Wall clock time and date at job start Tue Mar 31 2020 03:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 119.99813 * 2 1 4 4 N 1.34779 * 119.99922 * 179.97438 * 2 1 3 5 5 C 1.47168 * 135.99669 * 359.63692 * 4 2 1 6 6 C 1.53191 * 87.73786 * 153.41437 * 5 4 2 7 7 C 1.47168 * 135.99379 * 180.02562 * 4 2 1 8 8 C 1.52620 * 114.02177 * 139.57098 * 6 5 4 9 9 C 1.53321 * 108.89377 * 186.63396 * 8 6 5 10 10 C 1.53027 * 109.16478 * 304.77147 * 9 8 6 11 11 N 1.46813 * 109.80172 * 61.06234 * 10 9 8 12 12 C 1.46901 * 111.00096 * 172.35266 * 11 10 9 13 13 C 1.50704 * 109.47079 * 190.51470 * 12 11 10 14 14 O 1.21283 * 120.00248 * 6.26880 * 13 12 11 15 15 N 1.34783 * 119.99558 * 186.27411 * 13 12 11 16 16 C 1.37097 * 119.99284 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00674 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99737 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00356 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 119.99817 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46830 * 90.00247 * 20 18 16 22 22 H 1.48504 * 109.46972 * 209.99580 * 20 18 16 23 23 H 1.48499 * 109.47105 * 330.00293 * 20 18 16 24 24 C 1.47048 * 111.14996 * 296.41137 * 11 10 9 25 25 H 1.08998 * 109.47484 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47564 * 239.99755 * 1 2 3 27 27 H 1.09002 * 109.47182 * 120.00278 * 1 2 3 28 28 H 1.08999 * 113.49079 * 268.10853 * 5 4 2 29 29 H 1.09005 * 113.49285 * 38.61421 * 5 4 2 30 30 H 1.09003 * 113.49098 * 321.36987 * 7 4 2 31 31 H 1.08999 * 113.49706 * 91.82783 * 7 4 2 32 32 H 1.08996 * 109.56391 * 306.45885 * 8 6 5 33 33 H 1.09001 * 109.56218 * 66.81440 * 8 6 5 34 34 H 1.08997 * 109.52138 * 184.86722 * 9 8 6 35 35 H 1.08997 * 109.57227 * 64.70663 * 9 8 6 36 36 H 1.08995 * 109.41626 * 300.96043 * 10 9 8 37 37 H 1.09002 * 109.35982 * 181.12607 * 10 9 8 38 38 H 1.09007 * 109.47127 * 310.51028 * 12 11 10 39 39 H 1.09002 * 109.47486 * 70.51329 * 12 11 10 40 40 H 0.96997 * 120.00573 * 359.97438 * 15 13 12 41 41 H 0.97001 * 120.00682 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.49703 * 299.15992 * 24 11 10 43 43 H 1.09002 * 109.53021 * 179.06282 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8248 -2.5952 0.0076 6 6 3.1638 -2.8702 -0.6838 7 6 3.5956 -1.5727 0.0012 8 6 3.8835 -4.1147 -0.1714 9 6 5.2723 -4.1863 -0.8170 10 6 5.1214 -4.1433 -2.3393 11 7 4.4831 -2.8835 -2.7404 12 6 4.4886 -2.7325 -4.2016 13 6 4.0671 -1.3316 -4.5634 14 8 3.8996 -0.5046 -3.6923 15 7 3.8762 -0.9978 -5.8553 16 6 3.4923 0.2765 -6.1843 17 1 3.3424 1.0127 -5.4085 18 6 3.2959 0.6209 -7.5161 19 7 2.9274 1.8421 -7.8316 20 14 3.5559 -0.6524 -8.8581 21 1 2.2808 -1.3694 -9.1138 22 1 4.0015 0.0242 -10.1027 23 1 4.5919 -1.6240 -8.4247 24 6 3.1165 -2.7875 -2.2059 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5139 0.8900 27 1 -0.3634 -0.5139 -0.8900 28 1 1.7571 -3.0211 1.0087 29 1 0.9583 -2.8300 -0.6107 30 1 4.2287 -0.9419 -0.6228 31 1 4.0042 -1.7229 1.0005 32 1 3.9872 -4.0562 0.9121 33 1 3.3109 -5.0031 -0.4377 34 1 5.7620 -5.1154 -0.5257 35 1 5.8728 -3.3388 -0.4865 36 1 4.5061 -4.9815 -2.6661 37 1 6.1057 -4.2142 -2.8021 38 1 5.4927 -2.9196 -4.5825 39 1 3.7935 -3.4466 -4.6434 40 1 4.0104 -1.6591 -6.5521 41 1 2.7900 2.0825 -8.7613 42 1 2.5146 -3.6080 -2.5964 43 1 2.6743 -1.8371 -2.5050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675642472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:04 Heat of formation + Delta-G solvation = -51.530752 kcal Electronic energy + Delta-G solvation = -24910.250647 eV Core-core repulsion = 21376.696845 eV Total energy + Delta-G solvation = -3533.553802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.05054 -40.42298 -39.50496 -37.77826 -35.99176 -34.05278 -33.71520 -32.10596 -30.35855 -29.23084 -27.08553 -26.84035 -26.38877 -24.13617 -22.49587 -21.26389 -20.30959 -20.21251 -19.32275 -17.92554 -17.72221 -17.11890 -16.80861 -16.72335 -16.39907 -16.25382 -15.46938 -15.41408 -15.32398 -14.91306 -14.59600 -14.41021 -13.99705 -13.87120 -13.77683 -13.54590 -13.35239 -13.15770 -13.13725 -12.96016 -12.82304 -12.49731 -12.43250 -12.00066 -11.90073 -11.59724 -11.50803 -11.39005 -11.12023 -10.79408 -10.34589 -10.23998 -9.70584 -9.11374 -8.42647 -6.04020 1.27225 1.33643 1.42798 1.60959 1.92530 1.97236 2.21414 2.61205 3.06537 3.13168 3.42045 3.62819 3.77189 3.94945 4.11939 4.16706 4.25810 4.32036 4.34342 4.41032 4.47408 4.50624 4.53368 4.57302 4.68446 4.75875 4.76872 4.85408 4.88648 4.96340 5.00689 5.08834 5.18791 5.21243 5.44077 5.52282 5.55921 5.90494 6.06882 6.32748 6.59458 6.79505 6.88435 7.12299 7.39533 7.99912 8.75882 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.004998 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.958312 B = 5600.679402 C = 7063.826693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.518 3.482 3 O -0.616 6.616 4 N -0.652 5.652 5 C 0.118 3.882 6 C -0.077 4.077 7 C 0.109 3.891 8 C -0.092 4.092 9 C -0.113 4.113 10 C 0.053 3.947 11 N -0.541 5.541 12 C 0.058 3.942 13 C 0.446 3.554 14 O -0.604 6.604 15 N -0.594 5.594 16 C -0.327 4.327 17 H 0.045 0.955 18 C -0.018 4.018 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.230 1.230 24 C 0.083 3.917 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.051 0.949 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 -24.322 13.915 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.310 3.690 3 O -0.499 6.499 4 N -0.387 5.387 5 C -0.004 4.004 6 C -0.078 4.078 7 C -0.014 4.014 8 C -0.130 4.130 9 C -0.151 4.151 10 C -0.074 4.074 11 N -0.266 5.266 12 C -0.073 4.073 13 C 0.234 3.766 14 O -0.487 6.487 15 N -0.237 5.237 16 C -0.457 4.457 17 H 0.063 0.937 18 C -0.216 4.216 19 N -0.579 5.579 20 Si 0.789 3.211 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.153 1.153 24 C -0.045 4.045 25 H 0.103 0.897 26 H 0.142 0.858 27 H 0.116 0.884 28 H 0.147 0.853 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.137 0.863 39 H 0.097 0.903 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.886 -22.485 14.560 26.803 hybrid contribution -0.279 0.381 -1.598 1.666 sum -1.165 -22.105 12.962 25.651 Atomic orbital electron populations 1.21828 0.87608 1.05683 1.06144 1.21339 0.92057 0.81196 0.74380 1.90699 1.72540 1.33129 1.53539 1.49817 1.10280 1.06576 1.71987 1.23392 0.97720 0.76709 1.02573 1.21772 0.96878 0.95501 0.93688 1.23034 0.83865 0.94237 1.00234 1.21456 0.95428 0.94989 1.01092 1.21609 0.97397 1.02841 0.93259 1.22253 0.99358 0.88240 0.97561 1.61375 1.19689 1.36955 1.08565 1.21800 1.03828 0.91732 0.89970 1.21107 0.81717 0.91739 0.82017 1.90603 1.55444 1.53669 1.49025 1.42035 1.63427 1.10986 1.07214 1.18932 1.44916 0.88193 0.93609 0.93665 1.26183 0.96080 0.99340 0.99982 1.69827 1.47211 1.20825 1.20082 0.85309 0.80383 0.78271 0.77141 1.17897 1.19966 1.15320 1.21674 0.89124 1.00209 0.93481 0.89734 0.85808 0.88416 0.85255 0.88992 0.94926 0.87919 0.88977 0.88892 0.88258 0.92912 0.92979 0.90117 0.86330 0.90340 0.77528 0.91158 0.93102 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 10.15 71.24 0.72 -2.93 16 2 C 0.52 18.87 8.19 87.66 0.72 19.59 16 3 O -0.62 -30.74 17.86 -3.02 -0.05 -30.80 16 4 N -0.65 -19.53 3.47 -857.46 -2.97 -22.51 16 5 C 0.12 2.01 7.60 83.42 0.63 2.64 16 6 C -0.08 -1.63 0.95 -52.42 -0.05 -1.68 16 7 C 0.11 3.21 7.70 83.34 0.64 3.85 16 8 C -0.09 -1.10 5.23 30.58 0.16 -0.94 16 9 C -0.11 -1.62 6.08 30.71 0.19 -1.43 16 10 C 0.05 0.96 5.40 86.33 0.47 1.43 16 11 N -0.54 -15.79 4.36 -901.54 -3.93 -19.72 16 12 C 0.06 1.81 5.45 85.56 0.47 2.27 16 13 C 0.45 21.16 7.34 87.66 0.64 21.81 16 14 O -0.60 -35.87 14.26 -3.04 -0.04 -35.91 16 15 N -0.59 -29.27 5.09 -306.98 -1.56 -30.83 16 16 C -0.33 -20.16 10.16 84.04 0.85 -19.31 16 17 H 0.05 3.38 7.39 -2.91 -0.02 3.35 16 18 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 19 N -0.94 -58.98 13.96 21.66 0.30 -58.68 16 20 Si 0.97 39.91 27.74 68.60 1.90 41.81 16 21 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 24 C 0.08 2.40 4.30 86.11 0.37 2.77 16 25 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 26 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.13 1.17 8.10 -2.39 -0.02 1.15 16 29 H 0.09 1.34 8.12 -2.38 -0.02 1.32 16 30 H 0.03 1.35 8.11 -2.39 -0.02 1.33 16 31 H 0.10 2.37 8.01 -2.39 -0.02 2.35 16 32 H 0.09 0.75 8.02 -2.39 -0.02 0.73 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.36 7.97 -2.39 -0.02 1.34 16 38 H 0.12 3.08 7.95 -2.38 -0.02 3.06 16 39 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 40 H 0.39 15.72 5.76 -92.71 -0.53 15.18 16 41 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.04 1.76 5.90 -2.39 -0.01 1.75 16 Total: -1.00 -97.17 348.37 0.34 -96.83 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.41 Total: 32.30 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 6.28 Total: 27.50 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -8.16 Total: -131.74 kcal Atomic # 8 Polarization: -66.61 SS G_CDS: -0.10 Total: -66.71 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.90 Total: 41.81 kcal Total: -97.17 0.34 -96.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675642472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.304 kcal (2) G-P(sol) polarization free energy of solvation -97.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds