Wall clock time and date at job start Tue Mar 31 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21273 * 120.00286 * 2 1 4 4 N 1.34781 * 119.99764 * 180.02562 * 2 1 3 5 5 C 1.46596 * 119.69975 * 359.97438 * 4 2 1 6 6 C 1.53934 * 110.65228 * 227.68859 * 5 4 2 7 7 C 1.51686 * 107.29869 * 308.68299 * 6 5 4 8 8 H 1.08991 * 110.34270 * 305.22084 * 7 6 5 9 9 C 1.55427 * 107.39788 * 65.04524 * 7 6 5 10 10 H 1.08994 * 110.62277 * 49.79876 * 9 7 6 11 11 C 1.53036 * 101.74846 * 167.24250 * 9 7 6 12 12 C 1.54941 * 104.03103 * 332.48602 * 11 9 7 13 13 N 1.46723 * 116.50159 * 178.99566 * 7 6 5 14 14 C 1.46907 * 110.99429 * 80.40342 * 13 7 6 15 15 C 1.50701 * 109.46843 * 185.43442 * 14 13 7 16 16 O 1.21294 * 120.00342 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00020 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99834 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00713 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99784 * 179.97438 * 18 17 15 21 21 N 1.31418 * 120.00259 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99919 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47281 * 90.00457 * 22 20 18 24 24 H 1.48500 * 109.47297 * 210.00160 * 22 20 18 25 25 H 1.48494 * 109.47092 * 330.00276 * 22 20 18 26 26 C 1.47748 * 119.69937 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47326 * 269.99677 * 1 2 3 28 28 H 1.09007 * 109.46925 * 29.99781 * 1 2 3 29 29 H 1.09003 * 109.47242 * 149.99383 * 1 2 3 30 30 H 1.08997 * 109.24174 * 107.38371 * 5 4 2 31 31 H 1.09005 * 109.23899 * 347.98684 * 5 4 2 32 32 H 1.08997 * 109.89147 * 189.23370 * 6 5 4 33 33 H 1.09001 * 109.95292 * 68.16707 * 6 5 4 34 34 H 1.08999 * 110.51535 * 91.12181 * 11 9 7 35 35 H 1.08999 * 110.51516 * 213.70807 * 11 9 7 36 36 H 1.08996 * 109.98611 * 121.64392 * 12 11 9 37 37 H 1.08998 * 109.98096 * 242.90401 * 12 11 9 38 38 H 1.08996 * 109.47292 * 305.43370 * 14 13 7 39 39 H 1.08998 * 109.47097 * 65.43844 * 14 13 7 40 40 H 0.96998 * 119.99550 * 359.97438 * 17 15 14 41 41 H 0.96991 * 119.99972 * 179.97438 * 21 20 18 42 42 H 1.09001 * 110.07773 * 9.07591 * 26 4 2 43 43 H 1.09000 * 110.07587 * 247.48212 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4412 -2.4329 -0.0005 6 6 2.0048 -3.3912 1.0642 7 6 3.5045 -3.4708 0.8508 8 1 3.7262 -3.7591 -0.1766 9 6 4.0911 -2.0618 1.1444 10 1 3.7278 -1.6863 2.1009 11 6 5.5907 -2.3579 1.2189 12 6 5.6593 -3.8370 1.6754 13 7 4.2540 -4.3219 1.7817 14 6 4.1548 -5.7365 1.3978 15 6 4.8216 -6.5894 2.4461 16 8 5.3290 -6.0701 3.4178 17 7 4.8540 -7.9293 2.3041 18 6 5.4601 -8.7052 3.2581 19 1 5.9120 -8.2428 4.1232 20 6 5.4932 -10.0866 3.1119 21 7 6.0746 -10.8304 4.0261 22 14 4.7111 -10.8864 1.6159 23 1 5.7181 -10.9966 0.5302 24 1 4.2230 -12.2415 1.9775 25 1 3.5704 -10.0572 1.1508 26 6 3.6583 -1.1596 0.0001 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 1.5250 -2.8980 -0.9827 31 1 0.3909 -2.2352 0.2141 32 1 1.5604 -4.3794 0.9462 33 1 1.7921 -3.0058 2.0614 34 1 6.0528 -2.2388 0.2389 35 1 6.0727 -1.7078 1.9490 36 1 6.2031 -4.4292 0.9395 37 1 6.1517 -3.9049 2.6454 38 1 3.1050 -6.0176 1.3144 39 1 4.6488 -5.8880 0.4381 40 1 4.4479 -8.3446 1.5273 41 1 6.0973 -11.7947 3.9242 42 1 4.0272 -0.1468 0.1624 43 1 4.0349 -1.5491 -0.9458 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667674293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:04 Heat of formation + Delta-G solvation = -78.088815 kcal Electronic energy + Delta-G solvation = -24347.363614 eV Core-core repulsion = 20812.658168 eV Total energy + Delta-G solvation = -3534.705446 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72562 -40.49131 -39.56076 -36.97254 -35.94230 -34.06512 -33.67820 -32.61784 -31.25745 -29.27194 -28.42062 -26.11347 -24.87939 -23.94375 -22.02189 -21.44691 -21.11855 -20.08642 -20.03236 -18.04819 -17.62644 -17.09435 -16.80398 -16.63295 -16.43346 -16.24582 -15.69742 -15.43795 -15.09550 -14.90699 -14.45513 -14.36524 -14.22631 -14.02455 -13.81800 -13.67996 -13.34279 -13.06602 -12.94733 -12.90866 -12.42279 -12.40458 -12.28722 -12.13452 -12.01336 -11.95277 -11.62046 -11.48099 -11.17920 -10.82361 -10.39852 -10.23559 -9.71668 -9.33185 -8.40391 -6.01381 1.30405 1.36381 1.45485 1.61544 1.97841 2.02148 2.24038 2.63641 3.12913 3.16129 3.41049 3.72384 3.76499 3.83230 4.05207 4.12993 4.20536 4.22503 4.29916 4.38575 4.44051 4.45039 4.51606 4.56229 4.62554 4.72037 4.75681 4.79308 4.85976 4.94137 5.02127 5.11833 5.17567 5.28017 5.35361 5.53199 5.54023 5.87064 5.94645 6.12537 6.41049 6.61295 6.89931 7.16167 7.41263 7.99549 8.77551 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.030668 B = 0.003218 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.771829 B = 8698.015591 C = 9237.523961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.501 3.499 3 O -0.604 6.604 4 N -0.613 5.613 5 C 0.108 3.892 6 C -0.117 4.117 7 C 0.060 3.940 8 H 0.068 0.932 9 C -0.097 4.097 10 H 0.067 0.933 11 C -0.113 4.113 12 C 0.043 3.957 13 N -0.507 5.507 14 C 0.047 3.953 15 C 0.451 3.549 16 O -0.609 6.609 17 N -0.593 5.593 18 C -0.327 4.327 19 H 0.052 0.948 20 C -0.017 4.017 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.228 1.228 26 C 0.128 3.872 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.077 0.923 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.294 15.615 -17.232 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.293 3.707 3 O -0.485 6.485 4 N -0.345 5.345 5 C -0.014 4.014 6 C -0.155 4.155 7 C -0.048 4.048 8 H 0.086 0.914 9 C -0.117 4.117 10 H 0.085 0.915 11 C -0.151 4.151 12 C -0.084 4.084 13 N -0.231 5.231 14 C -0.085 4.085 15 C 0.239 3.761 16 O -0.492 6.492 17 N -0.235 5.235 18 C -0.456 4.456 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.151 1.151 26 C 0.005 3.995 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.793 16.318 -15.959 26.669 hybrid contribution 0.753 -1.128 -0.510 1.449 sum -13.040 15.190 -16.469 25.923 Atomic orbital electron populations 1.22024 0.88408 1.06388 1.06111 1.21667 0.92413 0.82527 0.74142 1.90683 1.72072 1.33028 1.52760 1.48481 1.06675 1.06965 1.72423 1.22056 0.97202 0.82276 0.99823 1.21742 0.93052 1.00976 0.99760 1.22548 0.95528 0.91918 0.94811 0.91411 1.22070 0.95532 0.95274 0.98821 0.91475 1.22176 0.95859 0.94463 1.02613 1.23118 0.89624 0.95496 1.00198 1.64333 1.08902 1.00847 1.49046 1.22036 1.02740 0.88736 0.94954 1.20930 0.83731 0.82391 0.89080 1.90547 1.50641 1.73279 1.34768 1.42022 1.53051 1.06018 1.22398 1.18978 1.34120 0.89586 1.02928 0.92950 1.26145 0.97583 0.95929 1.01877 1.69813 1.44657 1.06500 1.36827 0.85349 0.79863 0.78713 0.77489 1.18230 1.20116 1.15093 1.21432 0.79722 1.00411 0.97891 0.87532 0.88877 0.86847 0.89132 0.86288 0.88604 0.91918 0.89101 0.90934 0.93766 0.93092 0.85988 0.90156 0.77486 0.91189 0.90418 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.35 71.24 0.67 -0.84 16 2 C 0.50 9.40 7.78 87.66 0.68 10.08 16 3 O -0.60 -17.42 16.46 -3.01 -0.05 -17.47 16 4 N -0.61 -9.64 3.01 -818.42 -2.46 -12.10 16 5 C 0.11 1.00 6.05 86.68 0.52 1.52 16 6 C -0.12 -1.71 5.95 30.48 0.18 -1.53 16 7 C 0.06 1.19 1.62 45.35 0.07 1.26 16 8 H 0.07 1.12 7.94 -2.39 -0.02 1.10 16 9 C -0.10 -2.00 2.76 -10.27 -0.03 -2.03 16 10 H 0.07 1.69 8.05 -2.39 -0.02 1.68 16 11 C -0.11 -2.47 6.60 31.27 0.21 -2.27 16 12 C 0.04 1.31 5.78 86.55 0.50 1.81 16 13 N -0.51 -14.89 4.88 -863.78 -4.21 -19.10 16 14 C 0.05 1.38 5.22 85.56 0.45 1.83 16 15 C 0.45 20.21 7.59 87.66 0.66 20.88 16 16 O -0.61 -33.95 14.68 -3.07 -0.05 -34.00 16 17 N -0.59 -27.62 5.09 -306.98 -1.56 -29.19 16 18 C -0.33 -19.13 10.16 84.04 0.85 -18.28 16 19 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 20 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 21 N -0.94 -56.62 13.96 21.66 0.30 -56.31 16 22 Si 0.97 38.11 27.74 68.60 1.90 40.01 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 26 C 0.13 2.29 5.95 85.81 0.51 2.80 16 27 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.11 0.30 6.24 -2.39 -0.01 0.28 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.12 0.47 5.55 -2.38 -0.01 0.45 16 32 H 0.10 1.15 7.71 -2.39 -0.02 1.13 16 33 H 0.06 1.16 8.06 -2.39 -0.02 1.14 16 34 H 0.09 1.58 8.03 -2.39 -0.02 1.56 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.29 7.59 -2.39 -0.02 1.27 16 37 H 0.05 1.96 7.43 -2.39 -0.02 1.94 16 38 H 0.12 2.85 7.63 -2.39 -0.02 2.83 16 39 H 0.08 1.94 7.83 -2.39 -0.02 1.92 16 40 H 0.39 14.79 5.76 -92.71 -0.53 14.26 16 41 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.08 1.71 7.00 -2.39 -0.02 1.69 16 43 H 0.09 1.27 8.11 -2.39 -0.02 1.25 16 Total: -1.00 -84.88 338.08 0.05 -84.82 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.43 Total: 28.57 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 5.75 Total: 14.76 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -7.93 Total: -116.69 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.09 Total: -51.47 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.90 Total: 40.01 kcal Total: -84.88 0.05 -84.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667674293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.736 kcal (2) G-P(sol) polarization free energy of solvation -84.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds