Wall clock time and date at job start Tue Mar 31 2020 03:57:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34774 * 120.00282 * 2 1
4 4 O 1.21283 * 119.99649 * 354.86208 * 3 2 1
5 5 C 1.50695 * 120.00288 * 174.85663 * 3 2 1
6 6 C 1.50697 * 115.56189 * 330.35815 * 5 3 2
7 7 O 1.21280 * 120.00117 * 89.45643 * 6 5 3
8 8 N 1.34772 * 120.00007 * 269.45430 * 6 5 3
9 9 C 1.46500 * 120.00209 * 185.08818 * 8 6 5
10 10 C 1.53001 * 109.47324 * 179.97438 * 9 8 6
11 11 H 1.09002 * 110.88529 * 302.57785 * 10 9 8
12 12 C 1.55156 * 111.00680 * 178.64864 * 10 9 8
13 13 C 1.54325 * 102.94433 * 206.42354 * 12 10 9
14 14 N 1.47029 * 107.26816 * 22.19334 * 13 12 10
15 15 C 1.36933 * 125.64551 * 181.09488 * 14 13 12
16 16 H 1.07997 * 120.00232 * 179.97438 * 15 14 13
17 17 C 1.38820 * 120.00152 * 359.95661 * 15 14 13
18 18 N 1.31618 * 119.99777 * 359.97438 * 17 15 14
19 19 Si 1.86796 * 120.00098 * 180.02562 * 17 15 14
20 20 H 1.48497 * 109.47067 * 90.00011 * 19 17 15
21 21 H 1.48500 * 109.47079 * 210.00456 * 19 17 15
22 22 H 1.48502 * 109.47057 * 330.00019 * 19 17 15
23 23 C 1.47424 * 108.70344 * 1.05687 * 14 13 12
24 24 C 1.53005 * 117.50066 * 184.66502 * 5 3 2
25 25 C 1.53003 * 117.49570 * 116.04291 * 5 3 2
26 26 H 1.08997 * 109.47597 * 59.99852 * 1 2 3
27 27 H 1.09003 * 109.47189 * 179.97438 * 1 2 3
28 28 H 1.09004 * 109.47062 * 299.99594 * 1 2 3
29 29 H 0.97000 * 120.00024 * 180.02562 * 2 1 3
30 30 H 0.97001 * 120.00314 * 5.08472 * 8 6 5
31 31 H 1.09002 * 109.47221 * 299.99518 * 9 8 6
32 32 H 1.09002 * 109.47065 * 60.00227 * 9 8 6
33 33 H 1.08997 * 110.71713 * 324.78883 * 12 10 9
34 34 H 1.08994 * 110.71792 * 88.05903 * 12 10 9
35 35 H 1.08998 * 109.88341 * 262.77486 * 13 12 10
36 36 H 1.09001 * 109.88185 * 141.60544 * 13 12 10
37 37 H 0.97002 * 119.99975 * 179.97438 * 18 17 15
38 38 H 1.08994 * 110.36366 * 217.02763 * 23 14 13
39 39 H 1.09002 * 110.45645 * 94.75779 * 23 14 13
40 40 H 1.08994 * 117.49826 * 145.02296 * 24 5 3
41 41 H 1.08998 * 117.49542 * 0.02562 * 24 5 3
42 42 H 1.08995 * 117.49990 * 0.02562 * 25 5 3
43 43 H 1.08999 * 117.49602 * 214.97995 * 25 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 1.5362 2.2154 -0.0941
5 6 3.6413 1.1698 0.1170
6 6 4.2354 0.0207 0.8901
7 8 4.5352 -1.0052 0.3169
8 7 4.4334 0.1330 2.2184
9 6 5.1122 -0.9387 2.9511
10 6 5.2080 -0.5634 4.4313
11 1 5.7308 0.3845 4.5588
12 6 5.8924 -1.6912 5.2479
13 6 5.3103 -1.4949 6.6636
14 7 4.0453 -0.7600 6.5174
15 6 3.2273 -0.3673 7.5429
16 1 2.3154 0.1708 7.3306
17 6 3.5700 -0.6614 8.8556
18 7 4.6809 -1.3180 9.1144
19 14 2.4538 -0.1264 10.2546
20 1 1.4637 -1.1970 10.5350
21 1 3.2691 0.1246 11.4701
22 1 1.7412 1.1187 9.8708
23 6 3.8039 -0.5150 5.0838
24 6 4.3395 2.5273 0.2211
25 6 4.4413 1.7116 -1.0694
26 1 -0.3634 0.5138 -0.8899
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8901
29 1 1.9500 -0.8400 -0.0004
30 1 4.1266 0.9236 2.6895
31 1 4.5470 -1.8648 2.8467
32 1 6.1148 -1.0772 2.5462
33 1 5.6235 -2.6709 4.8528
34 1 6.9744 -1.5605 5.2543
35 1 6.0056 -0.9184 7.2737
36 1 5.1243 -2.4645 7.1257
37 1 4.9206 -1.5232 10.0317
38 1 3.3511 0.4656 4.9376
39 1 3.1647 -1.2932 4.6667
40 1 5.2284 2.5892 0.8488
41 1 3.7120 3.4184 0.2055
42 1 3.8809 2.0665 -1.9342
43 1 5.3972 1.2370 -1.2906
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001691162502.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:57:19
Heat of formation + Delta-G solvation = -48.766254 kcal
Electronic energy + Delta-G solvation = -24070.183365 eV
Core-core repulsion = 20536.749441 eV
Total energy + Delta-G solvation = -3533.433925 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-41.82972 -40.25169 -39.24044 -37.19778 -36.09020 -35.65635 -34.29102 -31.65375
-29.99071 -28.76439 -27.41741 -25.94424 -24.57780 -23.47121 -22.70571 -21.89816
-21.40204 -20.71302 -19.37986 -18.74027 -17.52841 -17.32078 -16.93575 -16.69461
-16.49228 -16.18766 -15.84094 -15.59129 -15.47561 -14.91850 -14.54070 -14.13145
-13.96897 -13.95578 -13.81937 -13.41287 -13.18349 -13.03951 -12.76536 -12.64749
-12.60630 -12.28130 -12.02947 -11.97938 -11.86328 -11.63609 -11.51983 -11.45518
-11.23758 -10.82716 -10.70753 -10.26659 -10.14449 -8.89835 -7.85637 -5.20896
1.19924 1.39657 1.45690 1.47034 1.55755 1.94153 2.09773 2.49067
2.72085 3.32750 3.49960 3.56041 3.59763 3.66121 3.79256 3.86538
4.02388 4.04003 4.35383 4.44533 4.55326 4.58533 4.63778 4.64451
4.71489 4.79701 4.85496 4.87688 4.91532 5.05909 5.09261 5.11184
5.27614 5.30245 5.44094 5.45501 5.68940 5.78778 6.20239 6.28856
6.40453 6.97203 7.06812 7.10635 7.78276 8.42024 9.24662
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.018222 B = 0.003529 C = 0.003211
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1536.240074 B = 7931.647075 C = 8717.608938
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.083 3.917
2 N -0.726 5.726
3 C 0.557 3.443
4 O -0.564 6.564
5 C -0.216 4.216
6 C 0.557 3.443
7 O -0.560 6.560
8 N -0.708 5.708
9 C 0.143 3.857
10 C -0.096 4.096
11 H 0.090 0.910
12 C -0.121 4.121
13 C 0.182 3.818
14 N -0.629 5.629
15 C -0.244 4.244
16 H 0.081 0.919
17 C -0.065 4.065
18 N -0.950 5.950
19 Si 0.976 3.024
20 H -0.287 1.287
21 H -0.294 1.294
22 H -0.269 1.269
23 C 0.138 3.862
24 C -0.121 4.121
25 C -0.108 4.108
26 H 0.061 0.939
27 H 0.105 0.895
28 H 0.053 0.947
29 H 0.411 0.589
30 H 0.411 0.589
31 H 0.064 0.936
32 H 0.084 0.916
33 H 0.072 0.928
34 H 0.087 0.913
35 H 0.012 0.988
36 H 0.003 0.997
37 H 0.246 0.754
38 H 0.043 0.957
39 H 0.018 0.982
40 H 0.127 0.873
41 H 0.115 0.885
42 H 0.115 0.885
43 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.253 4.032 -20.745 21.135
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.376 5.376
3 C 0.343 3.657
4 O -0.443 6.443
5 C -0.222 4.222
6 C 0.342 3.658
7 O -0.438 6.438
8 N -0.359 5.359
9 C 0.020 3.980
10 C -0.116 4.116
11 H 0.108 0.892
12 C -0.160 4.160
13 C 0.057 3.943
14 N -0.355 5.355
15 C -0.373 4.373
16 H 0.099 0.901
17 C -0.258 4.258
18 N -0.599 5.599
19 Si 0.805 3.195
20 H -0.214 1.214
21 H -0.220 1.220
22 H -0.193 1.193
23 C 0.013 3.987
24 C -0.158 4.158
25 C -0.145 4.145
26 H 0.080 0.920
27 H 0.123 0.877
28 H 0.072 0.928
29 H 0.246 0.754
30 H 0.247 0.753
31 H 0.083 0.917
32 H 0.102 0.898
33 H 0.091 0.909
34 H 0.106 0.894
35 H 0.031 0.969
36 H 0.022 0.978
37 H 0.056 0.944
38 H 0.061 0.939
39 H 0.036 0.964
40 H 0.145 0.855
41 H 0.133 0.867
42 H 0.134 0.866
43 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -0.507 4.013 -20.962 21.349
hybrid contribution -0.646 -0.140 1.587 1.719
sum -1.153 3.873 -19.375 19.792
Atomic orbital electron populations
1.21744 0.77965 1.04327 1.02031 1.45848 1.08909 1.08591 1.74272
1.19234 0.87421 0.83735 0.75314 1.90698 1.69847 1.32441 1.51356
1.21449 0.92311 0.98968 1.09482 1.19269 0.77606 0.86846 0.82045
1.90713 1.52591 1.30681 1.69858 1.46001 1.58995 1.23358 1.07515
1.21268 0.97815 0.89782 0.89143 1.22433 0.96543 0.99979 0.92634
0.89155 1.22716 1.00429 0.98193 0.94633 1.20935 0.86517 0.93906
0.92942 1.44797 1.23340 1.65876 1.01508 1.19453 1.01993 1.29775
0.86084 0.90127 1.25627 0.99272 1.01256 0.99648 1.70185 1.25459
1.46000 1.18303 0.85111 0.77678 0.78084 0.78670 1.21445 1.22015
1.19332 1.21738 0.95369 0.97847 0.83786 1.23269 1.01408 0.91040
1.00091 1.23142 1.00460 0.99365 0.91567 0.91990 0.87671 0.92777
0.75422 0.75319 0.91743 0.89807 0.90893 0.89403 0.96947 0.97844
0.94434 0.93918 0.96411 0.85456 0.86685 0.86637 0.86080
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.36 10.71 127.77 1.37 2.73 16
2 N -0.73 -14.71 5.58 -484.52 -2.70 -17.41 16
3 C 0.56 13.14 7.41 87.66 0.65 13.79 16
4 O -0.56 -16.45 16.28 -3.04 -0.05 -16.50 16
5 C -0.22 -4.23 2.38 -53.67 -0.13 -4.36 16
6 C 0.56 12.46 6.09 87.66 0.53 12.99 16
7 O -0.56 -15.48 16.87 -3.03 -0.05 -15.53 16
8 N -0.71 -15.08 5.40 -463.06 -2.50 -17.58 16
9 C 0.14 3.38 5.13 86.38 0.44 3.82 16
10 C -0.10 -2.80 3.10 -9.40 -0.03 -2.83 16
11 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16
12 C -0.12 -4.02 6.42 31.78 0.20 -3.82 16
13 C 0.18 8.76 5.37 86.73 0.47 9.23 16
14 N -0.63 -31.62 3.39 -691.97 -2.35 -33.97 16
15 C -0.24 -13.60 10.28 84.04 0.86 -12.73 16
16 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16
17 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16
18 N -0.95 -57.03 10.31 21.65 0.22 -56.81 16
19 Si 0.98 45.62 29.55 68.60 2.03 47.65 16
20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16
21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16
22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
23 C 0.14 5.21 6.41 86.85 0.56 5.76 16
24 C -0.12 -1.82 9.74 30.60 0.30 -1.52 16
25 C -0.11 -1.61 9.94 30.60 0.30 -1.31 16
26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16
28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
29 H 0.41 7.85 7.88 -92.71 -0.73 7.12 16
30 H 0.41 8.06 8.34 -92.71 -0.77 7.29 16
31 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16
32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
33 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16
34 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16
35 H 0.01 0.67 7.38 -2.39 -0.02 0.65 16
36 H 0.00 0.18 7.51 -2.39 -0.02 0.16 16
37 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16
38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
39 H 0.02 0.69 8.00 -2.39 -0.02 0.67 16
40 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16
41 H 0.11 1.87 7.68 -2.39 -0.02 1.85 16
42 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16
43 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16
Total: -1.00 -72.94 357.64 0.11 -72.83
By element:
Atomic # 1 Polarization: 19.26 SS G_CDS: -0.48 Total: 18.78 kcal
Atomic # 6 Polarization: 12.53 SS G_CDS: 6.00 Total: 18.52 kcal
Atomic # 7 Polarization: -118.43 SS G_CDS: -7.33 Total: -125.76 kcal
Atomic # 8 Polarization: -31.93 SS G_CDS: -0.10 Total: -32.03 kcal
Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal
Total: -72.94 0.11 -72.83 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691162502.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.067 kcal
(2) G-P(sol) polarization free energy of solvation -72.945 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.878 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.766 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.42 seconds