Wall clock time and date at job start Tue Mar 31 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46762 * 124.34822 * 2 1 4 4 C 1.54478 * 105.47506 * 197.03868 * 3 2 1 5 5 C 1.54628 * 101.76358 * 334.58541 * 4 3 2 6 6 H 1.08992 * 110.60345 * 266.05996 * 5 4 3 7 7 C 1.50705 * 110.48434 * 143.47258 * 5 4 3 8 8 O 1.21275 * 119.99947 * 3.77419 * 7 5 4 9 9 N 1.34776 * 119.99715 * 183.77267 * 7 5 4 10 10 C 1.46505 * 119.99597 * 180.02562 * 9 7 5 11 11 H 1.08998 * 112.91090 * 23.74977 * 10 9 7 12 12 C 1.53781 * 113.61334 * 154.99978 * 10 9 7 13 13 C 1.53786 * 87.17350 * 89.07333 * 12 10 9 14 14 H 1.09000 * 113.60973 * 270.92699 * 13 12 10 15 15 C 1.52990 * 113.61464 * 140.02626 * 13 12 10 16 16 N 1.46497 * 109.47171 * 174.99989 * 15 13 12 17 17 C 1.36943 * 120.00258 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99582 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00111 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99838 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47238 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47503 * 119.99924 * 21 19 17 24 24 H 1.48499 * 109.47390 * 240.00174 * 21 19 17 25 25 C 1.53781 * 113.61146 * 252.49455 * 10 9 7 26 26 C 1.34415 * 124.35149 * 180.02562 * 2 1 3 27 27 O 1.21277 * 124.93984 * 359.59959 * 26 2 1 28 28 H 1.08998 * 109.46641 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46810 * 299.94614 * 1 2 3 30 30 H 1.08999 * 109.46780 * 59.94749 * 1 2 3 31 31 H 1.09005 * 110.25109 * 316.04236 * 3 2 1 32 32 H 1.09004 * 110.24746 * 77.95320 * 3 2 1 33 33 H 1.09000 * 110.97111 * 216.46824 * 4 3 2 34 34 H 1.09002 * 110.96646 * 92.70813 * 4 3 2 35 35 H 0.96995 * 120.00232 * 359.97438 * 9 7 5 36 36 H 1.09002 * 113.61445 * 203.66333 * 12 10 9 37 37 H 1.09002 * 113.61408 * 334.48063 * 12 10 9 38 38 H 1.09007 * 109.47036 * 294.99322 * 15 13 12 39 39 H 1.08994 * 109.47734 * 54.99728 * 15 13 12 40 40 H 0.97003 * 120.00176 * 359.97438 * 16 15 13 41 41 H 0.97010 * 119.99988 * 180.02562 * 20 19 17 42 42 H 1.09005 * 113.61471 * 25.43638 * 25 10 9 43 43 H 1.09003 * 113.61469 * 156.33416 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7009 0.7489 -0.4362 5 6 3.6899 -0.7377 -0.0110 6 1 4.1204 -0.8555 0.9833 7 6 4.4401 -1.5782 -1.0120 8 8 5.0032 -1.0494 -1.9469 9 7 4.4851 -2.9175 -0.8682 10 6 5.2148 -3.7345 -1.8411 11 1 5.9909 -3.1773 -2.3659 12 6 5.6983 -5.0804 -1.2757 13 6 4.3467 -5.6653 -1.7185 14 1 3.5669 -5.5843 -0.9612 15 6 4.4529 -7.0696 -2.3162 16 7 3.1100 -7.5845 -2.5948 17 6 2.9539 -8.8322 -3.1372 18 1 3.8209 -9.4364 -3.3599 19 6 1.6814 -9.3203 -3.4007 20 7 0.6249 -8.5837 -3.1297 21 14 1.4685 -11.0225 -4.1399 22 1 2.8020 -11.6421 -4.3482 23 1 0.6698 -11.8672 -3.2158 24 1 0.7646 -10.9119 -5.4427 25 6 4.2999 -4.5447 -2.7745 26 6 2.2235 -1.1097 -0.0005 27 8 1.7947 -2.2441 0.0059 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5130 0.8904 30 1 -0.3633 0.5147 -0.8895 31 1 1.8982 1.9386 -0.7099 32 1 2.3298 1.6436 1.0002 33 1 4.4755 1.3011 0.0960 34 1 3.8264 0.8453 -1.5147 35 1 4.0350 -3.3404 -0.1203 36 1 6.5511 -5.4978 -1.8111 37 1 5.8387 -5.0748 -0.1948 38 1 5.0253 -7.0277 -3.2429 39 1 4.9551 -7.7288 -1.6083 40 1 2.3312 -7.0417 -2.3951 41 1 -0.2644 -8.9249 -3.3135 42 1 3.3100 -4.1071 -2.9035 43 1 4.7704 -4.8157 -3.7198 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755476303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:45 Heat of formation + Delta-G solvation = -34.013776 kcal Electronic energy + Delta-G solvation = -23854.626694 eV Core-core repulsion = 20321.832485 eV Total energy + Delta-G solvation = -3532.794209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22201 -39.68293 -38.15379 -36.69381 -34.45517 -33.34899 -32.80808 -30.76899 -28.46440 -27.12434 -26.59408 -25.40396 -23.64108 -22.69506 -21.32865 -21.04269 -19.81589 -18.96964 -17.72880 -17.17124 -16.96971 -16.52094 -15.90822 -15.40464 -14.83531 -14.70131 -14.43856 -14.11543 -13.96047 -13.83717 -13.55425 -13.21253 -13.14394 -12.82699 -12.68380 -12.47964 -12.31846 -12.17104 -11.95636 -11.56575 -11.47630 -10.96806 -10.79230 -10.40249 -10.25905 -10.21017 -9.99603 -9.93423 -9.73594 -9.53281 -9.08692 -8.93627 -8.77128 -6.81606 -5.67811 -2.96020 2.07262 2.44234 2.75056 3.10406 3.48332 3.53373 3.56051 3.85959 4.02562 4.45562 4.54699 4.64913 4.74502 4.80467 4.88308 4.93306 4.97394 5.10118 5.17353 5.20641 5.24634 5.41947 5.46777 5.65891 5.69434 5.80772 5.93702 6.02058 6.09608 6.11908 6.21790 6.35849 6.41134 6.52670 6.68990 6.70366 6.87943 7.04026 7.47538 7.77639 7.80703 8.11714 8.51111 9.61874 10.22466 10.56900 11.55138 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003241 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.173974 B = 8637.272211 C = 9771.094701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.622 5.622 3 C 0.101 3.899 4 C -0.115 4.115 5 C -0.150 4.150 6 H 0.135 0.865 7 C 0.534 3.466 8 O -0.538 6.538 9 N -0.694 5.694 10 C 0.114 3.886 11 H 0.099 0.901 12 C -0.137 4.137 13 C -0.113 4.113 14 H 0.089 0.911 15 C 0.163 3.837 16 N -0.732 5.732 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.138 4.138 26 C 0.523 3.477 27 O -0.508 6.508 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.408 0.592 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.068 0.932 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.380 23.753 10.089 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.357 5.357 3 C -0.022 4.022 4 C -0.153 4.153 5 C -0.175 4.175 6 H 0.153 0.847 7 C 0.318 3.682 8 O -0.415 6.415 9 N -0.344 5.344 10 C 0.009 3.991 11 H 0.117 0.883 12 C -0.176 4.176 13 C -0.132 4.132 14 H 0.108 0.892 15 C 0.036 3.964 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.177 4.177 26 C 0.309 3.691 27 O -0.382 6.382 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.244 0.756 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.218 0.782 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.503 23.340 9.350 25.970 hybrid contribution -0.841 -0.928 0.101 1.256 sum 5.662 22.411 9.451 24.973 Atomic orbital electron populations 1.21621 0.77367 1.04324 1.01585 1.48056 1.06798 1.07124 1.73722 1.22172 0.90442 0.87480 1.02105 1.22593 0.96302 0.91738 1.04710 1.22182 0.95090 0.97891 1.02314 0.84702 1.19684 0.80396 0.82625 0.85494 1.90695 1.46102 1.72366 1.32337 1.45658 1.53361 1.05903 1.29505 1.21969 0.95158 0.90978 0.90974 0.88258 1.23304 0.98680 0.94597 1.01007 1.22804 0.96515 0.95658 0.98202 0.89225 1.20623 0.89107 0.90626 0.96066 1.42381 1.01829 1.17495 1.75911 1.19294 0.92170 0.92425 1.32937 0.91220 1.24748 0.95509 0.98528 1.02435 1.69689 0.97280 1.36944 1.54260 0.86125 0.77439 0.84205 0.78495 1.20599 1.21936 1.21933 1.23439 1.00256 0.96185 0.97798 1.20338 0.87917 0.84865 0.76009 1.90830 1.77811 1.20505 1.49063 0.89482 0.91889 0.91817 0.89881 0.90709 0.88480 0.88032 0.75568 0.88701 0.91292 0.96291 0.96458 0.78239 0.93657 0.91302 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.14 59.85 0.67 1.38 16 2 N -0.62 -5.65 3.33 -180.28 -0.60 -6.25 16 3 C 0.10 0.57 7.35 -3.12 -0.02 0.55 16 4 C -0.12 -0.79 6.45 -25.10 -0.16 -0.95 16 5 C -0.15 -1.41 3.33 -91.78 -0.31 -1.72 16 6 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 7 C 0.53 6.94 7.16 -10.98 -0.08 6.86 16 8 O -0.54 -8.43 15.12 5.56 0.08 -8.35 16 9 N -0.69 -9.14 4.96 -53.01 -0.26 -9.40 16 10 C 0.11 1.59 4.32 -67.11 -0.29 1.30 16 11 H 0.10 1.39 7.47 -51.93 -0.39 1.00 16 12 C -0.14 -1.81 7.38 -25.92 -0.19 -2.00 16 13 C -0.11 -1.94 3.64 -89.67 -0.33 -2.26 16 14 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 15 C 0.16 3.45 6.10 -4.05 -0.02 3.43 16 16 N -0.73 -19.64 5.60 -59.91 -0.34 -19.97 16 17 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 20 N -0.93 -29.45 13.06 55.49 0.72 -28.73 16 21 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 C -0.14 -2.29 7.44 -25.78 -0.19 -2.48 16 26 C 0.52 6.23 7.44 -10.86 -0.08 6.15 16 27 O -0.51 -8.11 16.17 5.56 0.09 -8.02 16 28 H 0.09 0.84 7.53 -51.93 -0.39 0.45 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.90 7.06 -51.93 -0.37 0.53 16 35 H 0.41 5.17 7.91 -40.82 -0.32 4.84 16 36 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.38 10.94 7.67 -40.82 -0.31 10.63 16 41 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.47 7.90 -51.93 -0.41 1.06 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -36.57 355.43 -8.02 -44.58 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.79 Total: 10.06 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.25 Total: 2.55 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.48 Total: -64.35 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.17 Total: -16.36 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.57 -8.02 -44.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755476303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.570 kcal (2) G-P(sol) polarization free energy of solvation -36.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds