Wall clock time and date at job start Tue Mar 31 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47063 * 136.06196 * 359.63468 * 4 2 1 6 6 C 1.53231 * 88.08605 * 207.20272 * 5 4 2 7 7 C 1.50701 * 114.50631 * 220.45718 * 6 5 4 8 8 O 1.21287 * 120.00262 * 93.84056 * 7 6 5 9 9 N 1.34778 * 120.00192 * 273.84104 * 7 6 5 10 10 C 1.46491 * 120.00453 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.47001 * 35.00444 * 10 9 7 12 12 C 1.52999 * 109.47299 * 154.99943 * 10 9 7 13 13 N 1.46496 * 109.47468 * 305.00413 * 12 10 9 14 14 C 1.36940 * 120.00440 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99404 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00131 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00031 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99972 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46723 * 90.00372 * 18 16 14 20 20 H 1.48500 * 109.47253 * 210.00381 * 18 16 14 21 21 H 1.48499 * 109.47256 * 330.00710 * 18 16 14 22 22 C 1.52995 * 109.47431 * 275.00443 * 10 9 7 23 23 C 1.53006 * 117.50324 * 128.74694 * 22 10 9 24 24 C 1.53004 * 117.50074 * 60.08505 * 22 10 9 25 25 C 1.47066 * 136.05495 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 28 28 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 29 29 H 1.09009 * 113.46583 * 321.93399 * 5 4 2 30 30 H 1.08996 * 113.46984 * 92.36897 * 5 4 2 31 31 H 1.08996 * 114.02615 * 87.71134 * 6 5 4 32 32 H 0.97003 * 119.99569 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.47223 * 65.00538 * 12 10 9 34 34 H 1.09001 * 109.47615 * 185.00164 * 12 10 9 35 35 H 0.97008 * 119.99924 * 0.02562 * 13 12 10 36 36 H 0.96994 * 120.00040 * 179.97438 * 17 16 14 37 37 H 1.08998 * 115.55059 * 274.41312 * 22 10 9 38 38 H 1.09000 * 117.49412 * 359.97438 * 23 22 10 39 39 H 1.08994 * 117.50208 * 145.01538 * 23 22 10 40 40 H 1.08996 * 117.49489 * 214.97996 * 24 22 10 41 41 H 1.08992 * 117.49345 * 359.97438 * 24 22 10 42 42 H 1.08998 * 113.47403 * 267.62937 * 25 4 2 43 43 H 1.09005 * 113.47118 * 38.01191 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8266 -2.5945 0.0077 6 6 3.1647 -2.8705 0.7014 7 6 3.8800 -4.1034 0.2121 8 8 4.7140 -4.0132 -0.6639 9 7 3.5928 -5.3063 0.7478 10 6 4.2876 -6.5049 0.2718 11 1 5.3165 -6.2511 0.0163 12 6 4.2830 -7.5680 1.3721 13 7 4.8590 -7.0062 2.5964 14 6 4.9591 -7.7783 3.7229 15 1 4.6129 -8.8012 3.7090 16 6 5.5054 -7.2461 4.8828 17 7 5.9269 -5.9993 4.8998 18 14 5.6412 -8.2991 6.4197 19 1 6.9487 -9.0033 6.4232 20 1 5.5416 -7.4341 7.6227 21 1 4.5415 -9.2968 6.4350 22 6 3.5741 -7.0500 -0.9670 23 6 4.4258 -7.3305 -2.2067 24 6 3.4747 -6.1313 -2.1865 25 6 3.5941 -1.5740 0.0002 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 -0.5139 -0.8900 29 1 0.9614 -2.8239 0.6298 30 1 1.7566 -3.0294 -0.9893 31 1 3.1242 -2.7988 1.7882 32 1 2.9255 -5.3785 1.4481 33 1 3.2585 -7.8863 1.5655 34 1 4.8753 -8.4251 1.0519 35 1 5.1690 -6.0871 2.6092 36 1 6.3083 -5.6274 5.7104 37 1 2.7358 -7.7183 -0.7707 38 1 5.4945 -7.1264 -2.1399 39 1 4.1476 -8.1832 -2.8261 40 1 2.5711 -6.1955 -2.7926 41 1 3.9172 -5.1385 -2.1060 42 1 3.9996 -1.7345 -0.9987 43 1 4.2295 -0.9366 0.6153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699582557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:42 Heat of formation + Delta-G solvation = -19.073525 kcal Electronic energy + Delta-G solvation = -24020.259260 eV Core-core repulsion = 20488.112909 eV Total energy + Delta-G solvation = -3532.146351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97434 -40.53671 -39.03063 -37.92610 -36.57958 -34.93848 -33.02349 -32.19108 -30.17890 -29.11966 -26.99156 -26.00653 -24.68929 -23.17404 -23.00258 -21.41617 -21.17760 -20.02153 -19.25133 -18.50859 -17.98109 -17.44319 -16.79881 -16.71197 -16.49030 -16.22789 -15.79972 -15.50917 -15.13922 -14.79875 -14.62866 -14.27281 -13.98953 -13.72223 -13.58283 -13.37681 -13.23573 -13.14347 -12.96412 -12.78588 -12.65427 -12.43471 -12.22913 -12.05527 -11.83141 -11.82460 -11.26529 -11.12689 -11.02740 -10.95907 -10.65393 -9.90554 -9.85521 -8.98750 -7.92809 -5.21728 1.50249 1.51368 1.51937 1.58898 1.59566 1.69306 2.26587 2.57759 3.07194 3.15976 3.42205 3.49445 3.63673 3.81443 3.93797 4.03936 4.14074 4.19481 4.22831 4.30650 4.40601 4.45885 4.49699 4.52412 4.59013 4.64611 4.69467 4.72654 4.87574 4.95533 5.01336 5.09148 5.11035 5.17090 5.34718 5.43738 5.53182 5.63540 6.28169 6.61066 6.67385 7.02599 7.30761 7.36175 8.09794 8.33174 9.30045 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.004053 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.180515 B = 6906.276918 C = 8552.919412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.530 3.470 3 O -0.605 6.605 4 N -0.649 5.649 5 C 0.135 3.865 6 C -0.146 4.146 7 C 0.533 3.467 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.178 3.822 11 H 0.056 0.944 12 C 0.150 3.850 13 N -0.742 5.742 14 C -0.242 4.242 15 H 0.079 0.921 16 C -0.071 4.071 17 N -0.968 5.968 18 Si 0.969 3.031 19 H -0.293 1.293 20 H -0.298 1.298 21 H -0.266 1.266 22 C -0.161 4.161 23 C -0.173 4.173 24 C -0.177 4.177 25 C 0.116 3.884 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.412 0.588 33 H 0.044 0.956 34 H 0.033 0.967 35 H 0.375 0.625 36 H 0.249 0.751 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 2.433 -13.143 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.323 3.677 3 O -0.487 6.487 4 N -0.384 5.384 5 C 0.012 3.988 6 C -0.168 4.168 7 C 0.319 3.681 8 O -0.452 6.452 9 N -0.346 5.346 10 C 0.073 3.927 11 H 0.074 0.926 12 C 0.023 3.977 13 N -0.386 5.386 14 C -0.374 4.374 15 H 0.097 0.903 16 C -0.264 4.264 17 N -0.618 5.618 18 Si 0.799 3.201 19 H -0.220 1.220 20 H -0.225 1.225 21 H -0.191 1.191 22 C -0.180 4.180 23 C -0.210 4.210 24 C -0.214 4.214 25 C -0.008 4.008 26 H 0.111 0.889 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.153 0.847 32 H 0.248 0.752 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.207 0.793 36 H 0.058 0.942 37 H 0.141 0.859 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.345 3.074 -13.654 20.042 hybrid contribution 0.799 -0.066 1.395 1.609 sum -13.547 3.008 -12.260 18.516 Atomic orbital electron populations 1.21888 0.86792 1.06247 1.06567 1.21390 0.92050 0.80402 0.73826 1.90710 1.72393 1.32356 1.53218 1.49715 1.09304 1.06595 1.72835 1.22959 0.96439 0.77302 1.02054 1.23008 0.98831 0.91788 1.03209 1.20268 0.82040 0.84580 0.81220 1.90629 1.35162 1.86570 1.32815 1.45876 1.42413 1.06003 1.40283 1.20538 0.95110 0.84481 0.92576 0.92586 1.21047 0.97290 0.94266 0.85103 1.42515 1.74409 1.13476 1.08172 1.19618 1.32542 0.95467 0.89735 0.90325 1.25491 1.02255 0.97502 1.01115 1.69812 1.48747 1.14945 1.28318 0.85202 0.77832 0.77767 0.79302 1.22043 1.22500 1.19063 1.22544 1.02794 1.04189 0.88507 1.22978 0.97047 1.00642 1.00369 1.23211 1.01866 0.96221 1.00056 1.22805 0.84769 0.91961 1.01272 0.88880 0.86912 0.86954 0.85617 0.87725 0.84678 0.75193 0.93800 0.94962 0.79314 0.94187 0.85887 0.90411 0.86909 0.87488 0.88644 0.88954 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.15 71.24 0.72 -1.09 16 2 C 0.53 12.36 8.19 87.66 0.72 13.08 16 3 O -0.61 -20.74 17.86 -3.03 -0.05 -20.79 16 4 N -0.65 -13.53 3.69 -858.89 -3.17 -16.70 16 5 C 0.13 1.85 7.98 83.08 0.66 2.51 16 6 C -0.15 -3.04 4.47 -11.29 -0.05 -3.09 16 7 C 0.53 14.31 6.74 87.66 0.59 14.90 16 8 O -0.57 -19.12 12.98 -3.05 -0.04 -19.16 16 9 N -0.70 -18.46 4.50 -442.54 -1.99 -20.45 16 10 C 0.18 5.31 2.43 44.99 0.11 5.42 16 11 H 0.06 2.05 7.34 -2.38 -0.02 2.03 16 12 C 0.15 5.26 5.80 86.38 0.50 5.76 16 13 N -0.74 -34.65 5.43 -343.45 -1.87 -36.52 16 14 C -0.24 -12.66 9.99 84.03 0.84 -11.82 16 15 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 16 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 17 N -0.97 -57.25 13.06 21.65 0.28 -56.97 16 18 Si 0.97 44.43 29.55 68.60 2.03 46.45 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 20 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 C -0.16 -3.72 5.36 -10.79 -0.06 -3.78 16 23 C -0.17 -3.87 10.18 30.62 0.31 -3.56 16 24 C -0.18 -3.89 9.74 30.62 0.30 -3.59 16 25 C 0.12 2.82 7.97 83.18 0.66 3.48 16 26 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 27 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 31 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.41 9.91 8.60 -92.71 -0.80 9.12 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.37 19.02 7.33 -92.70 -0.68 18.34 16 36 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.12 2.42 8.11 -2.39 -0.02 2.40 16 38 H 0.08 2.00 8.05 -2.39 -0.02 1.99 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.10 2.60 5.02 -2.39 -0.01 2.58 16 42 H 0.09 2.39 7.46 -2.39 -0.02 2.38 16 43 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -74.33 360.44 0.52 -73.82 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: -0.45 Total: 35.53 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 5.78 Total: 14.78 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -6.74 Total: -130.63 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.09 Total: -39.95 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -74.33 0.52 -73.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699582557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.742 kcal (2) G-P(sol) polarization free energy of solvation -74.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds