Wall clock time and date at job start Tue Mar 31 2020 03:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 119.99941 * 2 1 4 4 O 1.21280 * 119.99875 * 354.88090 * 3 2 1 5 5 C 1.50697 * 120.00022 * 174.87201 * 3 2 1 6 6 C 1.50702 * 112.84749 * 54.63873 * 5 3 2 7 7 O 1.21277 * 120.00444 * 245.65904 * 6 5 3 8 8 N 1.34784 * 119.99713 * 65.66084 * 6 5 3 9 9 C 1.46506 * 119.99286 * 174.84363 * 8 6 5 10 10 C 1.53009 * 109.46476 * 180.02562 * 9 8 6 11 11 H 1.09002 * 112.96328 * 306.67839 * 10 9 8 12 12 C 1.53941 * 113.76605 * 175.00177 * 10 9 8 13 13 C 1.53952 * 86.28810 * 222.09143 * 12 10 9 14 14 N 1.47578 * 113.76787 * 78.50378 * 10 9 8 15 15 C 1.36931 * 134.49702 * 318.94529 * 14 10 9 16 16 H 1.08001 * 120.00186 * 5.82751 * 15 14 10 17 17 C 1.38819 * 120.00052 * 185.83512 * 15 14 10 18 18 N 1.31612 * 120.00139 * 5.69616 * 17 15 14 19 19 Si 1.86793 * 119.99792 * 185.69892 * 17 15 14 20 20 H 1.48502 * 109.47264 * 94.99194 * 19 17 15 21 21 H 1.48502 * 109.47249 * 214.99214 * 19 17 15 22 22 H 1.48500 * 109.47554 * 334.99161 * 19 17 15 23 23 C 1.53780 * 113.61794 * 283.33274 * 5 3 2 24 24 C 1.53782 * 87.08060 * 220.01752 * 23 5 3 25 25 C 1.53775 * 87.08286 * 25.43237 * 24 23 5 26 26 H 1.09003 * 109.47349 * 299.99493 * 1 2 3 27 27 H 1.08996 * 109.47372 * 59.99824 * 1 2 3 28 28 H 1.09004 * 109.47351 * 180.02562 * 1 2 3 29 29 H 0.96994 * 120.00085 * 179.73060 * 2 1 3 30 30 H 0.96991 * 120.00350 * 354.84124 * 8 6 5 31 31 H 1.08995 * 109.47487 * 299.99579 * 9 8 6 32 32 H 1.08999 * 109.47111 * 60.00216 * 9 8 6 33 33 H 1.08995 * 113.74344 * 336.43314 * 12 10 9 34 34 H 1.08995 * 113.74050 * 107.64093 * 12 10 9 35 35 H 1.09001 * 113.76712 * 137.91309 * 13 12 10 36 36 H 1.08997 * 113.76647 * 269.19182 * 13 12 10 37 37 H 0.97000 * 120.00491 * 179.97438 * 18 17 15 38 38 H 1.08998 * 113.61258 * 334.56725 * 23 5 3 39 39 H 1.09006 * 113.61072 * 105.46853 * 23 5 3 40 40 H 1.08998 * 113.61397 * 270.88146 * 24 23 5 41 41 H 1.08996 * 113.68813 * 139.99529 * 24 23 5 42 42 H 1.08996 * 113.61807 * 220.02077 * 25 24 23 43 43 H 1.09004 * 113.69487 * 89.12563 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5360 2.2154 -0.0937 5 6 3.6413 1.1699 0.1166 6 6 4.3110 0.3173 -0.9302 7 8 4.9235 -0.6766 -0.6020 8 7 4.2291 0.6595 -2.2313 9 6 4.9725 -0.1032 -3.2373 10 6 4.7081 0.4882 -4.6235 11 1 3.6462 0.5717 -4.8548 12 6 5.5379 -0.1634 -5.7445 13 6 5.7465 1.2637 -6.2828 14 7 5.4786 1.7153 -4.9035 15 6 5.8115 2.8265 -4.1759 16 1 5.5632 2.8789 -3.1261 17 6 6.4678 3.8858 -4.7877 18 7 6.6706 3.8716 -6.0880 19 14 7.0633 5.3311 -3.7652 20 1 8.4871 5.1240 -3.3972 21 1 6.9329 6.5826 -4.5540 22 1 6.2435 5.4360 -2.5315 23 6 4.1488 0.9076 1.5444 24 6 5.2171 1.9811 1.2774 25 6 4.2468 2.5777 0.2443 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.9499 -0.8400 0.0039 30 1 3.6781 1.4106 -2.5015 31 1 6.0389 -0.0512 -3.0180 32 1 4.6478 -1.1435 -3.2177 33 1 6.4540 -0.6381 -5.3932 34 1 4.9548 -0.8032 -6.4069 35 1 6.7639 1.4617 -6.6202 36 1 4.9910 1.5761 -7.0038 37 1 7.1289 4.6119 -6.5155 38 1 3.4347 1.1855 2.3195 39 1 4.5599 -0.0921 1.6848 40 1 6.1333 1.5858 0.8386 41 1 5.4038 2.6346 2.1295 42 1 4.7369 2.9262 -0.6647 43 1 3.5590 3.3125 0.6627 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754500211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:58 Heat of formation + Delta-G solvation = 1.561702 kcal Electronic energy + Delta-G solvation = -25011.753045 eV Core-core repulsion = 21480.501504 eV Total energy + Delta-G solvation = -3531.251541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16028 -38.98054 -38.06840 -36.94877 -34.72419 -34.17173 -32.20294 -29.09811 -27.99306 -27.58474 -25.69598 -25.49495 -23.38821 -22.56783 -21.27564 -21.02973 -19.48742 -18.88510 -18.22927 -16.71596 -16.29256 -16.07285 -15.73311 -15.31944 -15.16998 -14.88983 -14.55365 -14.22430 -13.84524 -13.60347 -13.21243 -13.03082 -12.91135 -12.55619 -12.48280 -12.10730 -11.84397 -11.43574 -11.39578 -11.16957 -11.08410 -10.96897 -10.76837 -10.53513 -10.45408 -10.12341 -9.88987 -9.76650 -9.62956 -9.38442 -9.28607 -8.79721 -8.68844 -6.91815 -5.79378 -3.10714 2.40207 2.62321 3.08403 3.32073 3.38706 3.43826 3.45431 4.39496 4.41858 4.43776 4.62838 4.76819 4.78407 5.03519 5.11097 5.29654 5.33904 5.39236 5.56827 5.58425 5.60252 5.67148 5.77177 5.87162 5.90753 5.96687 6.01013 6.06707 6.19458 6.23944 6.34633 6.36369 6.57711 6.64596 6.79335 7.20909 7.25590 7.37381 7.54165 7.73029 7.95757 8.02842 8.35057 9.02497 9.69432 10.57777 11.38434 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.005427 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.648104 B = 5157.763052 C = 6014.287113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.536 3.464 4 O -0.526 6.526 5 C -0.138 4.138 6 C 0.539 3.461 7 O -0.540 6.540 8 N -0.705 5.705 9 C 0.123 3.877 10 C 0.124 3.876 11 H 0.048 0.952 12 C -0.156 4.156 13 C 0.165 3.835 14 N -0.600 5.600 15 C -0.221 4.221 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.905 3.095 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.279 1.279 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.109 4.109 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.405 0.595 30 H 0.406 0.594 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.253 0.747 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.552 -9.629 11.513 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.384 5.384 3 C 0.321 3.679 4 O -0.401 6.401 5 C -0.144 4.144 6 C 0.322 3.678 7 O -0.418 6.418 8 N -0.354 5.354 9 C -0.001 4.001 10 C 0.016 3.984 11 H 0.066 0.934 12 C -0.195 4.195 13 C 0.040 3.960 14 N -0.327 5.327 15 C -0.349 4.349 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.735 3.265 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.143 4.143 24 C -0.177 4.177 25 C -0.147 4.147 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.238 0.762 30 H 0.240 0.760 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.421 -9.235 11.696 17.117 hybrid contribution 0.089 0.916 0.220 0.946 sum -8.331 -8.319 11.916 16.751 Atomic orbital electron populations 1.21557 0.79423 1.02278 1.02403 1.45814 1.07844 1.08841 1.75900 1.20006 0.88503 0.83758 0.75681 1.90720 1.69649 1.31401 1.48366 1.22402 0.92251 1.01203 0.98574 1.19418 0.80641 0.84748 0.82957 1.90672 1.43324 1.26570 1.81237 1.45966 1.48747 1.34649 1.06013 1.21828 0.96759 0.94092 0.87405 1.22495 0.95458 0.88770 0.91645 0.93435 1.23772 0.99503 0.98635 0.97573 1.22078 0.99965 0.86335 0.87641 1.46158 1.58020 1.18392 1.10098 1.18953 1.31702 0.92525 0.91714 0.90347 1.24776 1.01809 0.97922 0.95672 1.69829 1.46445 1.32425 1.07821 0.86209 0.78841 0.82232 0.79187 1.21598 1.21733 1.20414 1.22781 0.98205 1.01634 0.91652 1.22853 0.97630 0.97752 0.99493 1.22907 0.97883 0.92730 1.01148 0.92262 0.91959 0.90615 0.76152 0.75969 0.90800 0.91973 0.90511 0.92719 0.91842 0.95153 0.93669 0.89312 0.89112 0.89418 0.90520 0.89650 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.71 59.84 0.64 1.41 16 2 N -0.73 -8.03 5.65 -67.08 -0.38 -8.41 16 3 C 0.54 7.50 6.85 -10.99 -0.08 7.43 16 4 O -0.53 -8.98 15.96 5.56 0.09 -8.89 16 5 C -0.14 -1.91 1.07 -156.00 -0.17 -2.08 16 6 C 0.54 8.58 6.13 -10.98 -0.07 8.51 16 7 O -0.54 -9.61 15.96 5.56 0.09 -9.52 16 8 N -0.70 -11.79 5.51 -60.29 -0.33 -12.12 16 9 C 0.12 2.15 5.54 -4.03 -0.02 2.12 16 10 C 0.12 2.35 4.33 -66.86 -0.29 2.06 16 11 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.16 -2.77 7.86 -25.80 -0.20 -2.97 16 13 C 0.17 3.75 7.33 -2.97 -0.02 3.72 16 14 N -0.60 -14.47 3.57 -170.73 -0.61 -15.08 16 15 C -0.22 -5.90 10.50 -15.06 -0.16 -6.06 16 16 H 0.08 2.02 7.79 -52.49 -0.41 1.61 16 17 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 18 N -0.92 -26.91 11.66 55.49 0.65 -26.26 16 19 Si 0.90 22.02 29.56 -169.99 -5.02 17.00 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C -0.10 -1.23 7.09 -25.92 -0.18 -1.41 16 24 C -0.14 -1.74 7.80 -25.92 -0.20 -1.94 16 25 C -0.11 -1.56 6.95 -25.92 -0.18 -1.74 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.40 3.93 8.59 -40.82 -0.35 3.58 16 30 H 0.41 7.04 8.48 -40.82 -0.35 6.70 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.58 7.58 -51.93 -0.39 1.19 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.09 1.08 7.35 -51.93 -0.38 0.70 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 43 H 0.10 1.43 7.51 -51.93 -0.39 1.04 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -32.33 358.16 -8.04 -40.37 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.89 Total: 8.68 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.02 Total: 8.82 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.67 Total: -61.86 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.33 -8.04 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754500211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.933 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds