Wall clock time and date at job start Tue Mar 31 2020 03:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.50695 * 109.47279 * 119.99841 * 2 1 3 5 5 H 1.07999 * 120.00376 * 119.99739 * 4 2 1 6 6 C 1.37876 * 120.00418 * 300.00150 * 4 2 1 7 7 N 1.31518 * 119.99687 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00415 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47329 * 60.00060 * 8 6 4 10 10 H 1.48503 * 109.47107 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46951 * 299.99678 * 8 6 4 12 12 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 13 13 C 1.34777 * 120.00271 * 84.99619 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 17 17 C 1.53002 * 109.46966 * 300.00385 * 15 13 12 18 18 N 1.46505 * 109.47064 * 180.02562 * 15 13 12 19 19 N 1.29020 * 126.43760 * 60.02584 * 18 15 13 20 20 N 1.28730 * 108.80898 * 179.97438 * 19 18 15 21 21 N 1.28835 * 109.39969 * 359.97438 * 20 19 18 22 22 C 1.31071 * 107.98914 * 359.75230 * 21 20 19 23 23 C 1.50704 * 126.66181 * 180.23813 * 22 21 20 24 24 C 1.53001 * 109.47380 * 240.17518 * 23 22 21 25 25 C 1.52995 * 109.47024 * 0.17905 * 23 22 21 26 26 C 1.52999 * 109.46916 * 120.17473 * 23 22 21 27 27 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 29 29 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 30 30 H 0.97003 * 120.00117 * 179.97438 * 7 6 4 31 31 H 0.97005 * 120.00266 * 265.00202 * 12 2 1 32 32 H 1.08996 * 109.47407 * 60.00310 * 17 15 13 33 33 H 1.09000 * 109.46986 * 180.02562 * 17 15 13 34 34 H 1.09002 * 109.47075 * 299.99352 * 17 15 13 35 35 H 1.09004 * 109.47026 * 59.99827 * 24 23 22 36 36 H 1.08999 * 109.47028 * 180.02562 * 24 23 22 37 37 H 1.08997 * 109.46949 * 300.00447 * 24 23 22 38 38 H 1.08997 * 109.47173 * 59.99844 * 25 23 22 39 39 H 1.08999 * 109.47067 * 179.97438 * 25 23 22 40 40 H 1.09001 * 109.46987 * 299.99325 * 25 23 22 41 41 H 1.09010 * 109.47178 * 59.99959 * 26 23 22 42 42 H 1.08999 * 109.47221 * 179.97438 * 26 23 22 43 43 H 1.08997 * 109.47425 * 300.00244 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0082 10 1 1.8270 -0.4198 5.2204 11 1 1.8258 -2.5201 4.0077 12 7 2.0183 -0.6906 -1.1961 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1585 -2.4115 15 6 2.6487 -0.7289 -3.5878 16 1 1.9758 -1.5507 -3.8326 17 6 4.0512 -1.2799 -3.3222 18 7 2.6986 0.2126 -4.7091 19 7 3.3925 1.2988 -4.7674 20 7 3.1839 1.8639 -5.9051 21 7 2.3575 1.1525 -6.5912 22 6 2.0345 0.1036 -5.8747 23 6 1.0981 -1.0068 -6.2763 24 6 -0.0684 -1.0726 -5.2884 25 6 0.5606 -0.7369 -7.6830 26 6 1.8515 -2.3384 -6.2651 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.7089 1.1614 3.4844 31 1 2.2490 -1.6318 -1.1526 32 1 4.0144 -1.9804 -2.4879 33 1 4.4143 -1.7935 -4.2125 34 1 4.7241 -0.4581 -3.0775 35 1 -0.6052 -0.1239 -5.2964 36 1 -0.7454 -1.8760 -5.5787 37 1 0.3146 -1.2649 -4.2863 38 1 1.3916 -0.6901 -8.3867 39 1 -0.1164 -1.5402 -7.9737 40 1 0.0237 0.2117 -7.6910 41 1 2.2346 -2.5308 -5.2628 42 1 1.1742 -3.1416 -6.5551 43 1 2.6826 -2.2916 -6.9688 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273349510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:53 Heat of formation + Delta-G solvation = 68.157200 kcal Electronic energy + Delta-G solvation = -25098.447588 eV Core-core repulsion = 21602.376596 eV Total energy + Delta-G solvation = -3496.070992 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.09116 -39.51372 -37.61928 -35.81572 -34.92089 -32.81205 -31.81910 -31.09864 -28.85105 -27.77370 -27.72392 -25.54206 -25.34002 -23.82477 -23.26245 -21.22044 -20.13510 -19.69280 -18.05130 -17.08479 -16.65247 -15.99791 -15.71313 -15.45157 -14.91310 -14.45725 -14.34027 -14.11019 -13.55347 -13.25946 -12.91527 -12.80009 -12.73752 -12.53641 -12.50161 -12.29856 -12.06101 -12.01706 -11.79491 -11.69450 -11.44304 -11.23210 -11.13221 -11.05452 -10.92054 -10.87734 -10.82234 -10.45854 -10.34969 -9.91372 -9.29838 -9.20583 -8.68527 -8.18760 -6.22963 -4.33799 1.39632 1.94090 2.42314 2.87830 3.18475 3.24412 3.25172 3.55314 3.71586 4.15305 4.24783 4.26800 4.44194 4.50399 4.70121 4.92345 4.95609 5.09813 5.14902 5.21054 5.29769 5.36953 5.39192 5.46413 5.49228 5.57331 5.63923 5.73404 5.82123 5.91975 5.92747 6.05778 6.25623 6.65995 6.77153 6.97493 7.18815 7.33665 7.53607 7.74280 8.00109 8.35001 8.57366 8.79856 8.81820 9.33732 10.82945 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025320 B = 0.003907 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.601342 B = 7165.331307 C = 7323.552343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.051 0.949 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.696 5.696 13 C 0.494 3.506 14 O -0.523 6.523 15 C 0.111 3.889 16 H 0.139 0.861 17 C -0.161 4.161 18 N -0.281 5.281 19 N -0.062 5.062 20 N -0.088 5.088 21 N -0.304 5.304 22 C 0.188 3.812 23 C 0.015 3.985 24 C -0.152 4.152 25 C -0.130 4.130 26 C -0.151 4.151 27 H 0.028 0.972 28 H 0.093 0.907 29 H 0.013 0.987 30 H 0.267 0.733 31 H 0.390 0.610 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 -11.392 -15.282 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.069 0.931 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.345 5.345 13 C 0.275 3.725 14 O -0.399 6.399 15 C 0.005 3.995 16 H 0.156 0.844 17 C -0.219 4.219 18 N -0.082 5.082 19 N -0.047 5.047 20 N -0.081 5.081 21 N -0.152 5.152 22 C -0.090 4.090 23 C 0.011 3.989 24 C -0.210 4.210 25 C -0.188 4.188 26 C -0.209 4.209 27 H 0.047 0.953 28 H 0.111 0.889 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.223 0.777 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.563 -9.119 -15.365 17.876 hybrid contribution -0.016 -1.635 1.332 2.109 sum 0.547 -10.754 -14.033 17.688 Atomic orbital electron populations 1.22091 0.98201 0.99245 1.01081 1.18842 0.91132 0.94103 0.79381 0.93115 1.21110 1.32986 1.13452 0.90105 0.91966 1.24885 0.94680 0.94894 0.99115 1.69886 1.35475 1.22236 1.24236 0.86476 0.79217 0.79533 0.81698 1.20095 1.21060 1.20095 1.46490 1.64604 1.13582 1.09851 1.19933 0.80193 0.87918 0.84469 1.90791 1.49775 1.15106 1.84246 1.22114 1.02435 0.90212 0.84779 0.84380 1.22161 0.92862 1.03010 1.03833 1.48035 1.29685 1.17039 1.13484 1.78944 1.14645 0.94943 1.16183 1.78597 1.11684 1.20633 0.97210 1.74904 1.12235 1.02351 1.25754 1.25941 0.99339 0.99353 0.84406 1.19222 0.91983 0.89365 0.98312 1.22095 0.97118 1.03839 0.97967 1.21732 1.01563 1.02621 0.92873 1.22104 1.01003 0.95192 1.02613 0.95260 0.88896 0.96754 0.92339 0.77674 0.88542 0.90749 0.89738 0.91322 0.90187 0.92324 0.91475 0.91345 0.91385 0.92222 0.90179 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.26 37.16 0.34 -3.12 16 2 C 0.27 6.37 2.56 -69.09 -0.18 6.19 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -13.39 8.73 -34.44 -0.30 -13.69 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.05 11.32 55.43 0.63 -23.42 16 8 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 N -0.70 -12.86 4.96 -54.94 -0.27 -13.14 16 13 C 0.49 9.08 7.15 -10.98 -0.08 9.00 16 14 O -0.52 -12.36 15.55 5.56 0.09 -12.28 16 15 C 0.11 1.46 2.25 -69.08 -0.16 1.31 16 16 H 0.14 1.34 3.74 -51.93 -0.19 1.15 16 17 C -0.16 -1.69 9.30 37.16 0.35 -1.34 16 18 N -0.28 -4.39 2.76 -52.92 -0.15 -4.54 16 19 N -0.06 -1.17 12.42 60.35 0.75 -0.42 16 20 N -0.09 -1.69 13.43 60.35 0.81 -0.88 16 21 N -0.30 -5.15 11.71 32.70 0.38 -4.76 16 22 C 0.19 2.68 6.40 -155.44 -1.00 1.68 16 23 C 0.01 0.14 0.75 -155.66 -0.12 0.03 16 24 C -0.15 -1.45 8.31 37.16 0.31 -1.14 16 25 C -0.13 -1.10 8.00 37.15 0.30 -0.81 16 26 C -0.15 -1.04 8.31 37.16 0.31 -0.73 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.39 5.78 7.96 -40.82 -0.32 5.46 16 32 H 0.10 0.81 7.56 -51.93 -0.39 0.41 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.60 5.57 -51.93 -0.29 0.31 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.38 5.59 -51.92 -0.29 0.09 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -33.13 349.00 -4.23 -37.36 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.39 Total: 3.03 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.31 Total: -0.96 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 2.15 Total: -47.16 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.13 -4.23 -37.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273349510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.514 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds