Wall clock time and date at job start Tue Mar 31 2020 04:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47002 * 2 1 4 4 C 1.53002 * 109.47175 * 120.00186 * 2 1 3 5 5 H 1.08997 * 109.46850 * 59.99647 * 4 2 1 6 6 C 1.53000 * 109.46655 * 300.00123 * 4 2 1 7 7 N 1.46502 * 109.46851 * 185.00176 * 6 4 2 8 8 C 1.34777 * 120.00044 * 180.02562 * 7 6 4 9 9 O 1.21687 * 119.99976 * 359.97438 * 8 7 6 10 10 C 1.46774 * 120.00097 * 180.02562 * 8 7 6 11 11 C 1.41485 * 126.51680 * 359.67713 * 10 8 7 12 12 N 1.30286 * 108.18969 * 180.26393 * 11 10 8 13 13 N 1.39898 * 109.23308 * 0.02562 * 12 11 10 14 14 C 1.46496 * 125.74718 * 180.02562 * 13 12 11 15 15 C 1.34847 * 108.50466 * 359.97438 * 13 12 11 16 16 N 1.38010 * 126.44568 * 180.02562 * 15 13 12 17 17 N 1.46492 * 109.47329 * 179.97438 * 4 2 1 18 18 C 1.36930 * 120.00216 * 274.99905 * 17 4 2 19 19 H 1.08002 * 120.00259 * 359.97438 * 18 17 4 20 20 C 1.38812 * 120.00075 * 179.97438 * 18 17 4 21 21 N 1.31618 * 120.00178 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00124 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.46844 * 89.99556 * 22 20 18 24 24 H 1.48496 * 109.47352 * 209.99422 * 22 20 18 25 25 H 1.48503 * 109.47128 * 330.00108 * 22 20 18 26 26 H 1.09002 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47109 * 299.99715 * 1 2 3 28 28 H 1.09001 * 109.46924 * 60.00105 * 1 2 3 29 29 H 1.09006 * 109.46885 * 239.99651 * 2 1 3 30 30 H 1.09002 * 109.46999 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47195 * 299.99729 * 3 2 1 32 32 H 1.08997 * 109.47645 * 59.99937 * 3 2 1 33 33 H 1.08996 * 109.47362 * 65.00140 * 6 4 2 34 34 H 1.09000 * 109.47186 * 304.99662 * 6 4 2 35 35 H 0.96994 * 120.00246 * 359.97438 * 7 6 4 36 36 H 1.08003 * 125.90714 * 0.26929 * 11 10 8 37 37 H 1.08999 * 109.47091 * 269.94861 * 14 13 12 38 38 H 1.08998 * 109.47202 * 29.95188 * 14 13 12 39 39 H 1.09001 * 109.46964 * 149.95795 * 14 13 12 40 40 H 0.97009 * 120.00055 * 179.97438 * 16 15 13 41 41 H 0.97001 * 120.00353 * 359.97438 * 16 15 13 42 42 H 0.97000 * 119.99763 * 94.99597 * 17 4 2 43 43 H 0.97000 * 120.00628 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 1.5300 0.0000 2.4984 7 7 2.1142 -0.6176 3.6916 8 6 1.8052 -0.1445 4.9152 9 8 1.0414 0.7960 5.0289 10 6 2.3909 -0.7628 6.1105 11 6 3.2849 -1.8591 6.1392 12 7 3.5730 -2.1166 7.3834 13 7 2.8919 -1.2165 8.2099 14 6 2.9560 -1.1813 9.6731 15 6 2.1673 -0.3861 7.4329 16 7 1.3568 0.6435 7.8662 17 7 3.5050 -0.7219 1.2490 18 6 4.1892 -1.6936 0.5688 19 1 3.6489 -2.4599 0.0328 20 6 5.5773 -1.6938 0.5681 21 7 6.2350 -2.6281 -0.0852 22 14 6.5120 -0.3688 1.4957 23 1 6.7600 -0.8209 2.8883 24 1 7.8093 -0.1129 0.8199 25 1 5.7096 0.8806 1.5164 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.4437 -0.0770 2.5443 34 1 1.8184 1.0502 2.4548 35 1 2.7227 -1.3675 3.6010 36 1 3.6632 -2.3906 5.2784 37 1 2.1757 -1.8202 10.0864 38 1 3.9313 -1.5392 10.0027 39 1 2.8086 -0.1580 10.0186 40 1 0.8755 1.1859 7.2219 41 1 1.2685 0.8249 8.8150 42 1 3.9903 -0.0338 1.7306 43 1 7.2050 -2.6285 -0.0854 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753829567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:23 Heat of formation + Delta-G solvation = 44.722056 kcal Electronic energy + Delta-G solvation = -24362.948199 eV Core-core repulsion = 20865.860982 eV Total energy + Delta-G solvation = -3497.087216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30938 -38.95766 -37.27724 -35.07180 -33.56802 -33.22024 -33.10357 -30.77638 -29.02721 -27.73353 -26.74692 -26.59745 -23.86855 -22.42478 -22.04401 -20.78761 -19.93220 -18.72938 -18.05727 -17.63157 -16.64892 -16.15653 -15.86254 -15.70457 -15.10436 -14.62628 -14.30187 -14.08732 -13.75031 -13.60187 -13.30204 -13.06588 -13.00028 -12.77527 -12.71763 -12.53439 -12.37000 -11.52337 -11.32330 -11.22634 -11.04814 -10.92806 -10.84863 -10.61041 -10.40231 -10.13860 -9.77383 -9.57877 -9.52470 -9.08523 -8.91385 -8.58235 -7.82806 -7.28423 -5.77865 -3.13881 1.84832 2.15600 2.35168 3.38338 3.42759 3.47354 3.55273 3.75673 3.82170 4.35023 4.58791 4.83938 4.92346 5.08765 5.22617 5.22787 5.33412 5.43076 5.45088 5.62503 5.69319 5.75368 5.82241 5.90298 6.06868 6.13295 6.21909 6.30163 6.33592 6.43098 6.57281 6.61496 6.69589 6.89538 6.94874 7.05973 7.21662 7.32605 7.77412 7.98500 8.07881 8.40895 8.71228 9.19381 9.91752 10.11325 11.40183 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.005054 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.171064 B = 5538.643751 C = 7023.564546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.111 3.889 7 N -0.714 5.714 8 C 0.601 3.399 9 O -0.582 6.582 10 C -0.367 4.367 11 C 0.118 3.882 12 N -0.307 5.307 13 N -0.405 5.405 14 C 0.103 3.897 15 C 0.429 3.571 16 N -0.832 5.832 17 N -0.744 5.744 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.010 3.990 21 N -0.932 5.932 22 Si 0.877 3.123 23 H -0.282 1.282 24 H -0.293 1.293 25 H -0.277 1.277 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.407 0.593 36 H 0.193 0.807 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.431 0.569 41 H 0.397 0.603 42 H 0.362 0.638 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 5.730 16.146 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.199 4.199 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.013 4.013 7 N -0.364 5.364 8 C 0.391 3.609 9 O -0.464 6.464 10 C -0.387 4.387 11 C -0.072 4.072 12 N -0.126 5.126 13 N -0.193 5.193 14 C -0.038 4.038 15 C 0.195 3.805 16 N -0.382 5.382 17 N -0.387 5.387 18 C -0.373 4.373 19 H 0.109 0.891 20 C -0.186 4.186 21 N -0.579 5.579 22 Si 0.708 3.292 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.209 0.791 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.268 0.732 41 H 0.225 0.775 42 H 0.196 0.804 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.634 5.380 16.965 20.732 hybrid contribution 0.541 1.386 0.165 1.497 sum -10.093 6.766 17.129 21.001 Atomic orbital electron populations 1.21913 0.96512 1.01166 1.01016 1.21690 0.93822 0.96875 1.00873 1.21784 1.02112 0.95969 1.00043 1.20486 0.84998 0.97378 0.90636 0.91984 1.21802 0.97582 0.97653 0.84249 1.45704 1.49022 1.36718 1.05001 1.16929 0.79813 0.81891 0.82295 1.90623 1.38782 1.30053 1.86977 1.19363 1.18290 1.09980 0.91032 1.23951 0.93664 0.94206 0.95387 1.77165 1.20071 1.13721 1.01609 1.48194 1.38216 1.26415 1.06466 1.21760 1.04735 1.02764 0.74565 1.18044 0.87329 0.85585 0.89580 1.41750 1.51035 1.34369 1.11065 1.42819 1.00387 1.33135 1.62363 1.19046 0.89367 1.04214 1.24697 0.89088 1.24622 0.96148 0.97858 0.99996 1.69690 1.07052 1.34890 1.46289 0.86668 0.79907 0.82555 0.80105 1.20901 1.21911 1.20351 0.93028 0.92920 0.93473 0.90495 0.91944 0.93986 0.93463 0.91412 0.91631 0.75645 0.79054 0.90877 0.88789 0.90309 0.73233 0.77508 0.80443 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.84 37.16 0.33 -1.68 16 2 C -0.11 -1.83 2.91 -90.62 -0.26 -2.10 16 3 C -0.14 -2.30 8.69 37.15 0.32 -1.98 16 4 C 0.17 3.12 2.27 -67.93 -0.15 2.97 16 5 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 6 C 0.11 1.82 4.51 -4.04 -0.02 1.81 16 7 N -0.71 -11.76 5.38 -61.59 -0.33 -12.09 16 8 C 0.60 10.11 7.79 -12.81 -0.10 10.01 16 9 O -0.58 -10.57 15.14 5.20 0.08 -10.49 16 10 C -0.37 -5.62 6.15 -104.81 -0.64 -6.26 16 11 C 0.12 1.75 11.49 -16.97 -0.20 1.55 16 12 N -0.31 -4.53 12.47 30.88 0.38 -4.14 16 13 N -0.40 -4.88 4.00 -66.82 -0.27 -5.14 16 14 C 0.10 0.71 11.25 59.84 0.67 1.38 16 15 C 0.43 5.56 7.98 -153.78 -1.23 4.34 16 16 N -0.83 -8.05 9.02 31.40 0.28 -7.77 16 17 N -0.74 -16.14 3.60 -53.43 -0.19 -16.33 16 18 C -0.24 -6.39 10.41 -15.06 -0.16 -6.54 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 20 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 21 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 22 Si 0.88 21.64 27.74 -169.99 -4.71 16.92 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.06 1.16 7.61 -51.93 -0.39 0.77 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.72 6.32 -51.93 -0.33 0.39 16 33 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 34 H 0.07 1.13 6.17 -51.93 -0.32 0.81 16 35 H 0.41 6.70 7.08 -40.82 -0.29 6.41 16 36 H 0.19 2.55 7.50 -52.48 -0.39 2.16 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.33 7.46 -51.93 -0.39 -0.05 16 40 H 0.43 4.71 7.01 -40.82 -0.29 4.42 16 41 H 0.40 2.35 8.04 -40.82 -0.33 2.02 16 42 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -33.30 349.26 -6.45 -39.74 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -6.19 Total: 17.93 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.53 Total: 3.67 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: 0.65 Total: -73.04 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.30 -6.45 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753829567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.464 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds