Wall clock time and date at job start Tue Mar 31 2020 03:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 120.00268 * 2 1 4 4 C 1.53003 * 109.47188 * 275.30311 * 3 2 1 5 5 H 1.08996 * 112.96044 * 49.72659 * 4 3 2 6 6 C 1.53945 * 113.77159 * 181.40205 * 4 3 2 7 7 C 1.53943 * 86.29106 * 137.90949 * 6 4 3 8 8 N 1.47579 * 86.11670 * 336.39197 * 7 6 4 9 9 C 1.36942 * 134.49645 * 204.63161 * 8 7 6 10 10 H 1.08004 * 119.99229 * 54.33097 * 9 8 7 11 11 C 1.38806 * 120.00603 * 234.33132 * 9 8 7 12 12 N 1.31616 * 120.00171 * 187.74090 * 11 9 8 13 13 Si 1.86800 * 119.99720 * 7.74285 * 11 9 8 14 14 H 1.48495 * 109.47654 * 84.91942 * 13 11 9 15 15 H 1.48506 * 109.47160 * 204.91881 * 13 11 9 16 16 H 1.48506 * 109.47157 * 324.91571 * 13 11 9 17 17 C 1.34778 * 119.99650 * 180.02562 * 2 1 3 18 18 O 1.21358 * 119.99681 * 185.99192 * 17 2 1 19 19 C 1.49447 * 120.00227 * 5.99502 * 17 2 1 20 20 O 1.21349 * 120.00189 * 6.77280 * 19 17 2 21 21 N 1.34776 * 120.00003 * 186.78233 * 19 17 2 22 22 C 1.46504 * 119.99917 * 179.97438 * 21 19 17 23 23 C 1.53001 * 109.46908 * 179.97438 * 22 21 19 24 24 C 1.52995 * 117.49928 * 243.74385 * 23 22 21 25 25 C 1.53002 * 117.49734 * 175.08561 * 23 22 21 26 26 H 1.08993 * 109.47377 * 95.08813 * 1 2 3 27 27 H 1.09001 * 109.47058 * 215.09223 * 1 2 3 28 28 H 1.09009 * 109.46639 * 335.08818 * 1 2 3 29 29 H 1.08997 * 109.47089 * 155.30677 * 3 2 1 30 30 H 1.09001 * 109.47318 * 35.30515 * 3 2 1 31 31 H 1.08993 * 113.74303 * 252.25749 * 6 4 3 32 32 H 1.09002 * 113.74086 * 23.45587 * 6 4 3 33 33 H 1.08999 * 113.77174 * 90.69518 * 7 6 4 34 34 H 1.08994 * 113.77175 * 221.98375 * 7 6 4 35 35 H 0.97005 * 119.99912 * 179.97438 * 12 11 9 36 36 H 0.96999 * 120.00035 * 359.97438 * 21 19 17 37 37 H 1.08994 * 109.47227 * 299.99585 * 22 21 19 38 38 H 1.08996 * 109.47045 * 59.99965 * 22 21 19 39 39 H 1.08998 * 115.55050 * 29.42602 * 23 22 21 40 40 H 1.09001 * 117.50246 * 0.02562 * 24 23 22 41 41 H 1.09005 * 117.49597 * 145.02521 * 24 23 22 42 42 H 1.09003 * 117.50058 * 214.98404 * 25 23 22 43 43 H 1.09002 * 117.49751 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3371 1.7770 -1.4363 5 1 1.3925 1.7798 -1.9801 6 6 3.1250 3.0943 -1.5546 7 6 3.8058 2.4606 -2.7813 8 7 3.4525 1.1599 -2.1800 9 6 3.9569 -0.1097 -2.2743 10 1 5.0034 -0.2909 -2.0777 11 6 3.1235 -1.1637 -2.6226 12 7 3.5684 -2.4010 -2.5656 13 14 1.3705 -0.8258 -3.1722 14 1 1.3574 -0.5199 -4.6252 15 1 0.5304 -2.0221 -2.9107 16 1 0.8298 0.3333 -2.4174 17 6 2.1388 -1.1673 -0.0005 18 8 3.3474 -1.1702 0.1092 19 6 1.3977 -2.4579 -0.1363 20 8 0.2067 -2.4521 -0.3689 21 7 2.0520 -3.6283 -0.0001 22 6 1.3253 -4.8935 -0.1326 23 6 2.2943 -6.0611 0.0642 24 6 2.5239 -6.9966 -1.1245 25 6 1.7054 -7.4732 0.0780 26 1 -0.3634 -0.0911 -1.0235 27 1 -0.3633 -0.8409 0.5908 28 1 -0.3633 0.9321 0.4329 29 1 3.1878 1.1164 0.4293 30 1 1.6530 2.0027 0.5939 31 1 2.5038 3.9572 -1.7944 32 1 3.8022 3.2770 -0.7202 33 1 3.2935 2.6634 -3.7218 34 1 4.8787 2.6457 -2.8329 35 1 2.9858 -3.1376 -2.8087 36 1 3.0040 -3.6329 0.1856 37 1 0.5396 -4.9419 0.6212 38 1 0.8803 -4.9545 -1.1257 39 1 3.1421 -5.8630 0.7200 40 1 1.9851 -6.7800 -2.0469 41 1 3.5229 -7.4142 -1.2505 42 1 2.1660 -8.2042 0.7425 43 1 0.6276 -7.5702 -0.0528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691066317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:23 Heat of formation + Delta-G solvation = 24.280717 kcal Electronic energy + Delta-G solvation = -25980.084120 eV Core-core repulsion = 22449.817750 eV Total energy + Delta-G solvation = -3530.266370 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.72919 -40.11075 -39.02892 -38.38763 -36.62134 -34.95583 -34.32396 -30.52909 -29.91530 -28.75863 -27.44577 -25.27807 -24.77863 -23.30240 -22.99769 -22.03419 -21.12475 -20.57642 -18.72997 -18.39376 -18.00455 -17.56310 -17.10205 -16.81483 -16.44397 -16.04619 -15.57123 -15.40953 -15.04876 -15.01507 -14.72853 -14.58387 -14.10936 -14.05252 -13.83083 -13.42201 -13.32389 -13.10878 -12.50923 -12.49811 -12.46664 -12.39020 -12.16698 -11.88707 -11.76833 -11.49451 -11.40707 -11.30811 -11.14896 -10.48048 -10.20037 -10.10632 -9.47237 -8.34373 -8.05938 -5.65822 0.65274 1.23712 1.33443 1.41473 1.52895 2.36304 2.48253 2.60485 2.88552 3.15932 3.23635 3.56648 3.62731 3.92021 3.95437 4.06405 4.23017 4.28651 4.36162 4.47419 4.52097 4.55244 4.60948 4.66238 4.75620 4.76648 4.86669 4.94217 4.99284 5.02416 5.10437 5.13471 5.16094 5.23367 5.35250 5.62184 5.70018 5.99469 6.11543 6.31351 6.41015 6.71026 6.87504 7.27756 7.54424 8.53562 9.08812 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022547 B = 0.005947 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.550639 B = 4707.277326 C = 5087.010657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.597 5.597 3 C 0.123 3.877 4 C 0.096 3.904 5 H 0.055 0.945 6 C -0.112 4.112 7 C 0.094 3.906 8 N -0.637 5.637 9 C -0.208 4.208 10 H 0.024 0.976 11 C 0.022 3.978 12 N -0.909 5.909 13 Si 0.877 3.123 14 H -0.318 1.318 15 H -0.309 1.309 16 H -0.201 1.201 17 C 0.495 3.505 18 O -0.489 6.489 19 C 0.505 3.495 20 O -0.552 6.552 21 N -0.684 5.684 22 C 0.154 3.846 23 C -0.179 4.179 24 C -0.185 4.185 25 C -0.143 4.143 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.251 0.749 36 H 0.413 0.587 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 0.232 8.855 11.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C 0.001 3.999 4 C -0.009 4.009 5 H 0.072 0.928 6 C -0.151 4.151 7 C -0.030 4.030 8 N -0.366 5.366 9 C -0.337 4.337 10 H 0.042 0.958 11 C -0.177 4.177 12 N -0.551 5.551 13 Si 0.708 3.292 14 H -0.248 1.248 15 H -0.237 1.237 16 H -0.125 1.125 17 C 0.277 3.723 18 O -0.361 6.361 19 C 0.287 3.713 20 O -0.432 6.432 21 N -0.335 5.335 22 C 0.031 3.969 23 C -0.198 4.198 24 C -0.222 4.222 25 C -0.181 4.181 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.250 0.750 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.149 -0.174 8.745 11.296 hybrid contribution -0.215 -0.567 -1.218 1.361 sum -7.364 -0.741 7.526 10.556 Atomic orbital electron populations 1.22174 0.77894 1.04468 1.01685 1.47589 1.07959 1.05325 1.72352 1.21903 0.97533 0.83359 0.97121 1.23417 0.92787 0.92217 0.92490 0.92824 1.23355 0.98578 0.95192 0.97957 1.22938 0.98615 0.85799 0.95661 1.46432 1.35624 1.04245 1.50311 1.17835 0.93662 0.81996 1.40249 0.95813 1.26107 0.99425 0.95523 0.96661 1.69903 1.36183 0.98326 1.50726 0.87148 0.84464 0.79849 0.77729 1.24799 1.23670 1.12482 1.19812 0.87455 0.85363 0.79691 1.90787 1.13854 1.86677 1.44799 1.20429 0.86964 0.86480 0.77463 1.90622 1.15536 1.88000 1.49025 1.45702 1.13742 1.04855 1.69241 1.20993 0.94202 0.80724 1.00950 1.22354 1.02093 0.91044 1.04272 1.23111 1.02468 1.03566 0.93026 1.23074 1.00437 0.94252 1.00291 0.94909 0.90240 0.87567 0.91200 0.86257 0.88639 0.89019 0.94467 0.93396 0.93920 0.75019 0.89914 0.93517 0.86569 0.89823 0.87834 0.86242 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.64 8.61 127.77 1.10 3.74 16 2 N -0.60 -23.57 1.72 -848.34 -1.46 -25.03 16 3 C 0.12 4.33 5.40 86.38 0.47 4.80 16 4 C 0.10 3.66 2.94 45.09 0.13 3.79 16 5 H 0.05 2.12 5.87 -2.39 -0.01 2.11 16 6 C -0.11 -3.32 7.86 31.25 0.25 -3.08 16 7 C 0.09 3.60 8.93 86.48 0.77 4.37 16 8 N -0.64 -30.66 2.66 -694.18 -1.85 -32.51 16 9 C -0.21 -12.19 8.71 84.03 0.73 -11.46 16 10 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 11 C 0.02 1.32 2.95 84.86 0.25 1.57 16 12 N -0.91 -55.36 13.78 21.65 0.30 -55.06 16 13 Si 0.88 47.18 22.10 68.60 1.52 48.69 16 14 H -0.32 -18.04 7.11 99.48 0.71 -17.33 16 15 H -0.31 -17.67 6.70 99.48 0.67 -17.01 16 16 H -0.20 -9.50 2.46 99.48 0.24 -9.26 16 17 C 0.50 22.92 4.19 87.27 0.37 23.28 16 18 O -0.49 -25.67 12.99 -3.27 -0.04 -25.71 16 19 C 0.50 22.55 6.34 87.27 0.55 23.11 16 20 O -0.55 -25.09 12.47 -3.24 -0.04 -25.13 16 21 N -0.68 -27.23 5.55 -464.42 -2.58 -29.81 16 22 C 0.15 4.99 5.96 86.38 0.51 5.50 16 23 C -0.18 -4.63 5.84 -10.79 -0.06 -4.69 16 24 C -0.18 -4.55 10.18 30.62 0.31 -4.24 16 25 C -0.14 -2.76 10.25 30.62 0.31 -2.45 16 26 H 0.03 1.22 5.65 -2.39 -0.01 1.21 16 27 H 0.08 2.68 6.02 -2.39 -0.01 2.67 16 28 H 0.11 2.47 7.89 -2.38 -0.02 2.45 16 29 H 0.07 2.82 7.20 -2.39 -0.02 2.81 16 30 H 0.12 2.93 7.94 -2.39 -0.02 2.91 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.51 8.10 -2.39 -0.02 2.49 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 36 H 0.41 16.90 7.89 -92.71 -0.73 16.17 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.05 1.70 7.87 -2.39 -0.02 1.68 16 39 H 0.12 2.90 8.04 -2.39 -0.02 2.88 16 40 H 0.08 2.26 8.03 -2.39 -0.02 2.24 16 41 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -76.09 329.56 1.33 -74.76 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.22 Total: 25.54 kcal Atomic # 6 Polarization: 38.57 SS G_CDS: 5.70 Total: 44.27 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -5.58 Total: -142.42 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.08 Total: -50.84 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.52 Total: 48.69 kcal Total: -76.09 1.33 -74.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691066317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.044 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds