Wall clock time and date at job start Tue Mar 31 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47002 * 2 1 4 4 C 1.53002 * 109.47175 * 120.00186 * 2 1 3 5 5 H 1.08997 * 109.46850 * 59.99647 * 4 2 1 6 6 C 1.53000 * 109.46655 * 300.00123 * 4 2 1 7 7 N 1.46502 * 109.46851 * 185.00176 * 6 4 2 8 8 C 1.34777 * 120.00044 * 180.02562 * 7 6 4 9 9 O 1.21687 * 119.99976 * 359.97438 * 8 7 6 10 10 C 1.46774 * 120.00097 * 180.02562 * 8 7 6 11 11 C 1.41485 * 126.51680 * 359.67713 * 10 8 7 12 12 N 1.30286 * 108.18969 * 180.26393 * 11 10 8 13 13 N 1.39898 * 109.23308 * 0.02562 * 12 11 10 14 14 C 1.46496 * 125.74718 * 180.02562 * 13 12 11 15 15 C 1.34847 * 108.50466 * 359.97438 * 13 12 11 16 16 N 1.38010 * 126.44568 * 180.02562 * 15 13 12 17 17 N 1.46492 * 109.47329 * 179.97438 * 4 2 1 18 18 C 1.36930 * 120.00216 * 274.99905 * 17 4 2 19 19 H 1.08002 * 120.00259 * 359.97438 * 18 17 4 20 20 C 1.38812 * 120.00075 * 179.97438 * 18 17 4 21 21 N 1.31618 * 120.00178 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00124 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.46844 * 89.99556 * 22 20 18 24 24 H 1.48496 * 109.47352 * 209.99422 * 22 20 18 25 25 H 1.48503 * 109.47128 * 330.00108 * 22 20 18 26 26 H 1.09002 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47109 * 299.99715 * 1 2 3 28 28 H 1.09001 * 109.46924 * 60.00105 * 1 2 3 29 29 H 1.09006 * 109.46885 * 239.99651 * 2 1 3 30 30 H 1.09002 * 109.46999 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47195 * 299.99729 * 3 2 1 32 32 H 1.08997 * 109.47645 * 59.99937 * 3 2 1 33 33 H 1.08996 * 109.47362 * 65.00140 * 6 4 2 34 34 H 1.09000 * 109.47186 * 304.99662 * 6 4 2 35 35 H 0.96994 * 120.00246 * 359.97438 * 7 6 4 36 36 H 1.08003 * 125.90714 * 0.26929 * 11 10 8 37 37 H 1.08999 * 109.47091 * 269.94861 * 14 13 12 38 38 H 1.08998 * 109.47202 * 29.95188 * 14 13 12 39 39 H 1.09001 * 109.46964 * 149.95795 * 14 13 12 40 40 H 0.97009 * 120.00055 * 179.97438 * 16 15 13 41 41 H 0.97001 * 120.00353 * 359.97438 * 16 15 13 42 42 H 0.97000 * 119.99763 * 94.99597 * 17 4 2 43 43 H 0.97000 * 120.00628 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 1.5300 0.0000 2.4984 7 7 2.1142 -0.6176 3.6916 8 6 1.8052 -0.1445 4.9152 9 8 1.0414 0.7960 5.0289 10 6 2.3909 -0.7628 6.1105 11 6 3.2849 -1.8591 6.1392 12 7 3.5730 -2.1166 7.3834 13 7 2.8919 -1.2165 8.2099 14 6 2.9560 -1.1813 9.6731 15 6 2.1673 -0.3861 7.4329 16 7 1.3568 0.6435 7.8662 17 7 3.5050 -0.7219 1.2490 18 6 4.1892 -1.6936 0.5688 19 1 3.6489 -2.4599 0.0328 20 6 5.5773 -1.6938 0.5681 21 7 6.2350 -2.6281 -0.0852 22 14 6.5120 -0.3688 1.4957 23 1 6.7600 -0.8209 2.8883 24 1 7.8093 -0.1129 0.8199 25 1 5.7096 0.8806 1.5164 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.4437 -0.0770 2.5443 34 1 1.8184 1.0502 2.4548 35 1 2.7227 -1.3675 3.6010 36 1 3.6632 -2.3906 5.2784 37 1 2.1757 -1.8202 10.0864 38 1 3.9313 -1.5392 10.0027 39 1 2.8086 -0.1580 10.0186 40 1 0.8755 1.1859 7.2219 41 1 1.2685 0.8249 8.8150 42 1 3.9903 -0.0338 1.7306 43 1 7.2050 -2.6285 -0.0854 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753829567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:22 Heat of formation + Delta-G solvation = 20.013447 kcal Electronic energy + Delta-G solvation = -24364.019644 eV Core-core repulsion = 20865.860982 eV Total energy + Delta-G solvation = -3498.158662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31594 -40.26850 -38.71704 -36.01637 -35.10848 -34.83115 -33.95827 -32.68645 -30.19590 -28.88814 -27.91470 -27.67799 -25.47127 -23.99245 -23.30659 -21.75798 -21.11317 -20.10733 -19.80294 -18.82368 -17.74923 -17.32631 -16.92481 -16.83480 -16.65214 -15.91008 -15.74097 -15.34098 -15.16293 -14.92672 -14.72966 -14.29276 -14.19464 -14.07531 -13.92623 -13.55597 -13.50601 -12.95679 -12.81415 -12.63835 -12.52458 -12.25374 -12.20589 -12.03075 -11.88327 -11.78741 -11.58968 -11.16765 -10.93357 -10.76273 -10.06549 -9.83551 -9.24291 -8.84800 -7.95665 -5.27326 0.83308 1.21994 1.30509 1.41599 1.42494 1.48513 2.50486 2.52253 2.60333 2.77211 3.36401 3.54506 3.64128 3.93579 4.04386 4.20489 4.24695 4.34345 4.38634 4.48258 4.50358 4.54170 4.59859 4.66255 4.81095 4.92098 4.96554 5.13736 5.20223 5.24692 5.35545 5.38514 5.52060 5.58726 5.61194 5.74874 5.87473 6.27149 6.27953 6.50745 6.71894 6.92811 7.14371 7.42771 7.89970 8.08793 9.25901 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.005054 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.171064 B = 5538.643751 C = 7023.564546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.174 3.826 5 H 0.056 0.944 6 C 0.122 3.878 7 N -0.717 5.717 8 C 0.599 3.401 9 O -0.599 6.599 10 C -0.397 4.397 11 C 0.109 3.891 12 N -0.329 5.329 13 N -0.400 5.400 14 C 0.090 3.910 15 C 0.433 3.567 16 N -0.813 5.813 17 N -0.742 5.742 18 C -0.214 4.214 19 H 0.063 0.937 20 C -0.053 4.053 21 N -0.982 5.982 22 Si 0.938 3.062 23 H -0.278 1.278 24 H -0.304 1.304 25 H -0.261 1.261 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.406 0.594 36 H 0.195 0.805 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.428 0.572 41 H 0.416 0.584 42 H 0.363 0.637 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.480 7.527 18.317 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.195 4.195 4 C 0.066 3.934 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.367 5.367 8 C 0.390 3.610 9 O -0.483 6.483 10 C -0.417 4.417 11 C -0.081 4.081 12 N -0.148 5.148 13 N -0.189 5.189 14 C -0.049 4.049 15 C 0.196 3.804 16 N -0.365 5.365 17 N -0.385 5.385 18 C -0.345 4.345 19 H 0.081 0.919 20 C -0.245 4.245 21 N -0.633 5.633 22 Si 0.768 3.232 23 H -0.204 1.204 24 H -0.231 1.231 25 H -0.186 1.186 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.242 0.758 36 H 0.211 0.789 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.264 0.736 41 H 0.248 0.752 42 H 0.196 0.804 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.291 7.210 19.197 23.907 hybrid contribution 0.906 0.810 -0.440 1.293 sum -11.385 8.020 18.757 23.361 Atomic orbital electron populations 1.21836 0.93636 1.01973 1.02361 1.21578 0.96210 0.96617 0.98530 1.21744 1.00270 0.95877 1.01617 1.20644 0.82640 0.97710 0.92399 0.92564 1.21682 0.98275 0.96986 0.83264 1.45716 1.49118 1.36724 1.05135 1.17135 0.79555 0.81661 0.82605 1.90599 1.39636 1.30806 1.87243 1.19380 1.19669 1.11026 0.91589 1.24037 0.93882 0.94401 0.95760 1.77076 1.20934 1.14894 1.01852 1.48484 1.37205 1.25320 1.07884 1.22222 1.05766 1.05294 0.71642 1.18084 0.87233 0.85919 0.89184 1.41705 1.49593 1.32906 1.12263 1.42756 1.02019 1.32009 1.61722 1.18971 0.89261 1.03590 1.22642 0.91899 1.25243 0.97216 1.00180 1.01837 1.69850 1.06947 1.37426 1.49096 0.85660 0.78122 0.80718 0.78731 1.20402 1.23104 1.18579 0.92567 0.91704 0.91979 0.93179 0.94696 0.92233 0.92106 0.89892 0.91939 0.75811 0.78864 0.89126 0.88344 0.87235 0.73581 0.75194 0.80390 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.84 71.98 0.64 -2.81 16 2 C -0.11 -3.44 2.91 -10.79 -0.03 -3.47 16 3 C -0.14 -4.23 8.69 71.98 0.63 -3.61 16 4 C 0.17 6.09 2.27 44.99 0.10 6.20 16 5 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 6 C 0.12 3.80 4.51 86.38 0.39 4.19 16 7 N -0.72 -22.96 5.38 -466.98 -2.51 -25.47 16 8 C 0.60 19.48 7.79 86.47 0.67 20.15 16 9 O -0.60 -20.77 15.14 -4.31 -0.07 -20.84 16 10 C -0.40 -11.75 6.15 -19.99 -0.12 -11.88 16 11 C 0.11 3.19 11.49 85.72 0.99 4.18 16 12 N -0.33 -9.37 12.47 -56.22 -0.70 -10.07 16 13 N -0.40 -8.81 4.00 -365.32 -1.46 -10.27 16 14 C 0.09 0.97 11.25 127.77 1.44 2.40 16 15 C 0.43 10.36 7.98 132.69 1.06 11.42 16 16 N -0.81 -13.55 9.02 -54.57 -0.49 -14.05 16 17 N -0.74 -32.03 3.60 -322.96 -1.16 -33.20 16 18 C -0.21 -11.41 10.41 84.03 0.87 -10.53 16 19 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 20 C -0.05 -3.03 5.50 84.86 0.47 -2.56 16 21 N -0.98 -61.58 13.97 21.65 0.30 -61.28 16 22 Si 0.94 45.27 27.74 68.60 1.90 47.18 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 25 H -0.26 -11.69 6.52 99.48 0.65 -11.04 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.46 6.54 -2.39 -0.02 1.44 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.03 1.25 7.61 -2.39 -0.02 1.23 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.70 6.32 -2.39 -0.02 1.68 16 33 H 0.08 2.37 6.71 -2.39 -0.02 2.35 16 34 H 0.06 2.02 6.17 -2.39 -0.01 2.00 16 35 H 0.41 13.25 7.08 -92.71 -0.66 12.59 16 36 H 0.19 5.25 7.50 -2.91 -0.02 5.23 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.49 7.46 -2.39 -0.02 0.47 16 40 H 0.43 8.34 7.01 -92.70 -0.65 7.69 16 41 H 0.42 3.48 8.04 -92.71 -0.75 2.74 16 42 H 0.36 15.78 5.66 -92.71 -0.52 15.25 16 43 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -72.75 349.26 1.34 -71.41 By element: Atomic # 1 Polarization: 44.48 SS G_CDS: -1.56 Total: 42.91 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 7.10 Total: 13.68 kcal Atomic # 7 Polarization: -148.31 SS G_CDS: -6.03 Total: -154.34 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.07 Total: -20.84 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.18 kcal Total: -72.75 1.34 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753829567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.423 kcal (2) G-P(sol) polarization free energy of solvation -72.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds