Wall clock time and date at job start Tue Mar 31 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21280 * 120.00064 * 2 1 4 4 N 1.34780 * 119.99995 * 180.02562 * 2 1 3 5 5 C 1.46625 * 121.56525 * 359.97189 * 4 2 1 6 6 C 1.50660 * 109.82778 * 238.14940 * 5 4 2 7 7 C 1.48892 * 117.85815 * 329.00977 * 6 5 4 8 8 H 1.08994 * 105.28312 * 128.66077 * 7 6 5 9 9 C 1.50838 * 120.89071 * 10.08921 * 7 6 5 10 10 H 1.09001 * 108.92188 * 112.84158 * 9 7 6 11 11 C 1.55208 * 105.31964 * 229.43958 * 9 7 6 12 12 C 1.55262 * 102.11074 * 23.85797 * 11 9 7 13 13 N 1.48170 * 111.77535 * 241.43921 * 7 6 5 14 14 C 1.46898 * 110.99617 * 350.19727 * 13 7 6 15 15 C 1.50700 * 109.47622 * 297.16034 * 14 13 7 16 16 O 1.21286 * 119.99830 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00079 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99624 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00447 * 359.73312 * 18 17 15 20 20 C 1.38956 * 119.99708 * 179.72356 * 18 17 15 21 21 N 1.31408 * 119.99900 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99875 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47267 * 90.00142 * 22 20 18 24 24 H 1.48505 * 109.47219 * 210.00336 * 22 20 18 25 25 H 1.48503 * 109.47592 * 330.00359 * 22 20 18 26 26 C 1.46604 * 121.56433 * 180.02562 * 4 2 1 27 27 H 1.09000 * 109.46990 * 239.99479 * 1 2 3 28 28 H 1.08994 * 109.47037 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47022 * 119.99844 * 1 2 3 30 30 H 1.09004 * 109.33611 * 357.83659 * 5 4 2 31 31 H 1.08996 * 109.33509 * 117.50590 * 5 4 2 32 32 H 1.08996 * 106.25986 * 208.00480 * 6 5 4 33 33 H 1.09002 * 109.01975 * 92.29134 * 6 5 4 34 34 H 1.08997 * 110.90316 * 142.06613 * 11 9 7 35 35 H 1.09000 * 110.89854 * 265.62045 * 11 9 7 36 36 H 1.09004 * 110.76507 * 202.80879 * 12 11 9 37 37 H 1.09001 * 110.76651 * 79.41431 * 12 11 9 38 38 H 1.09002 * 109.47100 * 177.15896 * 14 13 7 39 39 H 1.09000 * 109.46959 * 57.16372 * 14 13 7 40 40 H 0.96998 * 119.99911 * 359.72863 * 17 15 14 41 41 H 0.96998 * 119.99829 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.33867 * 0.57644 * 26 4 2 43 43 H 1.09000 * 109.34032 * 241.04383 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4827 -2.4566 -0.0005 6 6 1.8976 -3.2623 1.2031 7 6 3.2785 -3.0712 1.7259 8 1 3.1580 -2.8780 2.7918 9 6 4.1501 -1.9493 1.2192 10 1 4.3116 -1.2349 2.0265 11 6 5.5059 -2.6137 0.8594 12 6 5.0895 -4.0882 0.6082 13 7 4.0676 -4.3239 1.6649 14 6 3.2124 -5.4686 1.3243 15 6 2.1830 -5.6665 2.4070 16 8 2.1634 -4.9264 3.3677 17 7 1.2842 -6.6660 2.3078 18 6 0.3481 -6.8462 3.2931 19 1 0.3337 -6.1902 4.1508 20 6 -0.5822 -7.8731 3.1880 21 7 -0.5644 -8.6715 2.1445 22 14 -1.8580 -8.1183 4.5301 23 1 -3.0705 -7.3222 4.2119 24 1 -2.2181 -9.5566 4.6140 25 1 -1.2998 -7.6711 5.8316 26 6 3.6464 -1.2073 0.0000 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 0.4071 -2.2846 0.0388 31 1 1.7282 -2.9999 -0.9129 32 1 1.7892 -4.3097 0.9213 33 1 1.2016 -3.0665 2.0187 34 1 5.9293 -2.1701 -0.0417 35 1 6.2064 -2.5431 1.6915 36 1 5.9403 -4.7573 0.7372 37 1 4.6533 -4.2029 -0.3840 38 1 3.8246 -6.3662 1.2366 39 1 2.7101 -5.2774 0.3760 40 1 1.2974 -7.2554 1.5376 41 1 -1.2135 -9.3885 2.0713 42 1 4.0353 -0.1890 0.0112 43 1 3.9940 -1.7143 -0.9001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667674292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:02 Heat of formation + Delta-G solvation = -34.852102 kcal Electronic energy + Delta-G solvation = -25255.792740 eV Core-core repulsion = 21722.962178 eV Total energy + Delta-G solvation = -3532.830562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94984 -39.28538 -37.76759 -35.69263 -34.13968 -33.26162 -31.37983 -31.17951 -30.06681 -28.44335 -27.06677 -25.03026 -23.93949 -23.23628 -20.84131 -20.25402 -19.21499 -18.11449 -17.71031 -17.01445 -16.61799 -16.39195 -15.77517 -15.35478 -14.98790 -14.89530 -14.48977 -13.94373 -13.80791 -13.39296 -13.28715 -13.08911 -12.86811 -12.54840 -12.26892 -12.18094 -12.06303 -11.93346 -11.74198 -11.47250 -11.28512 -11.06785 -10.90128 -10.64107 -10.43259 -10.35822 -10.26640 -10.19111 -9.80139 -9.53470 -8.67873 -8.49238 -8.02109 -7.93907 -6.46373 -3.87176 2.58124 2.97267 3.13832 3.23506 3.29115 3.81656 4.04405 4.24271 4.48622 4.59854 4.70105 4.81526 4.95095 5.03517 5.12716 5.15908 5.21648 5.27388 5.29043 5.29775 5.44108 5.48728 5.57510 5.62696 5.68426 5.77752 5.84605 5.85913 5.93682 6.02170 6.08045 6.20775 6.23105 6.42674 6.62247 6.67181 7.19586 7.26225 7.39957 7.50804 8.00915 8.11858 8.56662 9.13609 9.48734 10.00554 10.71244 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.004568 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.347045 B = 6128.573981 C = 7227.711497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.517 3.483 3 O -0.556 6.556 4 N -0.609 5.609 5 C 0.113 3.887 6 C -0.167 4.167 7 C 0.085 3.915 8 H 0.085 0.915 9 C -0.103 4.103 10 H 0.077 0.923 11 C -0.116 4.116 12 C 0.025 3.975 13 N -0.479 5.479 14 C 0.024 3.976 15 C 0.445 3.555 16 O -0.576 6.576 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.024 3.976 21 N -0.901 5.901 22 Si 0.928 3.072 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.120 3.880 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.090 0.910 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 9.361 -8.693 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.306 3.694 3 O -0.434 6.434 4 N -0.342 5.342 5 C -0.010 4.010 6 C -0.206 4.206 7 C -0.023 4.023 8 H 0.103 0.897 9 C -0.123 4.123 10 H 0.095 0.905 11 C -0.154 4.154 12 C -0.103 4.103 13 N -0.203 5.203 14 C -0.107 4.107 15 C 0.230 3.770 16 O -0.459 6.459 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.543 5.543 22 Si 0.755 3.245 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.003 4.003 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.112 10.119 -7.536 14.020 hybrid contribution -1.140 -0.763 -0.561 1.482 sum 4.972 9.356 -8.098 13.335 Atomic orbital electron populations 1.21937 0.91794 1.05229 1.04444 1.20766 0.90644 0.82776 0.75187 1.90681 1.70878 1.31060 1.50807 1.48002 1.07037 1.06221 1.72938 1.21326 0.97547 0.83471 0.98652 1.21414 0.98053 1.02866 0.98239 1.20521 0.90567 0.88494 1.02731 0.89717 1.21481 0.95508 0.97329 0.97994 0.90489 1.22772 0.96296 0.94715 1.01627 1.23469 0.96427 0.96727 0.93672 1.65794 1.11944 1.01917 1.40624 1.22222 0.95979 0.95454 0.97090 1.19587 0.84407 0.84219 0.88770 1.90530 1.74233 1.47158 1.34027 1.41872 1.28214 1.27693 1.22376 1.19673 1.07500 1.13831 1.01743 0.87950 1.25239 0.98816 0.95885 0.97870 1.69605 1.37189 1.18603 1.28869 0.85884 0.80324 0.77383 0.80874 1.20441 1.20926 1.19425 1.21263 0.79898 1.01900 0.97268 0.89062 0.89134 0.89419 0.89531 0.91700 0.88575 0.90237 0.90906 0.90379 0.90071 0.93928 0.89287 0.92580 0.77541 0.91863 0.89116 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 8.69 36.01 0.31 -1.40 16 2 C 0.52 7.02 7.83 -10.98 -0.09 6.93 16 3 O -0.56 -9.49 16.56 5.56 0.09 -9.40 16 4 N -0.61 -7.76 2.92 -175.89 -0.51 -8.27 16 5 C 0.11 1.36 6.36 -5.15 -0.03 1.33 16 6 C -0.17 -2.58 3.93 -29.92 -0.12 -2.70 16 7 C 0.09 1.34 2.26 -70.11 -0.16 1.18 16 8 H 0.08 1.65 7.17 -51.93 -0.37 1.28 16 9 C -0.10 -1.32 3.08 -91.37 -0.28 -1.60 16 10 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 11 C -0.12 -1.25 6.49 -24.36 -0.16 -1.41 16 12 C 0.03 0.30 6.58 -1.53 -0.01 0.29 16 13 N -0.48 -7.68 5.14 -227.61 -1.17 -8.85 16 14 C 0.02 0.41 4.93 -4.98 -0.02 0.38 16 15 C 0.44 9.80 5.77 -10.98 -0.06 9.74 16 16 O -0.58 -14.62 13.44 5.55 0.07 -14.55 16 17 N -0.56 -13.49 5.29 -10.96 -0.06 -13.55 16 18 C -0.30 -7.93 9.68 -14.93 -0.14 -8.08 16 19 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -23.66 13.05 55.50 0.72 -22.94 16 22 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 C 0.12 1.45 5.75 -4.82 -0.03 1.42 16 27 H 0.09 0.85 7.81 -51.93 -0.41 0.44 16 28 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 29 H 0.09 0.69 7.89 -51.93 -0.41 0.28 16 30 H 0.09 0.91 6.01 -51.93 -0.31 0.60 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.60 3.08 -51.93 -0.16 1.44 16 33 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 34 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.48 8.01 -51.93 -0.42 0.06 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 0.84 6.28 -51.93 -0.33 0.52 16 40 H 0.39 8.99 7.90 -40.82 -0.32 8.66 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.09 1.17 7.04 -51.93 -0.37 0.80 16 43 H 0.06 0.69 7.59 -51.93 -0.39 0.30 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -31.63 332.46 -8.07 -39.70 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.32 Total: 10.81 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.89 Total: 6.61 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -1.02 Total: -53.61 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.17 Total: -23.94 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.63 -8.07 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667674292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.852 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds