Wall clock time and date at job start Tue Mar 31 2020 03:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47063 * 136.06196 * 359.63468 * 4 2 1 6 6 C 1.53231 * 88.08605 * 207.20272 * 5 4 2 7 7 C 1.50701 * 114.50631 * 220.45718 * 6 5 4 8 8 O 1.21287 * 120.00262 * 93.84056 * 7 6 5 9 9 N 1.34778 * 120.00192 * 273.84104 * 7 6 5 10 10 C 1.46491 * 120.00453 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.47001 * 35.00444 * 10 9 7 12 12 C 1.52999 * 109.47299 * 154.99943 * 10 9 7 13 13 N 1.46496 * 109.47468 * 305.00413 * 12 10 9 14 14 C 1.36940 * 120.00440 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99404 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00131 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00031 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99972 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46723 * 90.00372 * 18 16 14 20 20 H 1.48500 * 109.47253 * 210.00381 * 18 16 14 21 21 H 1.48499 * 109.47256 * 330.00710 * 18 16 14 22 22 C 1.52995 * 109.47431 * 275.00443 * 10 9 7 23 23 C 1.53006 * 117.50324 * 128.74694 * 22 10 9 24 24 C 1.53004 * 117.50074 * 60.08505 * 22 10 9 25 25 C 1.47066 * 136.05495 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 28 28 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 29 29 H 1.09009 * 113.46583 * 321.93399 * 5 4 2 30 30 H 1.08996 * 113.46984 * 92.36897 * 5 4 2 31 31 H 1.08996 * 114.02615 * 87.71134 * 6 5 4 32 32 H 0.97003 * 119.99569 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.47223 * 65.00538 * 12 10 9 34 34 H 1.09001 * 109.47615 * 185.00164 * 12 10 9 35 35 H 0.97008 * 119.99924 * 0.02562 * 13 12 10 36 36 H 0.96994 * 120.00040 * 179.97438 * 17 16 14 37 37 H 1.08998 * 115.55059 * 274.41312 * 22 10 9 38 38 H 1.09000 * 117.49412 * 359.97438 * 23 22 10 39 39 H 1.08994 * 117.50208 * 145.01538 * 23 22 10 40 40 H 1.08996 * 117.49489 * 214.97996 * 24 22 10 41 41 H 1.08992 * 117.49345 * 359.97438 * 24 22 10 42 42 H 1.08998 * 113.47403 * 267.62937 * 25 4 2 43 43 H 1.09005 * 113.47118 * 38.01191 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8266 -2.5945 0.0077 6 6 3.1647 -2.8705 0.7014 7 6 3.8800 -4.1034 0.2121 8 8 4.7140 -4.0132 -0.6639 9 7 3.5928 -5.3063 0.7478 10 6 4.2876 -6.5049 0.2718 11 1 5.3165 -6.2511 0.0163 12 6 4.2830 -7.5680 1.3721 13 7 4.8590 -7.0062 2.5964 14 6 4.9591 -7.7783 3.7229 15 1 4.6129 -8.8012 3.7090 16 6 5.5054 -7.2461 4.8828 17 7 5.9269 -5.9993 4.8998 18 14 5.6412 -8.2991 6.4197 19 1 6.9487 -9.0033 6.4232 20 1 5.5416 -7.4341 7.6227 21 1 4.5415 -9.2968 6.4350 22 6 3.5741 -7.0500 -0.9670 23 6 4.4258 -7.3305 -2.2067 24 6 3.4747 -6.1313 -2.1865 25 6 3.5941 -1.5740 0.0002 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 -0.5139 -0.8900 29 1 0.9614 -2.8239 0.6298 30 1 1.7566 -3.0294 -0.9893 31 1 3.1242 -2.7988 1.7882 32 1 2.9255 -5.3785 1.4481 33 1 3.2585 -7.8863 1.5655 34 1 4.8753 -8.4251 1.0519 35 1 5.1690 -6.0871 2.6092 36 1 6.3083 -5.6274 5.7104 37 1 2.7358 -7.7183 -0.7707 38 1 5.4945 -7.1264 -2.1399 39 1 4.1476 -8.1832 -2.8261 40 1 2.5711 -6.1955 -2.7926 41 1 3.9172 -5.1385 -2.1060 42 1 3.9996 -1.7345 -0.9987 43 1 4.2295 -0.9366 0.6153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699582557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:43 Heat of formation + Delta-G solvation = 4.738951 kcal Electronic energy + Delta-G solvation = -24019.226674 eV Core-core repulsion = 20488.112909 eV Total energy + Delta-G solvation = -3531.113765 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00373 -39.46002 -37.98894 -36.81983 -35.07080 -33.46351 -31.49897 -31.06258 -29.11719 -27.87410 -26.17107 -24.33624 -23.52262 -22.17738 -21.55416 -20.33001 -20.04859 -19.15779 -17.70635 -17.12297 -17.05805 -16.35470 -15.85156 -15.45418 -15.17680 -15.00010 -14.61391 -14.24623 -13.73833 -13.41321 -13.23173 -13.12261 -12.95372 -12.79404 -12.65766 -12.52472 -12.17382 -12.10322 -11.73603 -11.29377 -11.11794 -10.96869 -10.91587 -10.85992 -10.24132 -10.21967 -10.12386 -9.99402 -9.75405 -9.59295 -8.98065 -8.92055 -8.72319 -7.02458 -5.83884 -3.13985 2.41731 2.56234 2.66121 3.32555 3.39131 3.44410 3.45956 4.05682 4.06884 4.25618 4.50558 4.66673 4.81530 4.86670 4.95161 5.04076 5.08962 5.10989 5.15026 5.22019 5.24638 5.40684 5.42305 5.49671 5.54816 5.66540 5.72032 5.79355 5.84393 5.91305 6.02240 6.16527 6.30682 6.41866 6.44496 6.61145 6.85704 7.48314 7.62913 7.75377 7.93544 8.33856 8.40478 9.45996 10.00844 10.36148 11.38351 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.004053 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.180515 B = 6906.276918 C = 8552.919412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.540 3.460 3 O -0.546 6.546 4 N -0.650 5.650 5 C 0.120 3.880 6 C -0.154 4.154 7 C 0.532 3.468 8 O -0.541 6.541 9 N -0.700 5.700 10 C 0.167 3.833 11 H 0.089 0.911 12 C 0.148 3.852 13 N -0.732 5.732 14 C -0.244 4.244 15 H 0.071 0.929 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.162 4.162 23 C -0.171 4.171 24 C -0.186 4.186 25 C 0.125 3.875 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.406 0.594 33 H 0.025 0.975 34 H 0.035 0.965 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 4.099 -12.622 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.331 3.669 3 O -0.424 6.424 4 N -0.386 5.386 5 C -0.004 4.004 6 C -0.176 4.176 7 C 0.317 3.683 8 O -0.419 6.419 9 N -0.350 5.350 10 C 0.063 3.937 11 H 0.107 0.893 12 C 0.020 3.980 13 N -0.377 5.377 14 C -0.375 4.375 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.182 4.182 23 C -0.209 4.209 24 C -0.223 4.223 25 C 0.003 3.997 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.149 0.851 32 H 0.241 0.759 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.134 0.866 42 H 0.118 0.882 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.497 4.811 -13.110 18.088 hybrid contribution -0.129 -0.539 1.311 1.423 sum -11.625 4.272 -11.799 17.106 Atomic orbital electron populations 1.21862 0.91065 1.05396 1.04313 1.20379 0.90112 0.81208 0.75192 1.90740 1.70898 1.30273 1.50445 1.49613 1.09876 1.05419 1.73709 1.22829 0.96945 0.79559 1.01044 1.23101 0.97307 0.94101 1.03056 1.19878 0.82486 0.84076 0.81848 1.90631 1.33794 1.86156 1.31333 1.45948 1.42558 1.06302 1.40151 1.20830 0.95966 0.84623 0.92303 0.89343 1.20914 0.97089 0.93689 0.86298 1.42343 1.74168 1.14058 1.07096 1.19204 1.34304 0.95049 0.88960 0.91128 1.24743 1.01408 0.96377 0.98141 1.69658 1.46953 1.13237 1.28031 0.86196 0.77819 0.79197 0.82972 1.21683 1.21768 1.20745 1.22649 1.02352 1.03502 0.89683 1.22899 0.97872 0.99695 1.00413 1.23259 1.01184 0.97394 1.00428 1.22833 0.83787 0.91327 1.01770 0.88868 0.89295 0.89478 0.89330 0.89011 0.85098 0.75944 0.95728 0.94710 0.78018 0.93434 0.87867 0.88722 0.89216 0.89925 0.86553 0.88165 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.15 36.01 0.37 -0.84 16 2 C 0.54 6.53 8.19 -10.98 -0.09 6.44 16 3 O -0.55 -9.11 17.86 5.56 0.10 -9.01 16 4 N -0.65 -7.13 3.69 -185.41 -0.68 -7.82 16 5 C 0.12 0.99 7.98 -8.66 -0.07 0.92 16 6 C -0.15 -1.66 4.47 -91.38 -0.41 -2.07 16 7 C 0.53 7.23 6.74 -10.98 -0.07 7.15 16 8 O -0.54 -8.85 12.98 5.55 0.07 -8.78 16 9 N -0.70 -9.60 4.50 -53.81 -0.24 -9.84 16 10 C 0.17 2.55 2.43 -67.94 -0.17 2.39 16 11 H 0.09 1.58 7.34 -51.92 -0.38 1.20 16 12 C 0.15 2.69 5.80 -4.04 -0.02 2.67 16 13 N -0.73 -17.18 5.43 -59.91 -0.33 -17.50 16 14 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 18 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.16 -2.05 5.36 -90.62 -0.49 -2.54 16 23 C -0.17 -2.07 10.18 -26.69 -0.27 -2.34 16 24 C -0.19 -2.25 9.74 -26.69 -0.26 -2.50 16 25 C 0.13 1.50 7.97 -8.51 -0.07 1.43 16 26 H 0.09 0.66 8.12 -51.93 -0.42 0.23 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.53 8.14 -51.92 -0.42 0.10 16 30 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.41 5.21 8.60 -40.82 -0.35 4.86 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.39 9.66 7.33 -40.82 -0.30 9.36 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 38 H 0.09 1.22 8.05 -51.93 -0.42 0.81 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.12 1.63 5.02 -51.93 -0.26 1.37 16 42 H 0.10 1.24 7.46 -51.93 -0.39 0.85 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -33.33 360.44 -8.46 -41.78 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -6.71 Total: 11.82 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.80 Total: 3.70 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.53 Total: -61.59 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.33 -8.46 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699582557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.523 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds