Wall clock time and date at job start Tue Mar 31 2020 04:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.51074 * 2 1 4 4 C 1.53105 * 109.54173 * 120.10667 * 2 1 3 5 5 O 1.43015 * 109.25602 * 176.80331 * 4 2 1 6 6 C 1.43011 * 113.73931 * 301.32930 * 5 4 2 7 7 C 1.53101 * 109.25865 * 58.67470 * 6 5 4 8 8 N 1.47012 * 109.25466 * 303.14727 * 7 6 5 9 9 C 1.46899 * 110.99964 * 182.39140 * 8 7 6 10 10 C 1.53004 * 109.47017 * 46.36779 * 9 8 7 11 11 N 1.46493 * 109.47270 * 180.02562 * 10 9 8 12 12 C 1.36938 * 120.00144 * 275.14697 * 11 10 9 13 13 H 1.08000 * 119.99629 * 34.19992 * 12 11 10 14 14 C 1.38816 * 120.00469 * 214.20163 * 12 11 10 15 15 N 1.31617 * 119.99699 * 23.39391 * 14 12 11 16 16 Si 1.86802 * 120.00068 * 203.39429 * 14 12 11 17 17 H 1.48504 * 109.46918 * 60.00161 * 16 14 12 18 18 H 1.48496 * 109.46674 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47281 * 300.00169 * 16 14 12 20 20 C 1.46499 * 120.00331 * 95.15163 * 11 10 9 21 21 C 1.50701 * 109.46928 * 270.00003 * 20 11 10 22 22 C 1.35349 * 126.90955 * 265.02317 * 21 20 11 23 23 N 1.33776 * 106.49391 * 179.97438 * 22 21 20 24 24 N 1.28629 * 108.88589 * 0.02562 * 23 22 21 25 25 N 1.28710 * 110.18063 * 359.97438 * 24 23 22 26 26 H 0.97004 * 125.87155 * 180.02562 * 25 24 23 27 27 H 1.08997 * 109.47345 * 180.08703 * 1 2 3 28 28 H 1.08997 * 109.46952 * 300.09106 * 1 2 3 29 29 H 1.08999 * 109.47058 * 60.08789 * 1 2 3 30 30 H 1.08996 * 109.50352 * 296.73683 * 4 2 1 31 31 H 1.08992 * 109.50219 * 56.86924 * 4 2 1 32 32 H 1.09004 * 109.50474 * 178.60671 * 6 5 4 33 33 H 1.09003 * 109.50883 * 298.73755 * 6 5 4 34 34 H 1.08999 * 109.50633 * 183.21897 * 7 6 5 35 35 H 1.08997 * 109.50833 * 63.08713 * 7 6 5 36 36 H 1.08995 * 109.47419 * 286.37018 * 9 8 7 37 37 H 1.08999 * 109.47256 * 166.36407 * 9 8 7 38 38 H 1.09003 * 109.47130 * 59.99730 * 10 9 8 39 39 H 1.09001 * 109.47204 * 300.00242 * 10 9 8 40 40 H 0.96999 * 119.99731 * 179.97438 * 15 14 12 41 41 H 1.08994 * 109.47226 * 149.99809 * 20 11 10 42 42 H 1.09007 * 109.46992 * 29.99671 * 20 11 10 43 43 H 1.07993 * 126.75694 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7238 1.2482 5 8 3.4703 -0.7857 1.2049 6 6 3.9827 -1.4564 0.0504 7 6 3.4903 -0.7400 -1.2099 8 7 2.0209 -0.6948 -1.1990 9 6 1.5046 -0.0642 -2.4212 10 6 2.2245 -0.6470 -3.6390 11 7 1.7101 -0.0178 -4.8578 12 6 0.5780 -0.5051 -5.4546 13 1 -0.2173 -0.9153 -4.8499 14 6 0.4526 -0.4720 -6.8366 15 7 1.5279 -0.4215 -7.5939 16 14 -1.2422 -0.4990 -7.6217 17 1 -2.0192 0.6803 -7.1626 18 1 -1.1038 -0.4553 -9.0995 19 1 -1.9509 -1.7429 -7.2269 20 6 2.4067 1.1328 -5.4383 21 6 1.8528 2.4047 -4.8497 22 6 0.8803 3.1868 -5.3738 23 7 0.7095 4.2032 -4.5210 24 7 1.5227 4.0603 -3.5347 25 7 2.2273 2.9946 -3.6910 26 1 2.9096 2.6699 -3.0826 27 1 -0.3634 -1.0276 0.0016 28 1 -0.3633 0.5152 0.8892 29 1 -0.3633 0.5125 -0.8908 30 1 1.7282 -0.1795 2.1389 31 1 1.6346 -1.7343 1.2758 32 1 5.0724 -1.4421 0.0749 33 1 3.6317 -2.4883 0.0432 34 1 3.8312 -1.2809 -2.0927 35 1 3.8857 0.2755 -1.2293 36 1 1.6782 1.0109 -2.3766 37 1 0.4349 -0.2563 -2.5051 38 1 2.0509 -1.7222 -3.6836 39 1 3.2942 -0.4550 -3.5551 40 1 1.4403 -0.3988 -8.5596 41 1 2.2610 1.1387 -6.5185 42 1 3.4715 1.0631 -5.2157 43 1 0.3471 3.0226 -6.2984 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576147716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:27 Heat of formation + Delta-G solvation = 62.594069 kcal Electronic energy + Delta-G solvation = -25281.118601 eV Core-core repulsion = 21784.806373 eV Total energy + Delta-G solvation = -3496.312227 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.11476 -40.81678 -38.21433 -36.74050 -34.30827 -33.99574 -33.31494 -32.44492 -30.30630 -28.29710 -27.71145 -27.28566 -24.60816 -23.80418 -23.74157 -22.79099 -21.97901 -20.92401 -19.37551 -18.46948 -17.56156 -17.27990 -16.91924 -16.76882 -16.47707 -16.11913 -15.77178 -15.42389 -15.37633 -15.18326 -14.87987 -14.69024 -14.17133 -13.70019 -13.22991 -13.19693 -13.10730 -12.90096 -12.85499 -12.72992 -12.58972 -12.29789 -12.17230 -12.11287 -12.06833 -11.75106 -11.56726 -11.48798 -11.35584 -10.64358 -10.51983 -10.02041 -9.35612 -8.73506 -7.92747 -5.47397 0.71454 1.47764 1.53794 1.58341 1.63652 1.94682 2.47967 2.72618 2.94317 3.20689 3.68183 3.73012 3.79954 3.94093 3.99143 4.10317 4.13380 4.15915 4.28970 4.29568 4.42033 4.51261 4.53973 4.58597 4.66845 4.72276 4.76337 4.88078 4.90588 4.96190 4.98788 5.08154 5.21160 5.25297 5.29395 5.54411 5.68487 5.98570 6.02479 6.05362 6.17620 6.41174 7.08351 7.52341 7.73927 8.23169 9.07317 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.005370 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.813062 B = 5213.291073 C = 5999.084327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 H 0.034 0.966 4 C 0.073 3.927 5 O -0.402 6.402 6 C 0.064 3.936 7 C 0.011 3.989 8 N -0.535 5.535 9 C 0.057 3.943 10 C 0.148 3.852 11 N -0.580 5.580 12 C -0.268 4.268 13 H 0.051 0.949 14 C -0.014 4.014 15 N -0.903 5.903 16 Si 0.941 3.059 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.281 1.281 20 C 0.206 3.794 21 C 0.017 3.983 22 C -0.066 4.066 23 N -0.296 5.296 24 N -0.116 5.116 25 N -0.379 5.379 26 H 0.450 0.550 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.037 0.963 36 H 0.017 0.983 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.258 0.742 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -1.171 12.978 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 H 0.052 0.948 4 C -0.004 4.004 5 O -0.320 6.320 6 C -0.012 4.012 7 C -0.117 4.117 8 N -0.261 5.261 9 C -0.073 4.073 10 C 0.022 3.978 11 N -0.299 5.299 12 C -0.398 4.398 13 H 0.069 0.931 14 C -0.213 4.213 15 N -0.546 5.546 16 Si 0.770 3.230 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.207 1.207 20 C 0.076 3.924 21 C -0.120 4.120 22 C -0.224 4.224 23 N -0.164 5.164 24 N -0.096 5.096 25 N -0.101 5.101 26 H 0.297 0.703 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.131 0.869 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.055 0.945 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.840 -0.346 13.767 14.597 hybrid contribution -0.498 -0.286 -1.368 1.484 sum 4.342 -0.632 12.399 13.152 Atomic orbital electron populations 1.21739 0.93330 1.02700 1.01948 1.22354 0.96668 0.95738 0.91588 0.94769 1.22771 0.80355 1.00577 0.96684 1.87940 1.21323 1.78817 1.43953 1.22803 0.99959 0.95452 0.82998 1.22952 0.87671 1.00350 1.00715 1.62300 1.08876 1.53275 1.01647 1.22546 0.99768 0.95130 0.89880 1.21094 0.95683 0.96277 0.84752 1.43839 1.29815 1.29373 1.26908 1.19009 0.94250 1.37492 0.89075 0.93137 1.25474 0.98863 0.99964 0.96983 1.69991 1.28230 1.51945 1.04467 0.85764 0.81827 0.78162 0.77263 1.20908 1.21446 1.20700 1.19678 0.93378 0.78642 1.00676 1.24042 1.00101 0.99471 0.88413 1.23376 1.01820 0.94104 1.03084 1.74919 1.17560 1.23146 1.00745 1.78012 1.05769 1.05447 1.20384 1.44994 1.29454 1.17623 1.18055 0.70284 0.91611 0.90136 0.94318 0.86889 0.91920 0.86425 0.92031 0.88483 0.94458 0.96524 0.93042 0.93666 0.92046 0.93275 0.87631 0.91827 0.80278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.90 71.98 0.64 -2.63 16 2 C 0.05 1.09 2.55 44.93 0.11 1.21 16 3 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 4 C 0.07 1.49 6.30 72.02 0.45 1.94 16 5 O -0.40 -9.16 10.83 -148.98 -1.61 -10.78 16 6 C 0.06 1.26 7.01 72.02 0.50 1.77 16 7 C 0.01 0.25 4.94 86.32 0.43 0.68 16 8 N -0.53 -14.32 4.69 -870.00 -4.08 -18.40 16 9 C 0.06 1.83 4.78 86.30 0.41 2.24 16 10 C 0.15 5.19 4.99 86.38 0.43 5.62 16 11 N -0.58 -24.48 2.44 -706.34 -1.72 -26.20 16 12 C -0.27 -13.15 9.48 84.03 0.80 -12.35 16 13 H 0.05 2.58 7.93 -2.91 -0.02 2.56 16 14 C -0.01 -0.69 4.94 84.86 0.42 -0.27 16 15 N -0.90 -46.32 11.36 21.65 0.25 -46.07 16 16 Si 0.94 41.44 29.61 68.60 2.03 43.47 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 C 0.21 8.06 5.90 85.63 0.51 8.57 16 21 C 0.02 0.62 6.77 41.36 0.28 0.90 16 22 C -0.07 -2.67 11.99 83.73 1.00 -1.66 16 23 N -0.30 -12.08 12.41 -58.26 -0.72 -12.80 16 24 N -0.12 -4.31 13.38 37.02 0.50 -3.82 16 25 N -0.38 -12.27 5.93 -47.79 -0.28 -12.55 16 26 H 0.45 11.53 8.49 -219.96 -1.87 9.66 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.09 6.60 -2.39 -0.02 1.07 16 30 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 2.16 6.05 -2.39 -0.01 2.14 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.02 0.54 6.35 -2.39 -0.02 0.53 16 37 H 0.05 1.94 6.86 -2.39 -0.02 1.93 16 38 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 39 H 0.06 1.87 5.97 -2.39 -0.01 1.85 16 40 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16 41 H 0.11 4.83 5.35 -2.39 -0.01 4.81 16 42 H 0.06 2.18 7.86 -2.38 -0.02 2.17 16 43 H 0.18 7.12 8.06 -2.91 -0.02 7.10 16 Total: -1.00 -57.70 341.55 -0.51 -58.21 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.85 Total: 22.92 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.99 Total: 6.01 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -6.07 Total: -119.83 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.61 Total: -10.78 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -57.70 -0.51 -58.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576147716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.801 kcal (2) G-P(sol) polarization free energy of solvation -57.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds