Wall clock time and date at job start Tue Mar 31 2020 04:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47065 * 2 1 4 4 N 1.46501 * 109.47191 * 180.02562 * 3 2 1 5 5 C 1.34811 * 126.59870 * 125.23933 * 4 3 2 6 6 C 1.36597 * 106.83592 * 180.12708 * 5 4 3 7 7 C 1.47531 * 125.76403 * 179.89546 * 6 5 4 8 8 O 1.21586 * 120.00074 * 359.72276 * 7 6 5 9 9 N 1.34783 * 119.99638 * 179.71695 * 7 6 5 10 10 C 1.46494 * 119.99889 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.47201 * 325.00090 * 10 9 7 12 12 C 1.53002 * 109.47420 * 84.99859 * 10 9 7 13 13 C 1.52999 * 109.47007 * 205.00630 * 10 9 7 14 14 N 1.46495 * 109.47416 * 54.99737 * 13 10 9 15 15 C 1.46499 * 119.99918 * 270.00162 * 14 13 10 16 16 C 1.36943 * 119.99826 * 90.00357 * 14 13 10 17 17 H 1.07993 * 120.00286 * 23.62257 * 16 14 13 18 18 C 1.38811 * 119.99699 * 203.62382 * 16 14 13 19 19 N 1.31617 * 120.00086 * 11.30173 * 18 16 14 20 20 Si 1.86800 * 119.99909 * 191.30799 * 18 16 14 21 21 H 1.48499 * 109.47086 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47489 * 120.00042 * 20 18 16 23 23 H 1.48505 * 109.46772 * 239.99833 * 20 18 16 24 24 N 1.34400 * 108.46238 * 359.64011 * 6 5 4 25 25 N 1.28754 * 109.52199 * 0.22035 * 24 6 5 26 26 H 1.09002 * 109.46787 * 60.00724 * 1 2 3 27 27 H 1.08996 * 109.46733 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47130 * 300.00292 * 1 2 3 29 29 H 1.08994 * 109.47659 * 239.99579 * 2 1 3 30 30 H 1.09002 * 109.46787 * 119.99276 * 2 1 3 31 31 H 1.08994 * 109.47225 * 59.99314 * 3 2 1 32 32 H 1.09002 * 109.46727 * 299.99313 * 3 2 1 33 33 H 1.07997 * 126.57840 * 359.97438 * 5 4 3 34 34 H 0.96997 * 119.99548 * 0.02562 * 9 7 6 35 35 H 1.08992 * 109.47070 * 179.97438 * 12 10 9 36 36 H 1.08999 * 109.47269 * 300.00276 * 12 10 9 37 37 H 1.09001 * 109.46267 * 59.99972 * 12 10 9 38 38 H 1.09001 * 109.47214 * 175.00234 * 13 10 9 39 39 H 1.09003 * 109.46864 * 294.99114 * 13 10 9 40 40 H 1.08996 * 109.47252 * 94.54871 * 15 14 13 41 41 H 1.09009 * 109.46691 * 214.54756 * 15 14 13 42 42 H 1.08998 * 109.47148 * 334.54662 * 15 14 13 43 43 H 0.97004 * 120.00069 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3084 2.0672 -0.8848 6 6 5.5941 1.7983 -0.5099 7 6 6.8100 2.2776 -1.1942 8 8 6.7148 2.9728 -2.1872 9 7 8.0264 1.9449 -0.7186 10 6 9.2339 2.4213 -1.3977 11 1 9.0568 2.4547 -2.4728 12 6 9.5825 3.8235 -0.8946 13 6 10.3947 1.4697 -1.1014 14 7 10.0147 0.1049 -1.4742 15 6 9.3689 -0.7698 -0.4923 16 6 10.2633 -0.3534 -2.7405 17 1 11.0436 0.0984 -3.3348 18 6 9.5121 -1.3986 -3.2602 19 7 8.4253 -1.8015 -2.6367 20 14 10.0438 -2.2334 -4.8445 21 1 11.2893 -1.5981 -5.3448 22 1 10.2921 -3.6744 -4.5856 23 1 8.9723 -2.0908 -5.8628 24 7 5.5641 1.0280 0.5911 25 7 4.3413 0.7972 0.9215 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9955 2.6635 -1.7292 34 1 8.1023 1.3901 0.0734 35 1 10.4811 4.1777 -1.3996 36 1 8.7555 4.5014 -1.1057 37 1 9.7595 3.7900 0.1805 38 1 11.2693 1.7733 -1.6767 39 1 10.6299 1.5037 -0.0376 40 1 8.2868 -0.7079 -0.6068 41 1 9.6932 -1.7980 -0.6529 42 1 9.6464 -0.4542 0.5134 43 1 7.9001 -2.5317 -3.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699472316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:48 Heat of formation + Delta-G solvation = 74.924348 kcal Electronic energy + Delta-G solvation = -24306.390562 eV Core-core repulsion = 20810.613016 eV Total energy + Delta-G solvation = -3495.777546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.97882 -38.89895 -36.26380 -36.05110 -33.92812 -32.71117 -31.35307 -30.65198 -29.76525 -27.14064 -26.05766 -25.52365 -23.63897 -22.85919 -21.61860 -21.42697 -20.20996 -19.67170 -17.83922 -16.70108 -16.21904 -15.95223 -15.49442 -15.23339 -14.76445 -14.56882 -14.21503 -13.86314 -13.62892 -13.41023 -13.11222 -12.97486 -12.71687 -12.38086 -12.08117 -12.03588 -11.86956 -11.75653 -11.35483 -11.27502 -11.02136 -10.94499 -10.79048 -10.69864 -10.45247 -10.22032 -10.09150 -9.87164 -9.78339 -9.48705 -9.05022 -8.51414 -8.25307 -6.64850 -5.63634 -3.10508 1.31677 2.09099 2.11107 3.42884 3.49870 3.51768 3.72068 3.93054 4.17709 4.41268 4.47511 4.57301 4.72143 4.90413 4.95767 5.05627 5.21154 5.24934 5.43397 5.45471 5.58291 5.63367 5.70336 5.76886 5.86242 5.92597 6.06277 6.11020 6.20376 6.33754 6.46535 6.55687 6.62742 6.79943 6.96647 7.26047 7.45174 7.83519 7.89867 8.05822 8.32602 8.47834 8.85949 9.31533 9.94442 10.43232 11.40721 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.004517 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.908165 B = 6197.956884 C = 7406.974157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.124 3.876 4 N -0.366 5.366 5 C 0.084 3.916 6 C -0.085 4.085 7 C 0.605 3.395 8 O -0.554 6.554 9 N -0.680 5.680 10 C 0.116 3.884 11 H 0.087 0.913 12 C -0.159 4.159 13 C 0.142 3.858 14 N -0.598 5.598 15 C 0.161 3.839 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.005 3.995 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.292 1.292 24 N -0.197 5.197 25 N -0.070 5.070 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.201 0.799 34 H 0.403 0.597 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.035 0.965 41 H 0.041 0.959 42 H -0.005 1.005 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 8.382 7.088 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.003 3.997 4 N -0.152 5.152 5 C -0.072 4.072 6 C -0.225 4.225 7 C 0.389 3.611 8 O -0.432 6.432 9 N -0.328 5.328 10 C 0.009 3.991 11 H 0.105 0.895 12 C -0.218 4.218 13 C 0.014 3.986 14 N -0.320 5.320 15 C 0.016 3.984 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.193 4.193 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.219 1.219 24 N -0.071 5.071 25 N -0.050 5.050 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.218 0.782 34 H 0.239 0.761 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.014 0.986 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.162 7.826 7.600 17.095 hybrid contribution -0.172 -0.266 -1.538 1.570 sum -13.334 7.560 6.062 16.483 Atomic orbital electron populations 1.21698 0.94055 1.02770 1.02127 1.21842 0.96707 0.94752 1.04507 1.22066 0.73006 0.99928 1.04723 1.50495 1.08536 1.35498 1.20655 1.23308 0.90339 0.97612 0.95935 1.21636 0.94824 1.07123 0.98890 1.16656 0.81955 0.79669 0.82827 1.90736 1.86746 1.40064 1.25666 1.45591 1.04673 1.51573 1.30967 1.21934 0.86049 0.92797 0.98325 0.89496 1.22158 1.01282 0.97635 1.00741 1.21205 0.94152 0.85466 0.97796 1.43910 1.70652 1.07139 1.10265 1.20859 0.97114 0.93878 0.86502 1.19213 1.12483 1.15292 0.91452 0.91415 1.25027 0.95639 1.00803 0.97879 1.70080 1.15181 1.29513 1.39885 0.86230 0.77833 0.79244 0.83503 1.20337 1.21773 1.21887 1.74643 1.12533 1.09325 1.10612 1.81916 0.93525 1.17570 1.12011 0.92312 0.91707 0.92231 0.90838 0.89982 0.88655 0.87986 0.78247 0.76123 0.92022 0.92953 0.93126 0.92220 0.93939 0.94649 0.94031 0.98611 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.14 -1.12 6.14 -26.73 -0.16 -1.28 16 3 C 0.12 0.96 6.54 -4.04 -0.03 0.93 16 4 N -0.37 -4.69 3.69 -61.06 -0.23 -4.91 16 5 C 0.08 1.20 11.27 -16.84 -0.19 1.01 16 6 C -0.09 -1.55 6.99 -83.55 -0.58 -2.14 16 7 C 0.61 12.49 7.78 -12.47 -0.10 12.39 16 8 O -0.55 -12.45 16.52 5.29 0.09 -12.37 16 9 N -0.68 -13.67 4.41 -54.85 -0.24 -13.91 16 10 C 0.12 2.28 2.88 -67.93 -0.20 2.08 16 11 H 0.09 2.01 7.58 -51.93 -0.39 1.61 16 12 C -0.16 -2.49 9.48 37.16 0.35 -2.14 16 13 C 0.14 2.87 5.33 -4.05 -0.02 2.85 16 14 N -0.60 -14.95 2.78 -181.12 -0.50 -15.45 16 15 C 0.16 4.00 7.61 59.85 0.46 4.45 16 16 C -0.25 -7.08 9.66 -15.06 -0.15 -7.22 16 17 H 0.07 1.85 7.85 -52.49 -0.41 1.43 16 18 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 19 N -0.90 -26.88 10.66 55.49 0.59 -26.29 16 20 Si 0.90 22.48 29.57 -169.99 -5.03 17.45 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 N -0.20 -3.66 12.04 32.85 0.40 -3.27 16 25 N -0.07 -1.14 13.65 60.35 0.82 -0.32 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.20 2.20 8.06 -52.49 -0.42 1.77 16 34 H 0.40 8.00 6.86 -40.82 -0.28 7.72 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.16 8.03 -51.93 -0.42 0.74 16 39 H 0.04 0.77 7.86 -51.93 -0.41 0.36 16 40 H 0.04 0.95 6.90 -51.93 -0.36 0.60 16 41 H 0.04 1.12 7.30 -51.92 -0.38 0.74 16 42 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -34.36 361.31 -5.83 -40.19 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.84 Total: 2.89 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.34 Total: 10.55 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.84 Total: -64.16 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.36 -5.83 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699472316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.111 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds