Wall clock time and date at job start Tue Mar 31 2020 03:57:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34774 * 120.00282 * 2 1
4 4 O 1.21283 * 119.99649 * 354.86208 * 3 2 1
5 5 C 1.50695 * 120.00288 * 174.85663 * 3 2 1
6 6 C 1.50697 * 115.56189 * 330.35815 * 5 3 2
7 7 O 1.21280 * 120.00117 * 89.45643 * 6 5 3
8 8 N 1.34772 * 120.00007 * 269.45430 * 6 5 3
9 9 C 1.46500 * 120.00209 * 185.08818 * 8 6 5
10 10 C 1.53001 * 109.47324 * 179.97438 * 9 8 6
11 11 H 1.09002 * 110.88529 * 302.57785 * 10 9 8
12 12 C 1.55156 * 111.00680 * 178.64864 * 10 9 8
13 13 C 1.54325 * 102.94433 * 206.42354 * 12 10 9
14 14 N 1.47029 * 107.26816 * 22.19334 * 13 12 10
15 15 C 1.36933 * 125.64551 * 181.09488 * 14 13 12
16 16 H 1.07997 * 120.00232 * 179.97438 * 15 14 13
17 17 C 1.38820 * 120.00152 * 359.95661 * 15 14 13
18 18 N 1.31618 * 119.99777 * 359.97438 * 17 15 14
19 19 Si 1.86796 * 120.00098 * 180.02562 * 17 15 14
20 20 H 1.48497 * 109.47067 * 90.00011 * 19 17 15
21 21 H 1.48500 * 109.47079 * 210.00456 * 19 17 15
22 22 H 1.48502 * 109.47057 * 330.00019 * 19 17 15
23 23 C 1.47424 * 108.70344 * 1.05687 * 14 13 12
24 24 C 1.53005 * 117.50066 * 184.66502 * 5 3 2
25 25 C 1.53003 * 117.49570 * 116.04291 * 5 3 2
26 26 H 1.08997 * 109.47597 * 59.99852 * 1 2 3
27 27 H 1.09003 * 109.47189 * 179.97438 * 1 2 3
28 28 H 1.09004 * 109.47062 * 299.99594 * 1 2 3
29 29 H 0.97000 * 120.00024 * 180.02562 * 2 1 3
30 30 H 0.97001 * 120.00314 * 5.08472 * 8 6 5
31 31 H 1.09002 * 109.47221 * 299.99518 * 9 8 6
32 32 H 1.09002 * 109.47065 * 60.00227 * 9 8 6
33 33 H 1.08997 * 110.71713 * 324.78883 * 12 10 9
34 34 H 1.08994 * 110.71792 * 88.05903 * 12 10 9
35 35 H 1.08998 * 109.88341 * 262.77486 * 13 12 10
36 36 H 1.09001 * 109.88185 * 141.60544 * 13 12 10
37 37 H 0.97002 * 119.99975 * 179.97438 * 18 17 15
38 38 H 1.08994 * 110.36366 * 217.02763 * 23 14 13
39 39 H 1.09002 * 110.45645 * 94.75779 * 23 14 13
40 40 H 1.08994 * 117.49826 * 145.02296 * 24 5 3
41 41 H 1.08998 * 117.49542 * 0.02562 * 24 5 3
42 42 H 1.08995 * 117.49990 * 0.02562 * 25 5 3
43 43 H 1.08999 * 117.49602 * 214.97995 * 25 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 1.5362 2.2154 -0.0941
5 6 3.6413 1.1698 0.1170
6 6 4.2354 0.0207 0.8901
7 8 4.5352 -1.0052 0.3169
8 7 4.4334 0.1330 2.2184
9 6 5.1122 -0.9387 2.9511
10 6 5.2080 -0.5634 4.4313
11 1 5.7308 0.3845 4.5588
12 6 5.8924 -1.6912 5.2479
13 6 5.3103 -1.4949 6.6636
14 7 4.0453 -0.7600 6.5174
15 6 3.2273 -0.3673 7.5429
16 1 2.3154 0.1708 7.3306
17 6 3.5700 -0.6614 8.8556
18 7 4.6809 -1.3180 9.1144
19 14 2.4538 -0.1264 10.2546
20 1 1.4637 -1.1970 10.5350
21 1 3.2691 0.1246 11.4701
22 1 1.7412 1.1187 9.8708
23 6 3.8039 -0.5150 5.0838
24 6 4.3395 2.5273 0.2211
25 6 4.4413 1.7116 -1.0694
26 1 -0.3634 0.5138 -0.8899
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8901
29 1 1.9500 -0.8400 -0.0004
30 1 4.1266 0.9236 2.6895
31 1 4.5470 -1.8648 2.8467
32 1 6.1148 -1.0772 2.5462
33 1 5.6235 -2.6709 4.8528
34 1 6.9744 -1.5605 5.2543
35 1 6.0056 -0.9184 7.2737
36 1 5.1243 -2.4645 7.1257
37 1 4.9206 -1.5232 10.0317
38 1 3.3511 0.4656 4.9376
39 1 3.1647 -1.2932 4.6667
40 1 5.2284 2.5892 0.8488
41 1 3.7120 3.4184 0.2055
42 1 3.8809 2.0665 -1.9342
43 1 5.3972 1.2370 -1.2906
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691162502.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:57:20
Heat of formation + Delta-G solvation = -24.590925 kcal
Electronic energy + Delta-G solvation = -24069.135045 eV
Core-core repulsion = 20536.749441 eV
Total energy + Delta-G solvation = -3532.385604 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.91431 -39.20712 -37.73979 -36.37998 -34.82383 -34.70220 -32.51871 -29.91251
-28.49367 -27.88881 -25.85293 -24.59188 -23.35651 -22.78818 -21.66877 -20.34013
-19.98203 -19.64073 -18.34899 -16.88170 -16.63024 -16.17877 -15.93410 -15.48686
-15.27413 -14.81319 -14.69569 -14.42937 -14.06698 -13.64220 -13.24608 -13.13532
-13.06299 -12.51472 -12.40635 -12.05796 -11.93506 -11.80331 -11.50481 -11.43374
-10.96618 -10.91647 -10.81941 -10.48571 -10.32261 -10.16569 -10.03271 -9.93023
-9.76057 -9.68813 -9.39832 -9.11568 -8.62962 -6.86810 -5.74240 -3.07946
2.10210 2.33832 2.87008 2.91403 3.38269 3.43416 3.45191 3.50341
4.33616 4.34993 4.46295 4.50898 4.52673 4.98427 5.02822 5.16370
5.25007 5.27346 5.31987 5.36111 5.49918 5.50769 5.55984 5.62148
5.76192 5.82372 5.95422 5.98802 6.10095 6.28153 6.30164 6.44966
6.47462 6.61997 6.84860 7.15563 7.36328 7.52873 7.59215 7.79500
7.87544 8.01731 8.22872 9.19175 9.79459 10.45085 11.37491
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.018222 B = 0.003529 C = 0.003211
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1536.240074 B = 7931.647075 C = 8717.608938
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.728 5.728
3 C 0.562 3.438
4 O -0.532 6.532
5 C -0.202 4.202
6 C 0.549 3.451
7 O -0.535 6.535
8 N -0.713 5.713
9 C 0.131 3.869
10 C -0.119 4.119
11 H 0.080 0.920
12 C -0.134 4.134
13 C 0.177 3.823
14 N -0.606 5.606
15 C -0.230 4.230
16 H 0.077 0.923
17 C -0.007 4.007
18 N -0.922 5.922
19 Si 0.912 3.088
20 H -0.289 1.289
21 H -0.290 1.290
22 H -0.281 1.281
23 C 0.142 3.858
24 C -0.132 4.132
25 C -0.118 4.118
26 H 0.061 0.939
27 H 0.078 0.922
28 H 0.063 0.937
29 H 0.408 0.592
30 H 0.405 0.595
31 H 0.071 0.929
32 H 0.067 0.933
33 H 0.059 0.941
34 H 0.062 0.938
35 H 0.047 0.953
36 H 0.043 0.957
37 H 0.252 0.748
38 H 0.035 0.965
39 H 0.018 0.982
40 H 0.111 0.889
41 H 0.118 0.882
42 H 0.109 0.891
43 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.396 3.434 -19.196 19.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.379 5.379
3 C 0.347 3.653
4 O -0.409 6.409
5 C -0.208 4.208
6 C 0.333 3.667
7 O -0.412 6.412
8 N -0.363 5.363
9 C 0.008 3.992
10 C -0.138 4.138
11 H 0.099 0.901
12 C -0.173 4.173
13 C 0.052 3.948
14 N -0.332 5.332
15 C -0.359 4.359
16 H 0.095 0.905
17 C -0.204 4.204
18 N -0.569 5.569
19 Si 0.742 3.258
20 H -0.216 1.216
21 H -0.216 1.216
22 H -0.207 1.207
23 C 0.016 3.984
24 C -0.170 4.170
25 C -0.156 4.156
26 H 0.080 0.920
27 H 0.097 0.903
28 H 0.082 0.918
29 H 0.243 0.757
30 H 0.240 0.760
31 H 0.089 0.911
32 H 0.086 0.914
33 H 0.078 0.922
34 H 0.081 0.919
35 H 0.065 0.935
36 H 0.061 0.939
37 H 0.063 0.937
38 H 0.053 0.947
39 H 0.036 0.964
40 H 0.129 0.871
41 H 0.137 0.863
42 H 0.128 0.872
43 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -0.632 3.414 -19.379 19.688
hybrid contribution -0.556 0.068 1.138 1.269
sum -1.188 3.482 -18.241 18.608
Atomic orbital electron populations
1.21600 0.78914 1.02657 1.02497 1.45751 1.08106 1.08852 1.75230
1.18946 0.86730 0.83844 0.75794 1.90716 1.69121 1.31444 1.49599
1.21523 0.93184 0.98345 1.07759 1.19159 0.78270 0.86963 0.82265
1.90721 1.51428 1.29611 1.69407 1.46085 1.59216 1.23505 1.07526
1.21480 0.96849 0.89863 0.91000 1.22629 0.99529 1.00166 0.91516
0.90118 1.22861 0.99140 0.96779 0.98542 1.21155 0.87158 0.96747
0.89695 1.44470 1.23244 1.65826 0.99658 1.19055 1.01523 1.30336
0.84951 0.90495 1.24801 0.97738 1.00610 0.97221 1.69962 1.23833
1.44666 1.18453 0.86120 0.79537 0.78168 0.81950 1.21590 1.21638
1.20679 1.21552 0.92874 0.97673 0.86307 1.23176 1.01490 0.92343
0.99941 1.23012 1.00581 1.00301 0.91717 0.92021 0.90342 0.91833
0.75733 0.75969 0.91094 0.91439 0.92185 0.91920 0.93517 0.93872
0.93736 0.94702 0.96407 0.87105 0.86328 0.87235 0.87075
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.77 10.71 59.85 0.64 1.41 16
2 N -0.73 -7.82 5.58 -67.08 -0.37 -8.19 16
3 C 0.56 6.96 7.41 -10.99 -0.08 6.87 16
4 O -0.53 -7.94 16.28 5.56 0.09 -7.85 16
5 C -0.20 -2.18 2.38 -156.81 -0.37 -2.55 16
6 C 0.55 6.78 6.09 -10.99 -0.07 6.72 16
7 O -0.53 -8.00 16.87 5.56 0.09 -7.90 16
8 N -0.71 -8.55 5.40 -60.29 -0.33 -8.87 16
9 C 0.13 1.74 5.13 -4.04 -0.02 1.72 16
10 C -0.12 -1.87 3.10 -88.47 -0.27 -2.14 16
11 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
12 C -0.13 -2.35 6.42 -24.90 -0.16 -2.51 16
13 C 0.18 4.19 5.37 -3.06 -0.02 4.17 16
14 N -0.61 -15.14 3.39 -170.07 -0.58 -15.72 16
15 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16
16 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16
17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16
18 N -0.92 -26.83 10.31 55.49 0.57 -26.26 16
19 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16
20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16
22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16
23 C 0.14 2.78 6.41 -2.53 -0.02 2.77 16
24 C -0.13 -1.15 9.74 -26.73 -0.26 -1.41 16
25 C -0.12 -1.03 9.94 -26.73 -0.27 -1.29 16
26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
29 H 0.41 4.19 7.88 -40.82 -0.32 3.87 16
30 H 0.41 4.52 8.34 -40.82 -0.34 4.18 16
31 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16
32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
33 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16
34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
35 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16
36 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16
37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16
39 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16
40 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16
41 H 0.12 1.07 7.68 -51.93 -0.40 0.67 16
42 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16
43 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16
LS Contribution 357.64 15.07 5.39 5.39
Total: -1.00 -33.14 357.64 -8.16 -41.30
By element:
Atomic # 1 Polarization: 11.11 SS G_CDS: -6.86 Total: 4.25 kcal
Atomic # 6 Polarization: 8.07 SS G_CDS: -1.14 Total: 6.93 kcal
Atomic # 7 Polarization: -58.34 SS G_CDS: -0.70 Total: -59.04 kcal
Atomic # 8 Polarization: -15.93 SS G_CDS: 0.18 Total: -15.75 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -33.14 -8.16 -41.30 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691162502.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.705 kcal
(2) G-P(sol) polarization free energy of solvation -33.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.432 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.591 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds