Wall clock time and date at job start Tue Mar 31 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46761 * 124.34833 * 2 1 4 4 C 1.54481 * 105.47318 * 163.00707 * 3 2 1 5 5 C 1.54626 * 101.79699 * 25.39728 * 4 3 2 6 6 H 1.08992 * 110.48708 * 93.90062 * 5 4 3 7 7 C 1.50704 * 110.48233 * 216.54581 * 5 4 3 8 8 O 1.21279 * 120.00295 * 85.03079 * 7 5 4 9 9 N 1.34780 * 119.99408 * 265.02704 * 7 5 4 10 10 C 1.47015 * 125.65190 * 5.06884 * 9 7 5 11 11 C 1.54324 * 107.27308 * 181.01860 * 10 9 7 12 12 C 1.55159 * 102.94028 * 22.18906 * 11 10 9 13 13 H 1.09000 * 111.00277 * 82.61619 * 12 11 10 14 14 C 1.53007 * 111.00328 * 206.42232 * 12 11 10 15 15 N 1.46498 * 109.47301 * 293.54546 * 14 12 11 16 16 C 1.36931 * 119.99902 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00188 * 359.97438 * 16 15 14 18 18 C 1.38818 * 120.00048 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99570 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00041 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47215 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46869 * 120.00428 * 20 18 16 23 23 H 1.48505 * 109.47168 * 239.99952 * 20 18 16 24 24 C 1.47430 * 125.64596 * 184.75206 * 9 7 5 25 25 C 1.34418 * 124.34899 * 180.02562 * 2 1 3 26 26 O 1.21283 * 124.94323 * 0.41357 * 25 2 1 27 27 H 1.09003 * 109.47426 * 89.99949 * 1 2 3 28 28 H 1.09003 * 109.47200 * 210.00454 * 1 2 3 29 29 H 1.09004 * 109.47412 * 329.99735 * 1 2 3 30 30 H 1.08999 * 110.24478 * 44.00455 * 3 2 1 31 31 H 1.09000 * 110.24323 * 282.00843 * 3 2 1 32 32 H 1.08998 * 110.97038 * 143.53694 * 4 3 2 33 33 H 1.09000 * 110.96525 * 267.26081 * 4 3 2 34 34 H 1.08999 * 109.87985 * 300.43327 * 10 9 7 35 35 H 1.08996 * 109.88969 * 61.60139 * 10 9 7 36 36 H 1.09003 * 110.72380 * 140.55422 * 11 10 9 37 37 H 1.09002 * 110.72176 * 263.65169 * 11 10 9 38 38 H 1.08992 * 109.46700 * 53.54962 * 14 12 11 39 39 H 1.09003 * 109.46657 * 173.54548 * 14 12 11 40 40 H 0.97008 * 120.00034 * 0.02562 * 15 14 12 41 41 H 0.97010 * 119.99644 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.36764 * 274.75270 * 24 9 7 43 43 H 1.09005 * 110.36751 * 37.07054 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7486 0.4351 5 6 3.6904 -0.7380 0.0099 6 1 4.1201 -0.8533 -0.9851 7 6 4.4412 -1.5782 1.0108 8 8 3.8765 -1.9897 2.0021 9 7 5.7402 -1.8722 0.8041 10 6 6.5716 -1.3558 -0.2928 11 6 7.9737 -1.9821 -0.1391 12 6 7.6954 -3.2540 0.7048 13 1 7.3540 -4.0746 0.0738 14 6 8.9329 -3.6614 1.5072 15 7 9.9918 -4.0875 0.5889 16 6 11.2011 -4.4991 1.0821 17 1 11.3744 -4.5091 2.1481 18 6 12.2047 -4.9024 0.2120 19 7 11.9940 -4.8886 -1.0871 20 14 13.8546 -5.4631 0.8848 21 1 13.8373 -5.3841 2.3676 22 1 14.1093 -6.8649 0.4662 23 1 14.9293 -4.5855 0.3555 24 6 6.5644 -2.7599 1.6444 25 6 2.2234 -1.1098 -0.0005 26 8 1.7946 -2.2442 -0.0082 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.8986 1.9381 0.7105 31 1 2.3302 1.6431 -1.0003 32 1 4.4753 1.3011 -0.0973 33 1 3.8275 0.8451 1.5135 34 1 6.1404 -1.6432 -1.2518 35 1 6.6413 -0.2701 -0.2258 36 1 8.3863 -2.2477 -1.1124 37 1 8.6432 -1.3038 0.3899 38 1 9.2812 -2.8116 2.0942 39 1 8.6781 -4.4843 2.1750 40 1 9.8366 -4.0774 -0.3686 41 1 12.6952 -5.1708 -1.6952 42 1 6.9815 -2.2064 2.4857 43 1 5.9721 -3.6030 2.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752950218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:54 Heat of formation + Delta-G solvation = -75.708393 kcal Electronic energy + Delta-G solvation = -23810.658481 eV Core-core repulsion = 20276.056258 eV Total energy + Delta-G solvation = -3534.602223 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08247 -40.56122 -38.75491 -37.57490 -36.44978 -34.29090 -33.61040 -31.80687 -30.34447 -29.09198 -27.88726 -26.90267 -24.75406 -23.97387 -23.12450 -21.39606 -21.22870 -19.89345 -19.16549 -18.73348 -17.76706 -17.44887 -17.02980 -16.73496 -16.50641 -15.81314 -15.56533 -15.33814 -14.98501 -14.84888 -14.78311 -14.53308 -14.14774 -13.90904 -13.86414 -13.65782 -13.43218 -13.14445 -13.03021 -12.95079 -12.86032 -12.76781 -12.18494 -12.12135 -12.08974 -11.78622 -11.67471 -11.59837 -11.07083 -11.01039 -10.93295 -9.76405 -9.73862 -8.98467 -7.94366 -5.22480 1.23375 1.42705 1.49004 1.49728 1.59584 1.84488 2.15357 2.57045 3.09245 3.29853 3.39700 3.45875 3.64202 3.70977 3.88902 3.94945 4.05064 4.26680 4.31068 4.35044 4.39981 4.44036 4.55372 4.61514 4.62066 4.70174 4.79226 4.82695 4.84075 4.92358 5.00360 5.04838 5.09936 5.22093 5.27339 5.41595 5.51267 5.51812 5.97213 6.28301 6.40197 6.93511 7.05849 7.35546 8.09987 8.34766 9.29239 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.044878 B = 0.002591 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.767596 B =10804.484497 C =10933.813568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.622 5.622 3 C 0.102 3.898 4 C -0.110 4.110 5 C -0.141 4.141 6 H 0.154 0.846 7 C 0.542 3.458 8 O -0.584 6.584 9 N -0.613 5.613 10 C 0.100 3.900 11 C -0.116 4.116 12 C -0.099 4.099 13 H 0.073 0.927 14 C 0.165 3.835 15 N -0.741 5.741 16 C -0.244 4.244 17 H 0.074 0.926 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.268 1.268 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.119 3.881 25 C 0.520 3.480 26 O -0.576 6.576 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.015 0.985 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.079 0.921 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.973 20.184 -1.173 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.355 5.355 3 C -0.019 4.019 4 C -0.148 4.148 5 C -0.165 4.165 6 H 0.172 0.828 7 C 0.331 3.669 8 O -0.464 6.464 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.153 4.153 12 C -0.118 4.118 13 H 0.091 0.909 14 C 0.038 3.962 15 N -0.384 5.384 16 C -0.375 4.375 17 H 0.092 0.908 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.192 1.192 22 H -0.223 1.223 23 H -0.218 1.218 24 C -0.004 4.004 25 C 0.306 3.694 26 O -0.455 6.455 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.570 19.407 -0.496 28.284 hybrid contribution 0.908 -1.163 0.025 1.476 sum -19.662 18.244 -0.470 26.826 Atomic orbital electron populations 1.21733 0.76641 1.03693 1.02941 1.48305 1.07634 1.07418 1.72181 1.22486 0.88622 0.86053 1.04774 1.22757 0.99466 0.89093 1.03479 1.22178 0.93073 0.99140 1.02094 0.82835 1.20032 0.80419 0.80177 0.86314 1.90717 1.68349 1.55492 1.31818 1.48542 1.09293 1.46962 1.29724 1.22377 0.89629 1.00461 0.89625 1.22577 0.95965 0.95651 1.01151 1.22394 0.93941 0.98446 0.97034 0.90877 1.20640 0.87001 0.96447 0.92129 1.42469 1.11374 1.79078 1.05468 1.19645 0.90885 1.34625 0.92394 0.90802 1.25524 1.01999 1.03411 0.95688 1.69807 1.34317 1.55712 1.01965 0.85101 0.79930 0.77001 0.77889 1.19248 1.22268 1.21801 1.22143 0.91092 0.93372 0.93827 1.20657 0.89233 0.84529 0.74951 1.90707 1.79179 1.23592 1.52007 0.91120 0.93187 0.87552 0.87477 0.87263 0.83995 0.90429 0.89497 0.87373 0.90014 0.90121 0.95128 0.96710 0.79094 0.93974 0.90330 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 10.96 127.77 1.40 2.54 16 2 N -0.62 -10.16 3.33 -842.81 -2.81 -12.97 16 3 C 0.10 0.64 7.35 86.83 0.64 1.28 16 4 C -0.11 -0.96 6.69 31.65 0.21 -0.75 16 5 C -0.14 -2.63 2.89 -11.53 -0.03 -2.66 16 6 H 0.15 1.99 7.08 -2.39 -0.02 1.98 16 7 C 0.54 15.24 6.75 87.66 0.59 15.83 16 8 O -0.58 -22.47 16.58 -1.28 -0.02 -22.50 16 9 N -0.61 -15.41 3.32 -811.36 -2.70 -18.11 16 10 C 0.10 1.80 6.25 86.73 0.54 2.34 16 11 C -0.12 -2.88 6.12 31.78 0.19 -2.68 16 12 C -0.10 -3.04 3.12 -9.32 -0.03 -3.07 16 13 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 14 C 0.16 6.38 5.71 86.38 0.49 6.87 16 15 N -0.74 -36.56 5.45 -343.45 -1.87 -38.43 16 16 C -0.24 -13.43 9.99 84.04 0.84 -12.59 16 17 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 20 Si 0.97 45.70 29.55 68.60 2.03 47.72 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 C 0.12 3.43 6.36 86.93 0.55 3.99 16 25 C 0.52 13.45 7.00 87.92 0.62 14.07 16 26 O -0.58 -21.54 17.28 -1.29 -0.02 -21.56 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.90 7.93 -2.39 -0.02 0.88 16 29 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.08 0.92 7.91 -2.39 -0.02 0.90 16 34 H 0.09 1.29 7.67 -2.39 -0.02 1.28 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.03 8.02 -2.39 -0.02 2.01 16 38 H 0.03 1.16 8.11 -2.39 -0.02 1.14 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.38 19.48 7.53 -92.70 -0.70 18.78 16 41 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 42 H 0.08 2.15 8.04 -2.38 -0.02 2.14 16 43 H 0.06 1.92 8.09 -2.38 -0.02 1.90 16 Total: -1.00 -84.44 354.37 1.67 -82.77 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.30 Total: 19.42 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 6.48 Total: 21.44 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -7.10 Total: -127.30 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.04 Total: -44.06 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -84.44 1.67 -82.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752950218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.060 kcal (2) G-P(sol) polarization free energy of solvation -84.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds