Wall clock time and date at job start Tue Mar 31 2020 04:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.51074 * 2 1 4 4 C 1.53105 * 109.54173 * 120.10667 * 2 1 3 5 5 O 1.43015 * 109.25602 * 176.80331 * 4 2 1 6 6 C 1.43011 * 113.73931 * 301.32930 * 5 4 2 7 7 C 1.53101 * 109.25865 * 58.67470 * 6 5 4 8 8 N 1.47012 * 109.25466 * 303.14727 * 7 6 5 9 9 C 1.46899 * 110.99964 * 182.39140 * 8 7 6 10 10 C 1.53004 * 109.47017 * 46.36779 * 9 8 7 11 11 N 1.46493 * 109.47270 * 180.02562 * 10 9 8 12 12 C 1.36938 * 120.00144 * 275.14697 * 11 10 9 13 13 H 1.08000 * 119.99629 * 34.19992 * 12 11 10 14 14 C 1.38816 * 120.00469 * 214.20163 * 12 11 10 15 15 N 1.31617 * 119.99699 * 23.39391 * 14 12 11 16 16 Si 1.86802 * 120.00068 * 203.39429 * 14 12 11 17 17 H 1.48504 * 109.46918 * 60.00161 * 16 14 12 18 18 H 1.48496 * 109.46674 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47281 * 300.00169 * 16 14 12 20 20 C 1.46499 * 120.00331 * 95.15163 * 11 10 9 21 21 C 1.50701 * 109.46928 * 270.00003 * 20 11 10 22 22 C 1.35349 * 126.90955 * 265.02317 * 21 20 11 23 23 N 1.33776 * 106.49391 * 179.97438 * 22 21 20 24 24 N 1.28629 * 108.88589 * 0.02562 * 23 22 21 25 25 N 1.28710 * 110.18063 * 359.97438 * 24 23 22 26 26 H 0.97004 * 125.87155 * 180.02562 * 25 24 23 27 27 H 1.08997 * 109.47345 * 180.08703 * 1 2 3 28 28 H 1.08997 * 109.46952 * 300.09106 * 1 2 3 29 29 H 1.08999 * 109.47058 * 60.08789 * 1 2 3 30 30 H 1.08996 * 109.50352 * 296.73683 * 4 2 1 31 31 H 1.08992 * 109.50219 * 56.86924 * 4 2 1 32 32 H 1.09004 * 109.50474 * 178.60671 * 6 5 4 33 33 H 1.09003 * 109.50883 * 298.73755 * 6 5 4 34 34 H 1.08999 * 109.50633 * 183.21897 * 7 6 5 35 35 H 1.08997 * 109.50833 * 63.08713 * 7 6 5 36 36 H 1.08995 * 109.47419 * 286.37018 * 9 8 7 37 37 H 1.08999 * 109.47256 * 166.36407 * 9 8 7 38 38 H 1.09003 * 109.47130 * 59.99730 * 10 9 8 39 39 H 1.09001 * 109.47204 * 300.00242 * 10 9 8 40 40 H 0.96999 * 119.99731 * 179.97438 * 15 14 12 41 41 H 1.08994 * 109.47226 * 149.99809 * 20 11 10 42 42 H 1.09007 * 109.46992 * 29.99671 * 20 11 10 43 43 H 1.07993 * 126.75694 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7238 1.2482 5 8 3.4703 -0.7857 1.2049 6 6 3.9827 -1.4564 0.0504 7 6 3.4903 -0.7400 -1.2099 8 7 2.0209 -0.6948 -1.1990 9 6 1.5046 -0.0642 -2.4212 10 6 2.2245 -0.6470 -3.6390 11 7 1.7101 -0.0178 -4.8578 12 6 0.5780 -0.5051 -5.4546 13 1 -0.2173 -0.9153 -4.8499 14 6 0.4526 -0.4720 -6.8366 15 7 1.5279 -0.4215 -7.5939 16 14 -1.2422 -0.4990 -7.6217 17 1 -2.0192 0.6803 -7.1626 18 1 -1.1038 -0.4553 -9.0995 19 1 -1.9509 -1.7429 -7.2269 20 6 2.4067 1.1328 -5.4383 21 6 1.8528 2.4047 -4.8497 22 6 0.8803 3.1868 -5.3738 23 7 0.7095 4.2032 -4.5210 24 7 1.5227 4.0603 -3.5347 25 7 2.2273 2.9946 -3.6910 26 1 2.9096 2.6699 -3.0826 27 1 -0.3634 -1.0276 0.0016 28 1 -0.3633 0.5152 0.8892 29 1 -0.3633 0.5125 -0.8908 30 1 1.7282 -0.1795 2.1389 31 1 1.6346 -1.7343 1.2758 32 1 5.0724 -1.4421 0.0749 33 1 3.6317 -2.4883 0.0432 34 1 3.8312 -1.2809 -2.0927 35 1 3.8857 0.2755 -1.2293 36 1 1.6782 1.0109 -2.3766 37 1 0.4349 -0.2563 -2.5051 38 1 2.0509 -1.7222 -3.6836 39 1 3.2942 -0.4550 -3.5551 40 1 1.4403 -0.3988 -8.5596 41 1 2.2610 1.1387 -6.5185 42 1 3.4715 1.0631 -5.2157 43 1 0.3471 3.0226 -6.2984 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576147716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:28 Heat of formation + Delta-G solvation = 81.504800 kcal Electronic energy + Delta-G solvation = -25280.298570 eV Core-core repulsion = 21784.806373 eV Total energy + Delta-G solvation = -3495.492197 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.56203 -39.78892 -36.80464 -35.43623 -32.85982 -32.71651 -31.64291 -30.97676 -28.99547 -27.19604 -26.16979 -25.91669 -23.08902 -22.76456 -22.23216 -21.30994 -20.51575 -19.80260 -17.76489 -16.81415 -16.41573 -16.29375 -15.53186 -15.31018 -15.10753 -15.00178 -14.51862 -14.01861 -13.89320 -13.69688 -13.40864 -13.25288 -12.87476 -12.43496 -12.17511 -11.97488 -11.81014 -11.51001 -11.33575 -11.16731 -11.14616 -10.96918 -10.73078 -10.56392 -10.49778 -10.32655 -10.11962 -10.07365 -9.87497 -9.61422 -8.71609 -8.44124 -8.20995 -6.96212 -6.05955 -3.59076 2.25584 3.22545 3.29079 3.35134 3.37280 3.39521 3.73882 3.87849 4.34543 4.73539 4.91815 4.98882 5.06736 5.08978 5.18636 5.29238 5.34482 5.37883 5.50139 5.56368 5.59970 5.64391 5.70279 5.79096 5.81511 5.85146 5.93128 5.98855 6.06827 6.13694 6.21452 6.52292 6.54708 6.69500 6.87100 7.01577 7.15679 7.17673 7.22539 7.46209 7.63669 8.22591 8.89359 9.08894 9.52408 10.05044 10.97409 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.005370 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.813062 B = 5213.291073 C = 5999.084327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 H 0.043 0.957 4 C 0.070 3.930 5 O -0.389 6.389 6 C 0.063 3.937 7 C 0.013 3.987 8 N -0.529 5.529 9 C 0.036 3.964 10 C 0.143 3.857 11 N -0.569 5.569 12 C -0.265 4.265 13 H 0.065 0.935 14 C 0.019 3.981 15 N -0.884 5.884 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.280 1.280 20 C 0.199 3.801 21 C 0.011 3.989 22 C -0.053 4.053 23 N -0.276 5.276 24 N -0.117 5.117 25 N -0.401 5.401 26 H 0.435 0.565 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.035 0.965 36 H 0.020 0.980 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.260 0.740 41 H 0.131 0.869 42 H 0.041 0.959 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.354 -1.101 11.402 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 H 0.061 0.939 4 C -0.007 4.007 5 O -0.308 6.308 6 C -0.014 4.014 7 C -0.115 4.115 8 N -0.256 5.256 9 C -0.093 4.093 10 C 0.016 3.984 11 N -0.288 5.288 12 C -0.394 4.394 13 H 0.083 0.917 14 C -0.182 4.182 15 N -0.526 5.526 16 Si 0.725 3.275 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.206 1.206 20 C 0.070 3.930 21 C -0.125 4.125 22 C -0.210 4.210 23 N -0.144 5.144 24 N -0.097 5.097 25 N -0.121 5.121 26 H 0.278 0.722 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.148 0.852 42 H 0.059 0.941 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.919 -0.272 12.154 12.773 hybrid contribution -0.254 -0.297 -0.959 1.036 sum 3.665 -0.569 11.195 11.793 Atomic orbital electron populations 1.21781 0.93564 1.02759 1.02101 1.22285 0.96450 0.96113 0.91473 0.93877 1.22704 0.80809 1.00284 0.96883 1.87948 1.20797 1.78613 1.43438 1.22696 0.98649 0.95787 0.84231 1.22871 0.88988 0.99974 0.99694 1.62322 1.07565 1.53461 1.02203 1.22951 1.01585 0.95519 0.89249 1.21084 0.94348 0.97419 0.85510 1.43738 1.30277 1.28671 1.26071 1.18974 0.93475 1.37956 0.88979 0.91742 1.25069 0.97032 0.99474 0.96644 1.69918 1.27318 1.50712 1.04628 0.86460 0.84258 0.78684 0.78069 1.20433 1.21366 1.20566 1.19867 0.92330 0.78735 1.02099 1.24332 1.00383 0.99818 0.87972 1.23243 1.01278 0.93709 1.02787 1.74924 1.16696 1.22582 1.00247 1.78071 1.05835 1.05003 1.20785 1.45099 1.29855 1.18597 1.18588 0.72160 0.91600 0.92322 0.91881 0.88899 0.92293 0.88718 0.92258 0.88630 0.94643 0.96142 0.90311 0.92006 0.94370 0.92977 0.85191 0.94086 0.80184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.90 37.16 0.33 -1.44 16 2 C 0.05 0.59 2.55 -67.60 -0.17 0.42 16 3 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.07 0.81 6.30 37.21 0.23 1.04 16 5 O -0.39 -4.98 10.83 -35.23 -0.38 -5.36 16 6 C 0.06 0.71 7.01 37.21 0.26 0.97 16 7 C 0.01 0.16 4.94 -3.71 -0.02 0.14 16 8 N -0.53 -7.45 4.69 -226.34 -1.06 -8.51 16 9 C 0.04 0.60 4.78 -3.82 -0.02 0.58 16 10 C 0.14 2.57 4.99 -4.04 -0.02 2.55 16 11 N -0.57 -12.11 2.44 -174.61 -0.43 -12.54 16 12 C -0.26 -6.44 9.48 -15.06 -0.14 -6.59 16 13 H 0.06 1.61 7.93 -52.49 -0.42 1.20 16 14 C 0.02 0.46 4.94 -17.43 -0.09 0.38 16 15 N -0.88 -22.58 11.36 55.49 0.63 -21.95 16 16 Si 0.90 20.02 29.61 -169.99 -5.03 14.99 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.20 3.99 5.90 -5.19 -0.03 3.96 16 21 C 0.01 0.21 6.77 -82.09 -0.56 -0.34 16 22 C -0.05 -1.07 11.99 -17.73 -0.21 -1.28 16 23 N -0.28 -5.74 12.41 30.23 0.38 -5.37 16 24 N -0.12 -2.26 13.38 60.35 0.81 -1.45 16 25 N -0.40 -6.84 5.93 33.54 0.20 -6.64 16 26 H 0.43 6.09 8.49 -190.40 -1.62 4.47 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.89 6.60 -51.93 -0.34 0.55 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.17 6.05 -51.93 -0.31 0.86 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.34 6.35 -51.93 -0.33 0.01 16 37 H 0.08 1.47 6.86 -51.93 -0.36 1.12 16 38 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 39 H 0.04 0.62 5.97 -51.93 -0.31 0.31 16 40 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 41 H 0.13 2.98 5.35 -51.93 -0.28 2.70 16 42 H 0.04 0.74 7.86 -51.93 -0.41 0.34 16 43 H 0.18 3.54 8.06 -52.49 -0.42 3.12 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -27.46 341.55 -7.91 -35.37 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.73 Total: 5.92 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.43 Total: 0.39 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.52 Total: -56.46 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.38 Total: -5.36 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.46 -7.91 -35.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576147716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.875 kcal (2) G-P(sol) polarization free energy of solvation -27.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds