 -91.11 -0.41 -2.07 16 7 C 0.52 7.28 7.40 -10.99 -0.08 7.20 16 8 O -0.55 -9.36 15.95 5.55 0.09 -9.27 16 9 N -0.71 -9.99 5.39 -60.29 -0.32 -10.31 16 10 C 0.12 1.79 5.22 -4.04 -0.02 1.77 16 11 C 0.19 3.26 2.70 -67.93 -0.18 3.08 16 12 H 0.06 0.95 7.84 -51.93 -0.41 0.55 16 13 N -0.72 -15.05 4.54 -53.43 -0.24 -15.29 16 14 C -0.24 -5.68 8.63 -15.05 -0.13 -5.81 16 15 H 0.07 1.66 6.91 -52.49 -0.36 1.30 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 17 N -0.93 -25.17 13.06 55.49 0.72 -24.44 16 18 Si 0.90 20.49 29.55 -169.99 -5.02 15.47 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.16 -2.59 5.36 -90.62 -0.49 -3.07 16 23 C -0.20 -2.79 10.18 -26.70 -0.27 -3.07 16 24 C -0.16 -2.61 9.78 -26.70 -0.26 -2.87 16 25 C 0.13 1.49 7.96 -8.49 -0.07 1.42 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.76 8.12 -51.93 -0.42 0.33 16 29 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.41 5.83 8.14 -40.82 -0.33 5.50 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.39 8.86 7.80 -40.82 -0.32 8.54 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.09 1.44 8.11 -51.92 -0.42 1.02 16 38 H 0.09 1.18 8.05 -51.93 -0.42 0.77 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.97 6.23 -51.93 -0.32 1.64 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.26 7.46 -51.93 -0.39 0.88 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -30.45 363.26 -8.44 -38.88 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.75 Total: 13.84 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.80 Total: 3.25 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.52 Total: -58.42 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.19 Total: -18.50 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.45 -8.44 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490654645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.189 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds