Wall clock time and date at job start Tue Mar 31 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21280 * 120.00064 * 2 1 4 4 N 1.34780 * 119.99995 * 180.02562 * 2 1 3 5 5 C 1.46625 * 121.56525 * 359.97189 * 4 2 1 6 6 C 1.50660 * 109.82778 * 238.14940 * 5 4 2 7 7 C 1.48892 * 117.85815 * 329.00977 * 6 5 4 8 8 H 1.08994 * 105.28312 * 128.66077 * 7 6 5 9 9 C 1.50838 * 120.89071 * 10.08921 * 7 6 5 10 10 H 1.09001 * 108.92188 * 112.84158 * 9 7 6 11 11 C 1.55208 * 105.31964 * 229.43958 * 9 7 6 12 12 C 1.55262 * 102.11074 * 23.85797 * 11 9 7 13 13 N 1.48170 * 111.77535 * 241.43921 * 7 6 5 14 14 C 1.46898 * 110.99617 * 350.19727 * 13 7 6 15 15 C 1.50700 * 109.47622 * 297.16034 * 14 13 7 16 16 O 1.21286 * 119.99830 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00079 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99624 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00447 * 359.73312 * 18 17 15 20 20 C 1.38956 * 119.99708 * 179.72356 * 18 17 15 21 21 N 1.31408 * 119.99900 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99875 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47267 * 90.00142 * 22 20 18 24 24 H 1.48505 * 109.47219 * 210.00336 * 22 20 18 25 25 H 1.48503 * 109.47592 * 330.00359 * 22 20 18 26 26 C 1.46604 * 121.56433 * 180.02562 * 4 2 1 27 27 H 1.09000 * 109.46990 * 239.99479 * 1 2 3 28 28 H 1.08994 * 109.47037 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47022 * 119.99844 * 1 2 3 30 30 H 1.09004 * 109.33611 * 357.83659 * 5 4 2 31 31 H 1.08996 * 109.33509 * 117.50590 * 5 4 2 32 32 H 1.08996 * 106.25986 * 208.00480 * 6 5 4 33 33 H 1.09002 * 109.01975 * 92.29134 * 6 5 4 34 34 H 1.08997 * 110.90316 * 142.06613 * 11 9 7 35 35 H 1.09000 * 110.89854 * 265.62045 * 11 9 7 36 36 H 1.09004 * 110.76507 * 202.80879 * 12 11 9 37 37 H 1.09001 * 110.76651 * 79.41431 * 12 11 9 38 38 H 1.09002 * 109.47100 * 177.15896 * 14 13 7 39 39 H 1.09000 * 109.46959 * 57.16372 * 14 13 7 40 40 H 0.96998 * 119.99911 * 359.72863 * 17 15 14 41 41 H 0.96998 * 119.99829 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.33867 * 0.57644 * 26 4 2 43 43 H 1.09000 * 109.34032 * 241.04383 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4827 -2.4566 -0.0005 6 6 1.8976 -3.2623 1.2031 7 6 3.2785 -3.0712 1.7259 8 1 3.1580 -2.8780 2.7918 9 6 4.1501 -1.9493 1.2192 10 1 4.3116 -1.2349 2.0265 11 6 5.5059 -2.6137 0.8594 12 6 5.0895 -4.0882 0.6082 13 7 4.0676 -4.3239 1.6649 14 6 3.2124 -5.4686 1.3243 15 6 2.1830 -5.6665 2.4070 16 8 2.1634 -4.9264 3.3677 17 7 1.2842 -6.6660 2.3078 18 6 0.3481 -6.8462 3.2931 19 1 0.3337 -6.1902 4.1508 20 6 -0.5822 -7.8731 3.1880 21 7 -0.5644 -8.6715 2.1445 22 14 -1.8580 -8.1183 4.5301 23 1 -3.0705 -7.3222 4.2119 24 1 -2.2181 -9.5566 4.6140 25 1 -1.2998 -7.6711 5.8316 26 6 3.6464 -1.2073 0.0000 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 0.4071 -2.2846 0.0388 31 1 1.7282 -2.9999 -0.9129 32 1 1.7892 -4.3097 0.9213 33 1 1.2016 -3.0665 2.0187 34 1 5.9293 -2.1701 -0.0417 35 1 6.2064 -2.5431 1.6915 36 1 5.9403 -4.7573 0.7372 37 1 4.6533 -4.2029 -0.3840 38 1 3.8246 -6.3662 1.2366 39 1 2.7101 -5.2774 0.3760 40 1 1.2974 -7.2554 1.5376 41 1 -1.2135 -9.3885 2.0713 42 1 4.0353 -0.1890 0.0112 43 1 3.9940 -1.7143 -0.9001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667674292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:01 Heat of formation + Delta-G solvation = -58.657563 kcal Electronic energy + Delta-G solvation = -25256.825022 eV Core-core repulsion = 21722.962178 eV Total energy + Delta-G solvation = -3533.862844 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.13879 -40.55115 -39.33726 -36.82198 -35.95837 -34.55955 -33.23791 -32.38513 -31.07935 -29.46785 -28.46343 -26.55577 -25.29094 -24.32174 -21.95521 -21.42971 -20.81151 -19.87154 -18.98445 -18.12314 -17.88366 -17.50422 -17.34869 -16.50550 -16.44960 -16.20830 -16.06123 -15.49074 -15.10521 -14.65991 -14.35549 -14.27646 -14.19181 -13.62869 -13.53013 -13.37159 -13.24686 -13.06487 -13.02174 -12.89802 -12.74217 -12.39461 -12.35808 -12.12682 -11.92629 -11.74672 -11.50658 -11.44145 -11.41175 -10.89518 -10.25728 -9.97414 -9.73076 -9.23216 -8.44120 -5.91627 1.38076 1.42922 1.54049 1.54348 1.98979 2.08651 2.29757 2.88999 3.21347 3.29446 3.50345 3.68190 3.71085 3.75717 3.95925 4.08656 4.18987 4.24135 4.26209 4.36186 4.43743 4.47008 4.52879 4.55800 4.59339 4.68139 4.75640 4.82973 4.90542 4.99067 5.01563 5.09371 5.21530 5.38388 5.40073 5.43970 5.45195 5.93416 6.01282 6.14586 6.37923 6.64408 7.08386 7.16904 7.59765 8.16512 8.73142 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.004568 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.347045 B = 6128.573981 C = 7227.711497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.597 6.597 4 N -0.609 5.609 5 C 0.118 3.882 6 C -0.157 4.157 7 C 0.097 3.903 8 H 0.029 0.971 9 C -0.099 4.099 10 H 0.060 0.940 11 C -0.106 4.106 12 C 0.027 3.973 13 N -0.506 5.506 14 C 0.037 3.963 15 C 0.447 3.553 16 O -0.614 6.614 17 N -0.574 5.574 18 C -0.327 4.327 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.986 3.014 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.277 1.277 26 C 0.121 3.879 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.083 0.917 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 8.968 -10.969 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.478 6.478 4 N -0.341 5.341 5 C -0.004 4.004 6 C -0.196 4.196 7 C -0.011 4.011 8 H 0.048 0.952 9 C -0.120 4.120 10 H 0.078 0.922 11 C -0.144 4.144 12 C -0.100 4.100 13 N -0.230 5.230 14 C -0.095 4.095 15 C 0.234 3.766 16 O -0.500 6.500 17 N -0.211 5.211 18 C -0.456 4.456 19 H 0.093 0.907 20 C -0.209 4.209 21 N -0.560 5.560 22 Si 0.811 3.189 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.202 1.202 26 C -0.002 4.002 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.230 0.770 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.406 9.701 -9.836 15.228 hybrid contribution -1.167 -0.624 0.211 1.340 sum 5.239 9.076 -9.626 14.229 Atomic orbital electron populations 1.21967 0.89002 1.06108 1.05831 1.21435 0.92102 0.82270 0.74200 1.90660 1.71972 1.32408 1.52805 1.48104 1.07485 1.06301 1.72233 1.21356 0.98478 0.82824 0.97762 1.21260 0.97025 1.02923 0.98409 1.20351 0.91419 0.89698 0.99653 0.95222 1.21375 0.96411 0.96124 0.98065 0.92182 1.22782 0.94782 0.93836 1.03015 1.23592 0.95516 0.97591 0.93313 1.65685 1.12500 1.01475 1.43362 1.22087 0.94931 0.96743 0.95692 1.20561 0.84285 0.82500 0.89255 1.90522 1.75180 1.48189 1.36115 1.41900 1.28529 1.28558 1.22148 1.19560 1.09408 1.14476 1.02194 0.90663 1.25904 0.99991 0.95201 0.99763 1.69655 1.37777 1.18773 1.29772 0.85025 0.78154 0.77755 0.78009 1.19570 1.19732 1.20217 1.21320 0.79663 1.01565 0.97636 0.88672 0.88673 0.86762 0.87903 0.88951 0.89617 0.94220 0.87635 0.90665 0.88707 0.91804 0.87444 0.89833 0.77016 0.91386 0.89899 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.69 71.24 0.62 -2.42 16 2 C 0.51 13.29 7.83 87.66 0.69 13.97 16 3 O -0.60 -20.23 16.56 -3.03 -0.05 -20.28 16 4 N -0.61 -14.53 2.92 -828.77 -2.42 -16.96 16 5 C 0.12 2.61 6.36 85.60 0.54 3.15 16 6 C -0.16 -4.87 3.93 28.53 0.11 -4.76 16 7 C 0.10 3.10 2.26 42.66 0.10 3.19 16 8 H 0.03 1.24 7.17 -2.39 -0.02 1.23 16 9 C -0.10 -2.47 3.08 -11.28 -0.03 -2.51 16 10 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 11 C -0.11 -2.00 6.49 32.13 0.21 -1.80 16 12 C 0.03 0.56 6.58 86.70 0.57 1.13 16 13 N -0.51 -15.73 5.14 -874.01 -4.49 -20.22 16 14 C 0.04 1.19 4.93 85.56 0.42 1.61 16 15 C 0.45 20.08 5.77 87.66 0.51 20.59 16 16 O -0.61 -32.78 13.44 -3.05 -0.04 -32.82 16 17 N -0.57 -27.90 5.29 -306.99 -1.62 -29.52 16 18 C -0.33 -17.89 9.68 84.04 0.81 -17.07 16 19 H 0.08 4.46 7.16 -2.91 -0.02 4.44 16 20 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 21 N -0.92 -47.82 13.05 21.66 0.28 -47.54 16 22 Si 0.99 41.98 29.55 68.60 2.03 44.01 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.12 2.68 5.75 85.82 0.49 3.17 16 27 H 0.09 1.65 7.81 -2.39 -0.02 1.63 16 28 H 0.09 1.62 8.12 -2.39 -0.02 1.60 16 29 H 0.11 1.44 7.89 -2.39 -0.02 1.42 16 30 H 0.10 1.95 6.01 -2.38 -0.01 1.93 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 2.81 3.08 -2.39 -0.01 2.80 16 33 H 0.04 1.51 7.71 -2.39 -0.02 1.49 16 34 H 0.11 1.37 7.56 -2.39 -0.02 1.35 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.06 1.10 8.01 -2.39 -0.02 1.09 16 38 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.08 2.28 6.28 -2.39 -0.02 2.26 16 40 H 0.40 18.22 7.90 -92.71 -0.73 17.49 16 41 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 42 H 0.08 2.02 7.04 -2.39 -0.02 2.00 16 43 H 0.09 1.58 7.59 -2.39 -0.02 1.56 16 Total: -1.00 -71.97 332.46 -0.51 -72.48 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.30 Total: 32.56 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 5.50 Total: 18.29 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -8.25 Total: -114.24 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -0.09 Total: -53.10 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -71.97 -0.51 -72.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667674292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.826 kcal (2) G-P(sol) polarization free energy of solvation -71.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds